Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4327336   probable RNA-dependent RNA polymerase 4 
 osa-r.5   4327336   probable RNA-dependent RNA polymerase 4 
 osa-m.8   4327336   probable RNA-dependent RNA polymerase 4 
 osa-u.4   4327335   probable RNA-dependent RNA polymerase 3 
 ath-u.4   AT2G19910   RNA-dependent RNA polymerase family protein 
 ath-u.4   AT2G19920   RNA-dependent RNA polymerase family protein 
 ath-u.4   AT2G19930   RNA-dependent RNA polymerase family protein 
 gma-u.4   RDR3   RNA-dependent RNA polymerase 
 sly-u.4   Ty-1/Ty-3   RNA-dependent RNA polymerase 
 sly-u.4   101257834   probable RNA-dependent RNA polymerase 5 
 ppo-u.4   18100462   probable RNA-dependent RNA polymerase 5 
 ppo-u.4   18100983   probable RNA-dependent RNA polymerase 5 
 mtr-u.4   25496960   probable RNA-dependent RNA polymerase 5 

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Top 50 coexpressed genes to 4327336 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3020   RNA polymerase  2 52 2.27
 osa3030   DNA replication  1 41 -
 osa3013   Nucleocytoplasmic transport  2 109 -
 osa3018   RNA degradation  1 112 -
 osa500   Starch and sucrose metabolism  1 173 -

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osa:LOC4327336 (probable RNA-dependent RNA polymerase 4) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4327336
osa-r.5
for
4327336
osa-m.8
for
4327336
osa-u.4
for
4327335
ath-u.4
for
AT2G19910
ath-u.4
for
AT2G19920
ath-u.4
for
AT2G19930
gma-u.4
for
RDR3
sly-u.4
for
Ty-1/Ty-3
sly-u.4
for
101257834
ppo-u.4
for
18100462
ppo-u.4
for
18100983
mtr-u.4
for
25496960
1 LOC4331702 protein NETWORKED 1A 4331702 Os03g0161100 3.4 2.7
 4.0
 1.1
-0.8








2 LOC4326225 transcriptional corepressor LEUNIG 4326225 Os01g0177100 3.2 1.8
 4.7
 1.3
0.9
 0.7
 0.5
 1.2
 1.0
0.7
 0.6
 0.8
 -0.1
-0.4
 1.6
-0.1
 0.5
0.3
3 LOC4343013 poly [ADP-ribose] polymerase 1-like 4343013 OSNPB_070413700 3.1 3.4
 2.8
 1.3
 2.0
 1.3
 0.9
 1.0
0.7
 -0.3
 1.4
 1.6
 3.0
 0.3
4 LOC4352889 ankyrin-2 4352889 Os12g0636100 3.1 2.7
 3.5
 1.5
0.5








5 LOC4340032 LRR receptor-like serine/threonine-protein kinase GSO1 4340032 Os06g0134700 3.0 2.1
 4.0
 -0.3
 1.0
0.2
 0.9
0.8
 0.9
0.2
 0.7
0.5
 -0.0
-0.4
 2.8
0.5
 1.2
0.4
 0.5
0.3
 0.5
0.1
6 LOC9266781 replication protein A 32 kDa subunit C-like 9266781 OSNPB_060693300 3.0 3.3
 2.8
 1.0








7 LOC107278777 uncharacterized protein At5g08430 107278777 Os05g0421000 3.0 4.0
0.0
 1.0
0.9
 1.5
1.2
 1.8
1.1
 2.6
1.4
 1.6
0.4
 4.2
2.3
 1.0
-0.6
 2.2
1.5
 -0.2
-1.5
8 LOC4325802 uncharacterized LOC4325802 4325802 Os01g0133100 3.0 2.1
 3.8
 0.6








9 LOC4350788 protein ROOT HAIR DEFECTIVE 3 homolog 2-like 4350788 OSNPB_110582300 2.9 3.8
 2.1
 2.3








10 LOC4342138 protein argonaute 1D-like 4342138 OSNPB_060729300 2.9 3.0
 2.7
 2.3
2.1
 3.2
1.8
 2.2
0.8
 1.9
1.7
 2.5
2.2
 1.3
1.2
 1.9
1.8
 1.6
1.5
 1.4
1.2
 2.3
0.5
11 LOC9271302 uncharacterized LOC9271302 9271302 2.9 2.3
 3.4
 1.2
1.1








12 LOC4326971 uncharacterized LOC4326971 4326971 Os01g0327500 2.9 2.3
 3.4
 0.3








13 LOC4351288 double-stranded RNA-binding protein 8-like 4351288 OSNPB_120109900 2.9 3.2
 2.5
 0.4
0.3
 -0.1
 0.1
 -1.2
 0.9
-0.4
 -0.3
 -1.9
 -0.6
-0.7
 0.3
-1.1
 0.6
14 LOC4336704 replication factor C subunit 4-like 4336704 OSNPB_040569000 2.8 2.1
 3.6
 0.6
 1.2
 0.8
 0.5
 0.3
0.2
 0.3
 -0.7
 -0.2
 0.0
 -0.5
15 LOC4330127 protein SHORTAGE IN CHIASMATA 1 4330127 OSNPB_020642600 2.8 2.3
 3.3
 0.5


0.3
 0.4
 1.2


16 LOC4347873 nuclear pore complex protein GP210 4347873 Os09g0565500 2.8 3.0
 2.6
 0.6
 0.7
 0.4
 0.9
 1.0
 0.3
 0.4
 0.0
 1.3
 1.2
17 LOC4341961 subtilisin-like protease SBT2.6 4341961 Os06g0700000 2.8 1.6
 4.0
 0.4
 1.0
0.5
 0.6
0.1
 1.1
0.0
 0.1
-0.2
 0.5
 2.7
 0.0
-0.4
 1.6
1.3
 0.4
-0.2
18 LOC4327203 glucan endo-1,3-beta-glucosidase 13 4327203 Os01g0739700 2.7 3.1
 2.4
 0.5
 0.6
 0.4
 0.7
 0.6
-0.1
 0.5
 3.1
 1.1
 2.3
 0.1
-0.3
19 LOC4328748 tetraspanin-2 4328748 Os02g0219800 2.7 2.9
 2.5
 -0.2
-0.9
 -0.8
 -1.3
 -0.3
 -0.5
 0.6
0.4
 2.5
0.4
 -0.2
 -0.8
 0.8
20 LOC4346058 nitrate regulatory gene2 protein 4346058 Os08g0519750 2.7 3.2
 2.2
 0.3
 1.9
1.3
 2.0
1.6
 1.5
0.9
 1.5
0.8
 0.5
 1.4
 1.1
 0.9
 0.2
0.2
21 LOC4325209 factor of DNA methylation 1 4325209 Os01g0147700 2.7 2.0
 3.4
 0.8








22 LOC4352883 ankyrin repeat, PH and SEC7 domain containing protein secG 4352883 Os12g0634900 2.7 2.6
 2.7
 1.5
0.5








23 LOC4328584 methyl-CpG-binding domain-containing protein 9 4328584 Os02g0192400 2.7 3.3
 2.0
 1.8
 0.7
 0.5
 0.6
 0.5
0.3
 1.3
 1.6
 -0.9
 0.4
 0.3
24 LOC4327335 probable RNA-dependent RNA polymerase 3 4327335 Os01g0197900 2.6 1.9
 3.4
 2.6
 7.8
2.8
 7.8
2.1
 2.8
2.1
1.1
 1.1
 0.4
 0.4
25 LOC4349836 transcription factor LHW 4349836 Os11g0158500 2.6 2.6
 2.6
 1.6
1.5
 0.2
 0.4
 1.1
 1.4
1.0
 1.4
-0.0
 2.2
1.8
 0.9
0.5
 1.5
1.0
 -0.4
-0.5
26 LOC4337107 transcription factor bHLH112 4337107 Os04g0631600 2.6 3.7
 1.5
 0.2
0.1








27 LOC4325429 nuclear pore complex protein NUP98A 4325429 Os01g0383900 2.6 2.7
 2.5
 2.8








28 LOC4324438 protein argonaute 4A-like 4324438 OSNPB_010275600 2.6 2.4
 2.8
 1.5
1.3
 2.9
1.6
 2.7
1.3
 2.8
1.6
 1.7
1.5
 1.2
0.9
 1.8
1.0
 2.0
0.8
 2.6
2.3
 1.8
1.2
29 LOC4327502 ATP-dependent zinc metalloprotease FTSH 3, mitochondrial-like 4327502 OSNPB_010842600 2.5 2.5
 2.6
 0.4
0.3
 0.6
0.2
 0.6
-0.4
 0.9
0.1
 -0.3
-0.7
 1.4
0.1
 -0.2
-1.7
 -0.4
-1.3
 2.7
-0.2
 -0.2
-0.6
30 LOC4333973 homeobox protein knotted-1-like 6 4333973 OSNPB_030727000 2.5 2.5
 2.5
 1.2
0.7
 2.8
 1.9
 2.1
 1.4
0.6
 0.1
 2.2
 0.1
 2.1
 0.7
31 LOC4336722 DNA-directed RNA polymerase IV subunit 1 4336722 Os04g0572600 2.5 2.3
 2.7
 1.0
1.0
 1.8
 1.6
 1.6
 2.2
1.1
 1.1
 0.2
 -0.0
 1.3
 0.7
32 LOC4337981 uncharacterized LOC4337981 4337981 Os05g0180500 2.5 2.0
 3.0
 0.3
-0.4








33 LOC4326608 uncharacterized LOC4326608 4326608 Os01g0617700 2.5 2.4
 2.5
 1.3
 0.4
 1.7
 1.4
 0.7
0.2
 1.5
 0.4
 0.2
-0.1
 0.6
0.0
 0.8
0.4
34 LOC4335924 DDT domain-containing protein DDB_G0282237 4335924 Os04g0439400 2.5 3.2
 1.8
 1.4
0.6
 0.5
 0.4
 -0.6
 1.0
0.0
 -0.4
 -0.7
 0.5
-0.3
 0.9
0.2
 0.6
35 LOC4344306 probable ATP-dependent DNA helicase RecQ 4344306 Os07g0681600 2.5 2.7
 2.2
 -0.2


2.6
2.4
 1.5
 2.5
 -0.3
 1.5
 1.8
36 LOC4352548 protein MODIFIER OF SNC1 1 4352548 Os12g0566200 2.4 3.6
 1.3
 0.1
 -0.0
 -0.5
 0.1
 0.9
0.1
 1.2
 0.2
 -0.4
-0.4
 2.1
1.2
 1.0
0.2
37 LOC4341121 reticulon-like protein B2 4341121 Os06g0503400 2.4 2.3
 2.6
 0.4
0.2








38 LOC4331253 protein argonaute 1C-like 4331253 OSNPB_020831600 2.4 2.1
 2.8
 2.3
2.1
 3.2
1.8
 2.2
0.8
 1.9
1.7
 2.5
2.2
 1.3
1.2
 1.9
1.8
 1.6
1.5
 1.4
1.2
 2.3
0.5
39 LOC4337994 FACT complex subunit SSRP1-B-like 4337994 OSNPB_050182600 2.4 1.6
 3.2
 1.3
0.5
 0.4
 0.7
 0.3
 -0.0
-1.7
 0.2
 0.2
 -0.0
-0.6
 0.4
0.0
 1.1
0.6
40 LOC4326595 protein INVOLVED IN DE NOVO 2 4326595 Os01g0633200 2.4 2.9
 1.9
 1.0
0.7
 2.6
1.6
 2.1
1.2
 1.7
1.5
 2.4
2.1
 0.5
0.2
 1.3
1.2
 0.6
0.5
 3.8
3.3
 1.1
0.9
41 LOC4336254 DNA-directed RNA polymerase III subunit 1 4336254 Os04g0492300 2.4 3.4
 1.3
 1.6
 1.7
 1.2
 1.9
 1.2
 0.4
 -0.6
 -0.0
 1.4
 0.3
0.1
42 LOC4351571 uncharacterized LOC4351571 4351571 Os12g0161800 2.4 2.6
 2.2
 2.3
 0.0
 0.1
 0.7
 1.6
0.9
 2.1
1.1
 0.3
-0.0
 -0.1
-0.9
 2.5
-0.5
 1.7
0.2
43 LOC4330856 lysM domain-containing GPI-anchored protein LYP6-like 4330856 Os02g0769200 2.4 1.2
 3.6
 0.9
0.1
 1.7
0.6
 0.7
0.4
 1.3
0.7
 -0.8
-0.9
 -0.7
 0.4
 1.1
0.5
 1.0
0.8
 -0.2
44 LOC4333544 homeobox-leucine zipper protein HOX32-like 4333544 OSNPB_030640800 2.4 1.7
 3.0
 1.2
0.7
 0.9
0.4
 1.5
0.7
 2.7
1.8
 1.3
0.8
 1.0
0.9
 2.1
1.1
 0.6
0.5
 3.1
1.7
 0.9
-0.0
45 LOC4346068 isoamylase 1, chloroplastic-like 4346068 OSNPB_080520900 2.4 2.8
 2.0
 0.8
 0.3
 0.3
 0.5
 -0.7
 0.1
 2.1
 0.5
-0.4
 0.9
0.2
 1.0
46 LOC4325354 DDT domain-containing protein DDR4 4325354 Os01g0180700 2.4 2.0
 2.7
 1.9
 1.2
 1.3
 1.1
 0.0
-0.3
 -0.1
 -0.2
 0.5
0.2
 0.5
0.4
 1.6
47 LOC4325020 structural maintenance of chromosomes protein 2-1 4325020 Os01g0904400 2.4 2.2
 2.5
 1.0
 1.5
1.3
 1.8
1.6
 2.7
2.3
 0.7
0.6
 0.0
 1.2
 0.7
0.4
 0.4
-0.3
 1.1
48 LOC4327732 protein ANTI-SILENCING 1 4327732 Os01g0610300 2.4 2.0
 2.7
 0.0
 1.0
 1.4
 1.9
 0.4
-0.6
 2.5
0.5
 1.7
1.0
 0.6
-0.4
 1.7
1.2
 0.9
-0.0
49 LOC9270948 ultraviolet-B receptor UVR8 9270948 Os04g0226400 2.4 2.3
 2.4









50 LOC4348961 myosin-1 4348961 Os10g0488800 2.3 2.6
 2.1
 1.0
 0.7
-0.4
 1.2
-0.5
 1.2
0.5
 0.8
0.8
 -0.1
 0.8
 0.3
-0.1
 2.1
0.9
 1.2
-0.2
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