Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4327084   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 osa-r.5   4327084   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 osa-m.8   4327084   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ath-u.4   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100789088   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 gma-u.4   100810760   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 mtr-u.4   11412407   pentatricopeptide repeat-containing protein DOT4, chloroplastic 

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Top 50 coexpressed genes to 4327084 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa860   Porphyrin metabolism  5 42 7.57
 osa970   Aminoacyl-tRNA biosynthesis  5 70 6.43
 osa1240   Biosynthesis of cofactors  5 233 3.89
 osa3060   Protein export  2 49 2.32
 osa3010   Ribosome  2 353 -

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osa:LOC4327084 (pentatricopeptide repeat-containing protein DOT4, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4327084
osa-r.5
for
4327084
osa-m.8
for
4327084
ath-u.4
for
DOT4
gma-u.4
for
100789088
gma-u.4
for
100810760
mtr-u.4
for
11412407
1 LOC4336112 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4336112 Os04g0469400 7.2 7.0
 7.4
 2.5
 3.1
 1.0
 1.3
2 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 6.3 5.6
 7.1
 3.0
 2.0
-0.0
 1.2
0.9
 1.6
3 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 5.9 5.2
 6.5
 3.9
 1.7
1.1
 0.4
-0.2
 0.9
4 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 5.8 7.8
 3.8
 1.9
 2.1
1.8
 0.2
-0.2
 2.0
5 LOC4326401 probable dual-specificity RNA methyltransferase RlmN 4326401 Os01g0973400 5.4 4.8
 5.9
 3.1
 4.1
3.9
 0.8
0.2
 2.6
6 LOC4349304 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic-like 4349304 Os10g0548900 5.4 5.3
 5.4
 3.6
 2.6
1.2
 0.7
0.5
 3.8
7 LOC4346941 DEAD-box ATP-dependent RNA helicase 22-like 4346941 OSNPB_090383400 5.2 5.8
 4.6
 5.5
 6.2
 0.1
 2.0
8 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 5.0 5.6
 4.5
 2.0
1.4
 2.6
2.2
 -0.4
-0.7
 1.3
9 LOC4324772 5'-3' exonuclease 4324772 Os01g0874800 4.9 3.6
 6.2
 6.8
 4.0
 1.1
 3.5
10 LOC4350686 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like 4350686 OSNPB_110544800 4.9 6.3
 3.5
 3.0
 2.0
1.4
 1.4
1.0
 2.2
11 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 4.8 3.9
 5.7
 2.2
 1.4
 -0.4
 2.2
12 LOC4352441 uncharacterized LOC4352441 4352441 Os12g0541500 4.7 6.5
 3.0
 3.1
 2.3
2.1
 1.1
0.1
 3.0
13 LOC4332626 pentatricopeptide repeat-containing protein At3g06430, chloroplastic 4332626 Os03g0309800 4.7 5.3
 4.0
 3.1
 1.3
1.3
 -0.6
-0.7
 2.5
1.9
14 LOC4351647 monothiol glutaredoxin-S12, chloroplastic-like 4351647 OSNPB_120175500 4.7 5.2
 4.2
 1.8
 -0.0
-0.4
 -0.2
-0.9
 1.0
15 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 4.7 4.5
 4.8
 0.3
 1.4
1.2
 0.6
0.6
 0.2
16 LOC4338098 pentatricopeptide repeat-containing protein At3g49170, chloroplastic 4338098 Os05g0212100 4.6 5.2
 4.1
 10.6
 3.1
 1.1
 4.2
17 LOC4340109 single-stranded DNA-binding protein WHY1, chloroplastic 4340109 Os06g0145800 4.6 4.9
 4.4
 4.1
2.3
 2.3
1.5
 0.9
-0.6
 1.0
1.0
18 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 4.6 4.4
 4.7
 4.1
 1.6
 1.6
 1.0
19 LOC4332771 uroporphyrinogen decarboxylase 2, chloroplastic-like 4332771 OSNPB_030337600 4.6 5.7
 3.5
 1.5
 0.7
0.4
 0.0
-0.4
 0.4
20 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 4.6 6.4
 2.7
 5.8
2.4
 2.5
1.9
 1.7
1.5
 1.5
1.5
21 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 4.5 3.4
 5.6
 0.4
 1.2
 0.2
 1.6
22 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 4.5 4.1
 5.0



23 LOC4331225 uncharacterized LOC4331225 4331225 Os02g0827600 4.5 2.6
 6.4
 5.8
 2.0
1.8
 2.0
0.2
 1.0
24 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 4.5 5.1
 3.8
 1.4
 0.7
0.7
 1.1
-0.1
 1.5
25 LOC4331058 chaperone protein DnaJ 4331058 Os02g0804500 4.5 6.0
 2.9
 -0.1
 0.6
 -0.6
 1.9
26 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 4.4 4.6
 4.3
 4.6
 0.8
0.4
 1.5
1.5
 2.0
27 LOC4324805 fructokinase-like 1, chloroplastic 4324805 Os01g0851000 4.4 4.5
 4.3
 5.8
 5.1
4.1
 0.1
-0.7
 2.5
28 LOC4324152 GTP-binding protein At2g22870 4324152 Os01g0732200 4.4 3.4
 5.3
 1.7
 2.2
1.5
 0.8
0.8
 1.0
29 LOC4346468 protein CLMP1 4346468 Os09g0135400 4.4 5.3
 3.4
 3.2
 4.6
4.3
 1.0
0.1
 2.8
30 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 4.4 4.0
 4.7
 1.7
 0.9
0.7
 0.2
-0.3
 2.2
31 WP1 white panicle1 4342467 Os07g0163500 4.3 4.3
 4.4
 1.8
 1.1
 1.3
 1.6
32 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 4.3 3.6
 5.1
 2.5
 1.0
0.7
 -0.6
-0.7
 1.2
33 LOC4345098 glutamyl-tRNA reductase-binding protein, chloroplastic 4345098 Os08g0254900 4.3 5.1
 3.5
 2.2
 0.2
 0.5
 0.5
34 LOC4330767 histidine--tRNA ligase, chloroplastic/mitochondrial 4330767 Os02g0754700 4.3 4.0
 4.7
 1.6
-1.6
 0.4
 0.7
 0.5
35 LOC4349608 elongation factor P 4349608 Os11g0116400 4.3 4.1
 4.5
 1.1
 1.7
1.6
 1.0
1.0
 0.8
36 LOC4334755 putative pentatricopeptide repeat-containing protein At3g01580 4334755 Os03g0844000 4.3 4.3
 4.3



37 LOC4330964 uncharacterized LOC4330964 4330964 Os02g0788500 4.3 4.4
 4.2
 2.9
 1.7
0.7
 2.2
1.1
 0.8
38 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 4.3 5.1
 3.4
 2.1
1.9
 3.6
2.6
 0.4
-0.0
 2.6
1.9
39 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 4.3 5.1
 3.4
 0.2
 1.2
-0.1
 0.5
-0.3
 0.9
40 LOC4324476 tyrosine--tRNA ligase, chloroplastic/mitochondrial 4324476 Os01g0500900 4.2 3.8
 4.7
 4.3
 2.5
1.1
 0.1
-0.5
 2.6
2.3
41 LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial 4328118 Os02g0121000 4.2 3.6
 4.8
 2.0
 1.9
1.7
 -0.3
-0.9
 1.1
42 LOC4335962 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic 4335962 Os04g0445700 4.2 3.9
 4.6
 -0.3
 2.4
1.9
 0.8
0.2
 1.0
0.7
43 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 4.2 5.3
 3.1
 0.8
 0.5
 -0.5
 2.5
44 LOC4330740 pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like 4330740 OSNPB_020750400 4.2 4.7
 3.7
 4.9
 1.4
-1.1
 0.6
-0.6
 3.7
45 LOC4331268 uncharacterized LOC4331268 4331268 Os02g0833400 4.2 4.4
 3.9
 2.1
 1.2
0.5
 0.1
0.1
 0.4
46 LOC4346858 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4346858 Os09g0363100 4.1 4.2
 4.1
 3.0
 3.8
 3.1
 2.2
47 LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like 4334537 OSNPB_030811100 4.1 4.9
 3.4
 -0.3
 0.2
0.1
 1.6
0.4
 1.7
48 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 4.1 3.9
 4.4
 1.7
1.4
 2.6
2.5
 0.1
0.0
 2.8
49 LOC4328965 chloroplast processing peptidase 4328965 Os02g0267000 4.1 4.1
 4.1
 2.3
 0.8
0.1
 0.0
-0.5
 0.7
50 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 4.1 5.2
 3.0
 1.7
 0.7
 1.7
 1.6
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