Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4325168   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 osa-r.5   4325168   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 osa-m.8   4325168   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ath-u.4   CLPR4   CLP protease R subunit 4 
 gma-u.4   100785827   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 gma-u.4   100780029   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 sly-u.4   101247052   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ppo-u.4   18096891   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 mtr-u.4   25493594   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 

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Top 50 coexpressed genes to 4325168 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  4 336 2.27
 osa860   Porphyrin metabolism  2 42 2.45
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa195   Photosynthesis  1 77 -
 osa4146   Peroxisome  2 92 -

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osa:LOC4325168 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4325168
osa-r.5
for
4325168
osa-m.8
for
4325168
ath-u.4
for
CLPR4
gma-u.4
for
100785827
gma-u.4
for
100780029
sly-u.4
for
101247052
ppo-u.4
for
18096891
mtr-u.4
for
25493594
1 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 7.4 6.7
 8.2
 3.5
 6.2
5.7
 5.2
4.6
 4.9
 1.7
 1.4
2 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 6.7 7.1
 6.3
 3.8
 7.3
4.6
 5.9
3.2
 4.7
 3.2
2.3
 5.4
3 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 6.7 5.5
 7.9
 8.8
 4.9
 6.8
 7.1
 4.6
 6.0
4 LOC4350785 sec-independent protein translocase protein TATB, chloroplastic-like 4350785 OSNPB_110580800 6.6 5.0
 8.3
 4.3
 3.9
2.4
 3.6
0.9
 4.7
 3.3
3.1
 3.3
5 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 6.6 6.5
 6.8
 2.8
 4.8
2.5
 2.8
1.6
 0.8
 1.6
 0.9
-0.6
6 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 6.4 5.8
 7.1
 3.3
2.9
 7.1
5.7
 5.1
5.1
 4.6
 3.2
2.4
 4.8
3.0
7 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 6.4 6.6
 6.1
 4.8
 4.5
 6.1
 4.5
 5.3
 1.3
8 LOC4331719 glutathione reductase, chloroplastic 4331719 Os03g0163300 6.3 7.2
 5.3
 3.1
 3.5
3.4
 5.7
4.7
 3.2
 4.0
 3.2
9 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 6.2 4.8
 7.7
 3.3
 4.3
 2.0
 5.1
 3.3
 1.5
10 LOC4350988 GTPase Der 4350988 Os11g0638000 6.2 5.8
 6.6
 3.0
 5.5
 7.4
 3.7
 0.8
 2.1
11 LOC4338667 50S ribosomal protein L1, chloroplastic 4338667 Os05g0388500 6.1 5.7
 6.5
 6.8
 4.4
2.6
 5.3
3.9
 5.2
 5.5
1.9
 2.9
12 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 6.0 6.5
 5.6
 11.0
 7.6
6.9
 8.3
7.5
 8.3
 3.5
2.6
 5.5
4.5
13 LOC4328006 putative nitric oxide synthase 4328006 OSNPB_020104700 5.8 4.9
 6.7
 1.1
 4.3
3.9
 2.8
2.6
 5.8
 2.4
 2.8
14 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 5.8 4.5
 7.1
 4.3
 5.4
4.9
 5.8
4.6
 3.6
 4.3
2.4
 4.3
15 LOC4331942 30S ribosomal protein S10, chloroplastic 4331942 Os03g0196800 5.8 6.6
 4.9





16 LOC4338877 DAR GTPase 3, chloroplastic 4338877 Os05g0430400 5.8 6.2
 5.3
 1.1
 5.1
0.7
 4.2
1.2
 4.0
 3.3
 2.3
17 LOC4332243 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 4332243 Os03g0247000 5.7 3.3
 8.1
 8.8
3.9
 7.2
6.4
 9.2
7.7
 6.3
4.9
 5.9
4.5
 6.1
5.1
18 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 5.7 4.7
 6.6
 -0.1
 5.3
 4.9
 3.5
 3.8
 2.0
19 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 5.7 7.0
 4.4
 1.9
 6.1
3.4
 6.3
4.0
 6.0
 3.0
-1.0
 2.6
20 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 5.5 6.1
 5.0
 2.2
 6.6
6.2
 6.8
5.6
 3.0
 3.2
2.2
 2.9
21 LOC4339922 superoxide dismutase [Fe] 1, chloroplastic-like 4339922 OSNPB_060115400 5.5 4.9
 6.1
 3.4
1.5
 7.4
4.4
 4.9
3.5
 1.6
1.4
 1.2
0.9
 0.8
22 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 5.4 5.7
 5.2
 3.3
 6.2
4.7
 5.6
5.1
3.5
 1.3
23 LOC4351971 uncharacterized LOC4351971 4351971 Os12g0276100 5.4 6.9
 3.9
 1.5
 2.6
2.2
 2.2
1.2
 3.1
 2.5
 0.9
24 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 5.3 5.3
 5.3
 1.5
 5.5
5.1
 7.4
5.6
 3.8
 4.8
 4.0
25 LOC4340091 superoxide dismutase [Fe] 2, chloroplastic-like 4340091 OSNPB_060143000 5.3 6.1
 4.5
 1.2
 3.9
 1.7
 3.7
 3.9
 1.4
26 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 5.3 3.9
 6.6
 3.2
 4.9
4.3
 3.3
3.2
 5.2
 2.8
 3.0
27 LOC4339792 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic 4339792 Os05g0592100 5.3 4.3
 6.2
 8.1
 3.2
1.4
 5.4
2.4
 5.1
 3.7
 7.2
28 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 5.3 3.8
 6.7
 1.1
 5.2
 4.9
 4.4
 2.3
 1.6
29 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 5.2 4.5
 5.9
 7.0
 3.8
2.1
 5.7
5.6
 6.9
 5.2
 4.9
30 LOC4350906 serine--tRNA ligase, chloroplastic/mitochondrial 4350906 Os11g0610900 5.2 4.6
 5.9
 3.1
 4.4
 3.8
 4.0
 4.4
 3.1
31 LOC4344710 nucleolar GTP-binding protein 1 4344710 Os08g0158900 5.2 6.3
 4.1
 1.5
 2.8
 2.8
 4.3
 2.8
 0.4
32 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 5.2 6.2
 4.2
 8.7
 6.5
3.7
 7.9
4.1
 10.4
 5.3
-0.2
 5.3
33 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 5.2 4.9
 5.5
 4.2
 6.1
4.7
 4.7
3.9
 5.1
 3.3
 1.9
34 LOC4326401 probable dual-specificity RNA methyltransferase RlmN 4326401 Os01g0973400 5.1 4.8
 5.4
 2.7
 3.6
3.4
 2.7
2.5
 4.2
 3.8
 2.4
35 LOC4340929 uncharacterized LOC4340929 4340929 Os06g0332800 5.1 5.4
 4.8
 1.2
 3.4
3.3
 3.9
2.2
 3.9
 1.4
0.5
 1.5
36 LOC4345435 thioredoxin-like protein CITRX, chloroplastic 4345435 OSNPB_080378900 5.1 5.2
 5.0
 2.2
 6.0
5.1
 6.1
6.0
 3.5
 1.7
 0.9
0.5
37 LOC4331339 DEAD-box ATP-dependent RNA helicase 50-like 4331339 OSNPB_030108600 5.0 3.2
 6.8
 1.2
 6.0
3.6
 5.4
3.7
 5.2
 3.3
 3.0
38 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 5.0 4.3
 5.7
 1.1
 9.7
5.0
 6.5
4.8
 3.4
 3.9
 1.8
39 LOC4332466 50S ribosomal protein L10, chloroplastic 4332466 Os03g0284400 5.0 4.3
 5.7
 2.4
 3.1
 4.5
 3.7
 2.1
1.8
 3.7
40 LOC4331249 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 4331249 Os02g0831200 5.0 4.5
 5.4
 5.1
 4.2
 2.4
 4.1
 1.7
 2.0
41 LOC4330995 translation initiation factor IF3-4, chloroplastic 4330995 Os02g0794400 4.8 6.0
 3.6
 2.1
1.6
 3.5
3.2
 4.8
3.7
 4.0
 3.5
 3.4
42 LOC4352408 phenylalanine--tRNA ligase, chloroplastic/mitochondrial 4352408 Os12g0533700 4.8 4.9
 4.8
 5.3
 6.2
3.6
 4.0
3.6
 8.3
 3.6
 3.3
43 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 4.8 4.6
 5.0
 4.1
 5.2
2.8
 4.5
2.1
 2.7
 1.7
 0.7
44 LOC9266673 proteinaceous RNase P 1, chloroplastic/mitochondrial-like 9266673 4.8 4.8
 4.8
 3.2
 4.7
2.5
 3.6
1.4
 2.7
 1.9
1.8
 2.9
45 LOC4337512 uncharacterized LOC4337512 4337512 Os04g0692200 4.8 5.5
 4.1
 4.5
 4.7
3.7
 5.8
2.7
 4.2
 2.8
 1.8
1.0
46 LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like 4334537 OSNPB_030811100 4.7 5.1
 4.4
 3.8
 5.8
4.9
 5.6
5.4
 2.7
 4.4
 3.0
47 ASL2 Albino Seedling Lethal2 4328932 Os02g0259600 4.7 6.4
 3.1
 3.2
 8.0
5.2
 7.9
5.3
 3.2
 3.2
0.8
 3.4
48 LOC9270395 probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 9270395 Os12g0485000 4.7 4.8
 4.5
 1.6
 1.8
 2.2
 2.3
 3.0
 1.8
49 LOC4350828 GTPase HflX 4350828 Os11g0592700 4.6 4.5
 4.8
 2.9
 2.5
 4.7
 4.3
 3.9
 2.6
50 LOC4344571 uncharacterized LOC4344571 4344571 Os08g0127600 4.6 6.5
 2.8
 2.8
 4.9
4.7
 3.8
3.0
 3.1
 3.2
0.1
 0.7
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