Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4324476   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 osa-r.5   4324476   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 osa-m.8   4324476   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.4   EMB2768   Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 
 gma-u.4   100813016   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.4   100795726   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.4   101255211   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.4   18105304   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.4   25494107   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.4   25491022   tyrosine--tRNA ligase, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 4324476 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1240   Biosynthesis of cofactors  5 233 3.89
 osa860   Porphyrin metabolism  3 42 4.02
 osa970   Aminoacyl-tRNA biosynthesis  2 69 2.03
 osa61   Fatty acid biosynthesis  1 47 -
 osa3010   Ribosome  2 353 -

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osa:LOC4324476 (tyrosine--tRNA ligase, chloroplastic/mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4324476
osa-r.5
for
4324476
osa-m.8
for
4324476
ath-u.4
for
EMB2768
gma-u.4
for
100813016
gma-u.4
for
100795726
sly-u.4
for
101255211
ppo-u.4
for
18105304
mtr-u.4
for
25494107
mtr-u.4
for
25491022
1 LOC4351875 stromal 70 kDa heat shock-related protein, chloroplastic 4351875 Os12g0244100 5.6 5.7
 5.5
 3.5
2.7
 4.5
3.8
 5.3
4.4
 6.1
-0.9
 3.0
1.7
 3.5
 4.3
2 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 5.4 6.0
 4.7
 5.7
 7.1
4.7
 6.0
5.6
 5.9
 3.3
 2.5
 2.2
3 LOC4332203 translocase of chloroplast 34, chloroplastic 4332203 Os03g0240500 5.3 5.9
 4.7
 1.9
0.7
 2.4
2.3
 2.1
2.0
 3.6
0.8
 1.8
1.4
 2.4
0.2
 2.6
0.2
4 LOC9270830 protein TIC110, chloroplastic 9270830 Os10g0492101 5.1 7.8
 2.4
 3.5
 3.5
3.2
 3.8
3.4
 5.1
 5.2
1.3
 3.5
0.8
 3.6
0.5
5 LOC4351647 monothiol glutaredoxin-S12, chloroplastic-like 4351647 OSNPB_120175500 5.0 6.2
 3.8
 2.3
 3.0
2.4
 4.5
4.0
 3.5
 2.8
 1.5
 2.4
6 LOC4326635 uroporphyrinogen decarboxylase 1, chloroplastic-like 4326635 OSNPB_010622300 4.9 4.4
 5.3
 3.0
 4.0
3.8
 4.7
3.7
 6.2
 2.9
 1.1
 2.5
7 LOC4336102 indole-3-glycerol phosphate synthase, chloroplastic 4336102 Os04g0467700 4.8 6.8
 2.8
 1.5
0.9
 3.3
2.7
 2.6
1.8
 6.0
 2.0
 -0.1
 1.3
8 LOC4351989 protein RETICULATA-RELATED 1, chloroplastic 4351989 Os12g0283800 4.6 5.1
 4.1
 1.9
 4.7
4.3
 6.0
5.1
 3.9
3.6
 3.6
2.6
 1.6
 1.1
9 LOC4335962 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic 4335962 Os04g0445700 4.6 4.0
 5.1
 2.5
 3.0
2.8
 4.0
1.6
 4.4
2.6
 1.0
0.8
 2.2
1.8
 2.7
1.7
10 LOC9269534 ribosome-binding ATPase YchF 9269534 Os03g0781000 4.4 5.7
 3.2
 5.6
 2.9
 3.4
 5.2
 3.5
 0.8
 2.1
11 LOC4332626 pentatricopeptide repeat-containing protein At3g06430, chloroplastic 4332626 Os03g0309800 4.4 5.0
 3.8
 3.6
 5.6
5.2
 5.6
4.4
 4.1
3.5
 2.5
2.3
 1.4
0.8
 2.1
1.7
12 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 4.4 5.9
 2.9
 1.2
0.9
 2.8
2.4
 2.9
2.1
 4.6
3.4
 3.3
0.5
 3.0
 4.2
13 LOC4329960 protein GrpE 4329960 Os02g0612000 4.3 4.6
 3.9
 3.7
 5.9
4.4
 5.6
4.2
 6.2
 4.1
 3.6
 3.2
14 LOC4327084 pentatricopeptide repeat-containing protein DOT4, chloroplastic 4327084 Os01g0205200 4.2 3.8
 4.7
 4.3
 2.5
0.1
 1.1
-0.5

2.3
 2.6
15 LOC4352460 nucleoside diphosphate kinase 2, chloroplastic 4352460 Os12g0548300 4.2 5.0
 3.5
 1.6
 3.6
3.4
 3.2
2.8
 4.6
3.0
 2.6
 1.9
 1.9
16 LOC4346468 protein CLMP1 4346468 Os09g0135400 4.2 4.5
 3.9
 2.9
 4.7
4.5
 4.7
4.4
 4.7
3.8
 4.1
2.8
 3.1
 3.4
17 LOC4330925 20 kDa chaperonin, chloroplastic 4330925 Os02g0781400 4.2 5.7
 2.7
 3.2
 4.4
3.9
 4.1
3.7
 5.4
5.0
 3.5
2.4
 1.9
1.5
 2.3
2.2
18 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 4.1 5.6
 2.6
 1.9
1.8
 2.7
 5.9
 3.4
0.9
 3.5
2.6
 0.9
 1.8
19 LOC4336463 uncharacterized LOC4336463 4336463 Os04g0527800 4.0 4.5
 3.6
 2.0
 4.4
2.6
 4.1
2.9
 5.1
 4.9
 2.2
 2.8
20 LOC4336211 uncharacterized LOC4336211 4336211 Os04g0485700 4.0 3.4
 4.6
 3.8
 -0.0
 2.9
 3.1
 3.0
 3.1
 2.0
21 LOC4352413 acyl carrier protein 1, chloroplastic 4352413 Os12g0534200 3.9 4.5
 3.3
 -0.5
-0.5
 2.3
1.6
 1.7
0.8
 0.3
-0.0
 2.1
0.6
 0.8
0.5
 1.1
0.2
22 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 3.9 5.2
 2.6
 1.5
 4.1
2.7
 4.4
2.8
 3.2
 2.0
 0.1
 1.8
23 LOC4324805 fructokinase-like 1, chloroplastic 4324805 Os01g0851000 3.9 4.0
 3.8
 3.9
 3.4
1.9
 4.2
2.1
 8.0
 4.1
 2.8
 4.0
24 LOC4328160 phosphatidate cytidylyltransferase 4, chloroplastic 4328160 3.9 5.3
4.3
2.4
 2.7
0.5
 3.1
1.0
 1.3
 0.7
 1.3
 1.2
25 LOC4330767 histidine--tRNA ligase, chloroplastic/mitochondrial 4330767 Os02g0754700 3.9 5.0
 2.7
 3.4
-0.2
 3.1
 2.5
 4.3
 2.2
 1.4
 1.3
26 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 3.8 5.0
 2.6
 2.2
 2.8
2.2
 3.8
3.1
 3.9
 2.5
 0.2
 1.9
27 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 3.8 3.2
 4.5
 0.7
0.6
 1.5
1.3
 1.4
1.2
 2.1
1.1
 4.0
0.3
 0.1
-0.7
 1.0
-0.2
28 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 3.8 6.2
 1.4
 2.7
2.1
 3.7
3.7
 4.0
3.9
 2.9
2.5
 1.9
1.4
 1.6
1.3
 2.9
2.3
29 LOC4327912 peptidyl-prolyl cis-trans isomerase A1 4327912 Os01g0284700 3.8 4.4
 3.2
 2.8
 2.8
2.0
 3.0
2.5
1.4
 0.6
0.3
 1.0
0.6
30 LOC4347099 probable monogalactosyldiacylglycerol synthase 1, chloroplastic 4347099 OSNPB_090423600 3.8 4.4
 3.2
 -0.2
 1.5
0.5
 1.8
1.0
 1.6
 1.9
1.0
 2.7
2.2
 2.5
1.8
31 LOC4340394 20 kDa chaperonin, chloroplastic 4340394 Os06g0197575 3.8 5.4
3.2
 4.4
3.9
 4.1
3.7
 5.4
5.0
 3.5
2.4
 1.9
1.5
 2.3
2.2
32 LOC4332290 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic 4332290 Os03g0255200 3.7 3.5
 4.0
 4.2
 2.9
 3.1
 5.6
 1.5
 3.2
 2.3
33 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 3.7 4.0
 3.4
 5.5
2.5
 5.8
4.1
 5.0
4.2
 4.7
 5.8
 2.3
 3.7
34 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 3.7 3.3
 4.1
 3.5
 2.9
2.1
 4.2
3.3
 4.3
 3.5
1.5
 2.6
 3.6
35 LOC4349608 elongation factor P 4349608 Os11g0116400 3.7 3.9
 3.5
 2.4
 3.5
2.7
 3.3
2.7
 3.1
 2.8
 1.3
 2.4
36 LOC4340109 single-stranded DNA-binding protein WHY1, chloroplastic 4340109 Os06g0145800 3.7 4.7
 2.7
 3.0
2.9
 3.2
2.6
 3.7
2.9
 4.0
 3.9
1.8
 1.7
0.9
 1.5
1.2
37 LOC4346032 transcription termination factor MTERF6, chloroplastic/mitochondrial 4346032 Os08g0515800 3.7 2.9
 4.4
 2.2
 3.7
3.7
 2.3
2.1
 2.9
 2.8
 1.2
 2.0
38 LOC4352412 uncharacterized LOC4352412 4352412 Os12g0534100 3.7 3.1
 4.2
 3.0
 2.0
 -0.0
 1.2
 1.1
 1.2
 1.3
39 LOC4324537 CRS2-associated factor 1, chloroplastic-like 4324537 OSNPB_010495900 3.6 3.6
 3.7
 4.3
 3.7
0.7
 3.9
1.2
 2.4
 2.8
2.3
 2.9
 2.2
40 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 3.6 5.2
 2.1
 3.8
0.9
 5.4
4.3
 5.5
4.7
 4.5
1.7
 2.7
2.0
 2.7
1.6
 2.9
2.1
41 LOC4338057 thioredoxin-like 2, chloroplastic 4338057 OSNPB_050200100 3.6 3.8
 3.5
 0.3
-0.6
 3.9
1.7
 3.1
2.0
 0.8
0.5
 0.5
0.2
 1.5
 1.7
42 LOC4331268 uncharacterized LOC4331268 4331268 Os02g0833400 3.6 4.6
 2.6
 3.8
 4.6
3.9
 4.7
4.2
 5.3
 2.7
2.0
 3.0
 1.7
43 LOC4331715 pentatricopeptide repeat-containing protein At3g23020 4331715 Os03g0163000 3.6 4.2
 3.0
 2.9
 2.1
1.3
 2.4
1.2
 4.3
 2.5
 2.1
1.6
 2.1
1.1
44 LOC4335424 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 4335424 Os04g0303900 3.6 3.2
 3.9
 2.6
 2.9
2.8
 3.7
3.3
 7.2
 3.1
 0.7
 2.2
45 LOC4347821 cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 4347821 Os09g0556500 3.5 4.4
 2.7
 4.6
 4.4
1.1
 2.8
2.5
 3.8
 3.6
 2.3
 2.0
46 LOC4337834 translocase of chloroplast 159, chloroplastic 4337834 Os05g0151400 3.5 3.5
 3.5
 1.0
 6.1
3.5
 4.6
3.7
 4.3
3.0
 2.2
1.6
 4.5
 4.1
47 LOC4335897 psbP domain-containing protein 2, chloroplastic 4335897 Os04g0434900 3.5 4.5
2.5
 3.2
2.3
 3.4
1.6
 1.6
 0.9
 1.0
 1.4
48 LOC4330740 pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like 4330740 OSNPB_020750400 3.5 4.0
 2.9
 5.6
 3.8
0.7
 4.1
1.5
 3.4
 2.8
 2.8
 3.1
49 LOC4329921 uncharacterized LOC4329921 4329921 Os02g0606000 3.5 2.1
 4.8
 2.8
0.0
 4.7
3.8
 5.2
5.1
 5.5
 2.5
 1.9
-0.2
 2.2
0.4
50 LOC4342830 putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873 4342830 Os07g0247100

1.6
 1.4
 1.3
 0.9
 1.5

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