Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4325920   pentatricopeptide repeat-containing protein At3g22690 
 osa-r.5   4325920   pentatricopeptide repeat-containing protein At3g22690 
 ath-u.4   AT5G27110   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100817231   pentatricopeptide repeat-containing protein At5g27110 
 gma-u.4   100819187   pentatricopeptide repeat-containing protein At5g27110 
 sly-u.4   101257516   pentatricopeptide repeat-containing protein At5g27110 
 mtr-u.4   11436008   pentatricopeptide repeat-containing protein At5g27110 

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Top 50 coexpressed genes to 4325920 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  2 35 2.61
 osa730   Thiamine metabolism  1 22 -
 osa20   Citrate cycle (TCA cycle)  1 60 -
 osa480   Glutathione metabolism  1 114 -
 osa1200   Carbon metabolism  1 273 -

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osa:LOC4325920 (pentatricopeptide repeat-containing protein At3g22690) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4325920
osa-r.5
for
4325920
ath-u.4
for
AT5G27110
gma-u.4
for
100817231
gma-u.4
for
100819187
sly-u.4
for
101257516
mtr-u.4
for
11436008
1 LOC4325919 molybdate transporter 2 4325919 Os01g0645900 3.3 4.6
0.6
 0.0
 0.2
 0.1
2 LOC4346745 pentatricopeptide repeat-containing protein At4g02750 4346745 Os09g0327200 3.3 4.9
 10.5
 1.9
1.5
 0.3
0.2
 2.3
 2.2
0.2
3 LOC9272531 pentatricopeptide repeat-containing protein At2g35030, mitochondrial 9272531 Os11g0433101 3.3 4.9
 7.8
 2.1
 0.6
 3.0
 2.2
2.1
4 LOC4324769 uncharacterized LOC4324769 4324769 Os01g0874100 3.3 4.5
 1.3
 1.6
1.6
 0.3
-0.2
 1.8
 1.2
5 LOC9266469 uncharacterized LOC9266469 9266469 Os01g0272800 3.2 4.8
-0.6
-0.9
 -0.5
-0.5
 -0.5
 0.6
6 LOC4344477 protein Rf1, mitochondrial 4344477 Os08g0110200 3.2 4.4




7 LOC4343226 serine carboxypeptidase-like 4343226 OSNPB_070479300 3.1 4.4
 1.0
0.2
 -0.6
-0.6
 0.3
0.2
 1.1
0.4
 0.8
0.3
8 LOC4334682 uncharacterized LOC4334682 4334682 Os03g0832900 3.1 4.2
 0.0
 0.1
-0.2
 0.5
0.2
 -0.3
 0.9
9 LOC9267207 pentatricopeptide repeat-containing protein At5g15010, mitochondrial 9267207 Os01g0816000 3.0 4.3
 2.8
 0.4
 -0.5
 1.5
 1.2
10 LOC107277890 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 107277890 Os12g0157066 3.0 4.3
 5.9

3.7
11 LOC4349873 uncharacterized LOC4349873 4349873 Os11g0167300 2.9 4.1
 3.8
2.5
 3.9
2.3
 0.4
-0.4
 2.4
 1.5
12 LOC4350698 adagio-like protein 3 4350698 OSNPB_110547000 2.9 4.1
 0.4
 -0.7
-0.8
 -1.0
-1.2
 0.5
 0.2
13 LOC4342804 pentatricopeptide repeat-containing protein At4g21065 4342804 Os07g0239600 2.9 4.0
0.7
0.7
 0.6
-0.2
 3.5
14 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 2.9 4.1
 -1.5
 -0.1
 0.7
 -1.1
 0.9
15 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 2.8 3.9
 0.3
 -0.1
-0.6
 -0.7
-1.3
 0.3
 0.3
-1.2
16 LOC4349672 non-structural maintenance of chromosomes element 1 homolog 4349672 Os11g0130300 2.8 3.9
 2.3
 0.9
 0.2
 0.2
 0.4
17 LOC4331333 phosphoglucan phosphatase DSP4, amyloplastic 4331333 Os03g0107800 2.8 3.8
 -0.1
 2.2
-0.2
 1.2
0.3
 -0.2
-0.4
 -0.1
18 LOC4324176 cytosolic isocitrate dehydrogenase [NADP] 4324176 Os01g0654500 2.8 4.1
 1.8
0.7
 0.7
-0.5
 0.5
0.3
 1.1
1.0
 0.7
0.4
19 LOC4330000 two-component response regulator-like PRR1 4330000 OSNPB_020618200 2.7 3.8
 -0.3
 0.1
-0.0
 -0.2
-0.6
 0.6
0.3
 0.7
0.1
20 LOC4342470 pentatricopeptide repeat-containing protein At3g62890 4342470 Os07g0163900 2.7 3.8



1.1
21 LOC4325366 putative pentatricopeptide repeat-containing protein At5g52630 4325366 Os01g0651100 2.7 4.5
 4.5
 1.7
 0.0
 3.4
 1.0
22 LOC4339896 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 4339896 Os06g0112000 2.6 3.4
 4.5
 1.6
0.2
 0.3
-0.6
 4.5
 1.0
0.8
23 LOC9267318 protein Rf1, mitochondrial 9267318 Os05g0393900 2.6 3.7




24 LOC4331855 uncharacterized LOC4331855 4331855 Os03g0184100 2.6 3.4
 0.3
 0.2
-0.2
 -0.1
-1.0
 0.3
 -0.6
25 LOC4345334 phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like 4345334 OSNPB_080344600 2.5 3.3
 -0.4
-0.7
 0.3
0.2
 1.2
0.1
 0.1
-1.4
 0.7
-0.4
26 LOC4331630 nephrocystin-3 4331630 Os03g0149400 2.5 3.6




27 LOC9269734 lysine-specific demethylase JMJ30 9269734 Os08g0508500 2.5 3.2
 0.4
 -0.4
-0.4
 -1.0
-1.4
 0.8
 0.2
28 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 2.5 3.4
 0.9
 1.1
1.0
 0.0
0.0
 -1.1
 -1.3
29 LOC4332353 uncharacterized LOC4332353 4332353 Os03g0265900 2.5 3.7
 -0.5
 0.2
0.1
 1.3
0.7
 -0.2
-0.4
 0.4
-1.0
30 LOC9270198 putative pentatricopeptide repeat-containing protein At3g15200 9270198 Os01g0151900 2.5 3.5
 2.7

2.1
 2.7
2.0
31 LOC4335578 single-stranded DNA-binding protein, mitochondrial 4335578 Os04g0363700 2.5 3.6
 1.5
 1.9
1.1
 1.0
0.3
 2.2
 -0.2
32 LOC107278775 pentatricopeptide repeat-containing protein At4g35130, chloroplastic 107278775 Os03g0136700 2.5 3.5
 10.2



33 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 2.5 3.2
 1.0
 1.3
0.4
 0.1
-0.6
 0.6
 2.3
34 LOC4326932 bifunctional nuclease 1-like 4326932 OSNPB_010702000 2.5 3.1




35 LOC4324947 uncharacterized LOC4324947 4324947 Os01g0872100 2.5 3.2




36 LOC4327484 pentatricopeptide repeat-containing protein At1g09220, mitochondrial 4327484 Os01g0815900 2.4 3.4
1.4
 -0.6
 3.2
 2.9
37 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 2.4 3.3
 2.2
 1.0
 -0.0
 0.8
 1.1
38 LOC4347435 lysine-specific demethylase JMJ30 4347435 Os09g0489200 2.4 3.6
 0.4
 -0.4
-0.4
 -1.0
-1.4
 0.8
 0.2
39 LOC9267687 pentatricopeptide repeat-containing protein At5g43790 9267687 Os12g0128200 2.4 3.2
 3.8

3.0
 0.9
40 LOC4328201 pentatricopeptide repeat-containing protein At2g17140 4328201 Os02g0132100 2.4 3.6
 6.9
 1.1
 -0.2
 0.1
 2.1
41 LOC107276792 uncharacterized LOC107276792 107276792 Os08g0553750 2.4 3.6




42 LOC4337840 pentatricopeptide repeat-containing protein At2g13600 4337840 Os05g0153400 2.4 3.2




43 LOC4333040 pentatricopeptide repeat-containing protein At4g33990 4333040 Os03g0396200 2.4 3.1
 5.5
 3.1
 1.7
 1.4
 3.0
44 LOC4337027 ABC transporter C family member 2 4337027 Os04g0620066 2.4 3.0
 0.1
-0.5
 0.7
-0.0
 2.3
2.1
 -0.6
-1.1
 2.1
1.7
45 LOC107280234 pentatricopeptide repeat-containing protein At3g13880-like 107280234 2.4 3.3




46 LOC4342999 transcription termination factor MTEF18, mitochondrial 4342999 Os07g0409400 2.3 2.8
 0.4
 2.2
1.8
 2.0
1.9
 1.9
 3.0
1.7
47 LOC4327598 putative pentatricopeptide repeat-containing protein At5g40405 4327598 Os01g0814300 2.3 3.0


3.7
48 LOC4325154 aspartic proteinase-like 4325154 Os01g0290000 2.3 3.1
 -0.2
-0.6
 -0.8
-1.2
 0.2
-0.1
 -0.3
-0.7
 0.6
0.6
49 LOC9271701 pentatricopeptide repeat-containing protein At3g58590 9271701 Os01g0754700 2.3 3.2
 9.6
 0.1
 -0.3
 3.2
 1.2
50 LOC4345655 pentatricopeptide repeat-containing protein At3g47530 4345655 Os08g0434000 2.3 3.1
 6.5
 1.9
 0.1
 2.9
 0.4
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