Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4326542   uncharacterized tRNA/rRNA methyltransferase MRA_3618 
 osa-r.5   4326542   uncharacterized tRNA/rRNA methyltransferase MRA_3618 
 ath-u.4   AT2G19870   tRNA/rRNA methyltransferase (SpoU) family protein 
 gma-u.4   100802486   uncharacterized tRNA/rRNA methyltransferase slr0955 
 sly-u.4   101264218   rRNA methyltransferase 1, mitochondrial 
 ppo-u.4   7488946   uncharacterized LOC7488946 
 mtr-u.4   11407573   rRNA methyltransferase 1, mitochondrial 

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Top 50 coexpressed genes to 4326542 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3410   Base excision repair  1 40 -
 osa3030   DNA replication  1 41 -
 osa3018   RNA degradation  1 112 -
 osa970   Aminoacyl-tRNA biosynthesis  1 117 -
 osa500   Starch and sucrose metabolism  1 173 -

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osa:LOC4326542 (uncharacterized tRNA/rRNA methyltransferase MRA_3618) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4326542
osa-r.5
for
4326542
ath-u.4
for
AT2G19870
gma-u.4
for
100802486
sly-u.4
for
101264218
ppo-u.4
for
7488946
mtr-u.4
for
11407573
1 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 6.1 8.6
 3.7
2.0
 3.3
3.2
 3.7
2.8
 3.9
2.8
 3.8
2 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 5.5 7.3
 2.9
 4.6
4.1
 3.3
 3.7
 2.0
3 LOC4339536 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4339536 Os05g0551900 5.2 7.6
 3.2
 3.3
2.5
 3.6
 1.5
 3.3
0.8
4 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 5.0 7.0
 6.6
 3.4
3.1
 2.9
 4.8
 3.0
5 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 5.0 7.0
 5.5
 4.2
 2.7
 5.0
 3.9
6 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 5.0 6.6
 3.3
 1.5
 2.6
 2.8
 1.6
7 LOC9269203 tRNase Z TRZ2, chloroplastic 9269203 Os09g0482680 4.9 6.1
 3.9
0.1
 3.2
1.4
 1.8
1.4
 3.3
0.5
 2.1
0.5
8 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 4.8 6.3
 0.9
 4.3
3.1
 1.7
 2.8
2.5
 2.9
1.8
9 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 4.8 6.5




10 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 4.7 6.2
 2.5
 3.4
2.1
 2.6
 1.9
 1.3
11 LOC4327755 uncharacterized protein At4g37920 4327755 Os01g0306800 4.7 6.8
 4.0
 2.8
2.8
 3.4
 0.8
 2.2
12 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 4.5 5.9
 5.2
3.6
 3.7
3.1
 4.3
2.0
 3.7
2.6
 3.7
1.8
13 LOC4333402 fructokinase-like 2, chloroplastic 4333402 Os03g0602600 4.5 6.5
 8.2
 4.0
2.8
 4.1
 4.9
 3.7
14 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 4.4 5.4
 1.9
 5.2
3.1
 1.0
 1.7
 1.8
15 LOC4349098 uncharacterized LOC4349098 4349098 Os10g0512500 4.3 5.7
 2.4
 2.9
 2.1
 4.5
 3.4
16 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 4.3 5.4
 2.2
 2.5
1.7
 2.4
 2.7
 2.8
17 LOC4334623 pentatricopeptide repeat-containing protein At1g74850, chloroplastic 4334623 Os03g0824100 4.2 6.0
 6.0
 5.2
4.0
 5.8
 4.6
 4.8
18 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 4.2 5.3
 6.1
 5.3
 2.6
 4.3
 4.5
19 LOC4327567 Ribonuclease III domain-containing protein RNC1, chloroplastic 4327567 OSNPB_010810100 4.2 5.9
 4.5
 4.3
3.2
 4.8
 2.9
 2.6
20 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 4.1 5.2
 2.9
 2.8
2.8
 5.4
 2.0
 2.7
21 LOC4351293 uncharacterized LOC4351293 4351293 Os12g0110400 4.1 5.9
 3.2
 3.5
2.8
 3.8
 3.0
 1.7
22 LOC4329061 uncharacterized protein At4g37920 4329061 Os02g0291500 4.1 5.7
 3.0
 1.6
 1.6
 4.1
1.7
 2.8
23 LOC4337150 DNA polymerase I A, chloroplastic-like 4337150 Os04g0637400 4.0 5.2
 4.5
4.5
 4.8
4.0
 4.6
 2.4
1.4
 3.0
0.4
24 LOC4327311 uncharacterized RNA methyltransferase BH0687 4327311 Os01g0193600 4.0 5.4
 6.2
 3.0
 2.4
 1.9
 3.6
25 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 4.0 5.0
 3.1
 3.6
2.9
 4.3
 2.5
 2.5
26 LOC4337316 cell division protein FtsZ homolog 1, chloroplastic 4337316 Os04g0665400 4.0 5.9
 4.2
 4.1
4.1
 1.8
0.1
 4.3
 3.0
1.6
27 LOC4332899 uncharacterized LOC4332899 4332899 Os03g0363400 4.0 5.2
 2.2
 2.5
 1.2
 2.4
 -0.1
-1.1
28 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 4.0 4.9
 1.1
 4.2
3.8
 2.7
 2.7
 3.2
29 LOC107276049 protein SYM1 107276049 Os12g0127900 4.0 5.7
 2.6
 1.9
 2.9
 2.6
1.9
 1.0
30 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 3.9 5.1
 7.2
2.5
 4.2
3.9
 4.1
 3.8
2.0
 2.6
1.2
31 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 3.9 4.9
 1.6
 3.8
 3.9
 4.1
 3.6
32 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 3.8 5.2
 3.3
 3.0
 2.7
 1.6
 0.8
33 LOC4344860 pentatricopeptide repeat-containing protein At3g59040 4344860 Os08g0191900 3.8 5.4
 7.6
 4.1
3.5
 1.8
 3.1
 2.5
34 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 3.8 5.0
 0.5
 1.9
 1.2
 2.9
 3.0
35 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 3.8 4.9
 0.2
 1.0
-0.1
 1.1
1.1
 3.0
2.9
 2.8
0.4
36 LOC4330083 DEAD-box ATP-dependent RNA helicase 47A-like 4330083 OSNPB_020636300 3.8 4.8
 3.5
 6.7
4.6
 3.9
 2.7
 3.2
37 LOC4340109 single-stranded DNA-binding protein WHY1, chloroplastic 4340109 Os06g0145800 3.8 4.8
 5.5
4.1
 4.0
3.1
 3.2
 3.2
1.9
 1.4
1.3
38 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 3.8 4.8
 4.8
3.3
 3.5
3.4
 3.9
 3.2
2.4
 3.2
1.9
39 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 3.8 4.9
 4.6
 2.6
 1.8
 1.6
 0.6
40 LOC4334190 upstream activation factor subunit UAF30 4334190 Os03g0761000 3.7 5.3
 4.7
4.1
 4.7
4.3
 2.4
1.5
 3.5
3.0
 2.9
-0.7
41 LOC4331225 uncharacterized LOC4331225 4331225 Os02g0827600 3.7 5.0
 2.5
 2.3
2.2
 1.9
 3.4
 1.0
42 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 3.7 5.1
 3.7
 5.2
4.1
 3.0
 2.6
 1.7
43 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 3.7 4.9
 2.3
 2.8
 2.6
 2.5
 1.5
44 LOC4349304 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic-like 4349304 Os10g0548900 3.7 4.9
 5.9
 3.1
2.2
 3.3
 5.2
 4.2
45 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 3.6 5.0
 0.6
 2.0
2.0
 -0.0
 1.1
0.8
 1.5
46 LOC4345875 uncharacterized LOC4345875 4345875 Os08g0484800 3.6 4.8
 1.5
 1.7
1.6
 0.8
 1.1
0.1
 3.0
47 LOC4349577 uncharacterized LOC4349577 4349577 Os11g0110100 3.6 5.1
 3.2
 3.5
2.8
 3.8
 3.0
 1.7
48 LOC4347161 20 kDa chaperonin, chloroplastic 4347161 Os09g0438700 3.6 4.7
 3.1
 3.5
3.0
 2.8
2.5
 3.3
2.4
 2.7
2.5
49 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 3.6 4.3
 6.9
 4.1
 4.4
 4.0
 2.4
50 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 3.6 4.5
 2.7
2.6
 3.1
2.7
 3.8
2.6
 4.1
3.5
 4.3
3.5
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