Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4325304   pentatricopeptide repeat-containing protein At4g21190 
 osa-r.5   4325304   pentatricopeptide repeat-containing protein At4g21190 
 osa-m.8   4325304   pentatricopeptide repeat-containing protein At4g21190 
 ath-u.4   emb1417   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100781797   pentatricopeptide repeat-containing protein At4g21190 
 gma-u.4   100809627   pentatricopeptide repeat-containing protein At4g21190 
 sly-u.4   101257440   pentatricopeptide repeat-containing protein At4g21190 
 ppo-u.4   18106449   pentatricopeptide repeat-containing protein At4g21190 
 mtr-u.4   25496504   pentatricopeptide repeat-containing protein At4g21190 

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Top 50 coexpressed genes to 4325304 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4146   Peroxisome  3 86 3.10
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa195   Photosynthesis  1 77 -
 osa3018   RNA degradation  2 112 -
 osa3010   Ribosome  2 353 -

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osa:LOC4325304 (pentatricopeptide repeat-containing protein At4g21190) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4325304
osa-r.5
for
4325304
osa-m.8
for
4325304
ath-u.4
for
emb1417
gma-u.4
for
100781797
gma-u.4
for
100809627
sly-u.4
for
101257440
ppo-u.4
for
18106449
mtr-u.4
for
25496504
1 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 5.9 5.9
 5.9
 3.7
 5.0
 5.2
 3.5
 2.8
 1.0
2 LOC4336948 methionine aminopeptidase 1B, chloroplastic 4336948 Os04g0610500 5.7 5.7
 5.7
 2.6
 3.4
2.8
 2.2
2.0
 3.9
 1.4
 3.2
3 LOC4325305 DNA polymerase eta 4325305 Os01g0757800 5.6 4.0
 7.2
 2.2
 0.1
 0.6
 -0.5
 0.4
 2.1
4 LAS lethal albinic seedling 4329580 Os02g0538000 5.5 5.5
 5.5
 3.8
 2.9
 1.9
 1.3
 2.0
 2.4
5 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 5.3 7.4
 3.3
 -0.2
 2.6
 1.4
 4.1
 3.7
 2.5
6 LOC4329586 ribonuclease J 4329586 Os02g0539600 5.3 5.1
 5.6
 5.0
 7.2
5.5
 8.4
5.7
 6.0
 2.7
1.9
 2.3
-1.0
7 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 5.3 5.9
 4.6
 6.3
 1.5
 1.6
 4.6
 2.4
2.3
 1.5
8 LOC4338877 DAR GTPase 3, chloroplastic 4338877 Os05g0430400 5.2 3.6
 6.9
 3.8
 4.5
1.1
 2.6
0.9
 6.1
 4.0
 4.8
9 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 5.2 5.7
 4.7
 2.2
 3.0
2.3
 2.4
1.7
1.1
 2.2
10 LOC4340091 superoxide dismutase [Fe] 2, chloroplastic-like 4340091 OSNPB_060143000 4.9 4.7
 5.2
 5.2
 2.3
 1.0
 3.1
 2.3
 2.7
11 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 4.9 5.2
 4.7
 4.1
 1.9
1.8
 1.5
0.8
 3.1
 3.1
1.2
 2.8
12 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 4.9 4.3
 5.5
 6.7
 3.9
1.8
 3.1
1.2
 4.2
 2.3
 3.0
13 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 4.8 4.4
 5.3
 5.6
 3.6
3.5
 2.8
1.8
 5.9
 2.4
 2.9
14 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 4.8 5.6
 4.0
 0.0
 3.4
2.6
 1.3
1.2
 4.1
 3.3
2.7
 0.9
15 LOC4334836 pentatricopeptide repeat-containing protein At5g46580, chloroplastic 4334836 Os03g0856100 4.8 3.5
 6.1
 4.8
 6.2
5.1
 6.3
3.9
 2.6
 2.2
 3.5
16 LOC4327541 50S ribosomal protein L34, chloroplastic 4327541 Os01g0805000 4.7 4.0
 5.3
 -0.2
 2.6
1.3
 1.3
1.3
 1.3
 1.2
 2.1
17 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 4.7 4.2
 5.1
 1.8
 2.8
2.0
 1.6
1.4
 2.8
 2.1
 1.2
18 LOC4345435 thioredoxin-like protein CITRX, chloroplastic 4345435 OSNPB_080378900 4.7 5.0
 4.3
 1.9
 2.3
1.9
 1.0
0.9
 4.5
 0.1
 0.7
0.3
19 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 4.6 4.2
 5.0
 4.3
 1.0
 1.6
 1.3
 1.5
-0.3
 1.9
20 LOC4350988 GTPase Der 4350988 Os11g0638000 4.6 4.3
 4.9
 4.6
 4.7
 3.9
 5.5
 0.4
 3.0
21 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 4.6 5.4
 3.7
 2.0
 2.9
2.1
 2.8
2.3
 4.4
 1.2
0.7
 2.2
0.5
22 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 4.5 4.5
 4.6
 3.4
 3.1
 3.4
 4.2
 3.6
 2.4
23 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 4.5 3.7
 5.4
 3.7
 2.2
 1.4
 1.3
 1.0
0.8
 2.4
24 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 4.5 5.2
 3.8
 4.9
 2.3
 1.3
 4.2
 2.1
 1.6
25 LOC4344232 probable GTP-binding protein OBGC1, chloroplastic 4344232 Os07g0669250 4.5 4.8
 4.2
 3.8
 2.6
 2.6
 3.1
 2.2
 4.2
26 LOC4340929 uncharacterized LOC4340929 4340929 Os06g0332800 4.5 4.7
 4.2
 2.4
 4.2
2.2
 5.1
2.3
 5.7
 2.2
1.2
 2.0
27 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 4.4 4.8
 4.1
 3.5
 2.9
2.4
 2.5
2.0
 3.3
 0.2
 3.0
28 LOC4345533 tRNA modification GTPase MnmE 4345533 Os08g0407000 4.4 4.7
 4.2
 5.6
 2.4
1.9
 2.5
1.3
 2.5
 1.6
 1.3
29 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 4.4 5.1
 3.8
 3.1
-0.8
 5.5
4.2
 4.0
3.4
 5.9
 3.4
1.3
 3.4
-0.4
30 LOC9271200 ribosomal RNA small subunit methyltransferase, chloroplastic 9271200 Os02g0122900 4.4 6.2
 2.6
 6.2
 1.0
0.7
 1.8
1.1
 3.8
 1.5
 1.7
31 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 4.4 3.9
 4.9
 0.9
 2.2
 0.5
 4.1
2.3
 1.7
1.5
 1.6
32 LOC4350679 uncharacterized protein At3g49140 4350679 Os11g0544000 4.4 4.5
 4.3
 8.9
3.3
 4.6
4.4
 4.7
3.6
 4.9
2.1
 4.1
2.7
 2.8
33 LOC4340049 probable ribosome-binding factor A, chloroplastic 4340049 Os06g0137600 4.4 5.9
 2.9
 3.7
 4.6
 4.0
 2.9
 1.5
 4.3
34 LOC4351767 uncharacterized protein ycf45 4351767 Os12g0209000 4.4 4.1
 4.7
 4.2
 2.4
 1.4
 0.7
3.8
35 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 4.4 5.1
 3.6
 2.7
 2.7
0.7
 1.6
1.4
 2.5
 1.7
 2.3
36 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 4.4 4.2
 4.5
 4.4
 4.1
 3.5
 2.4
2.4
37 LOC4351647 monothiol glutaredoxin-S12, chloroplastic-like 4351647 OSNPB_120175500 4.4 5.3
 3.5
 0.5
 3.3
2.5
 4.7
3.3
 4.1
 2.1
 1.6
38 LOC4339922 superoxide dismutase [Fe] 1, chloroplastic-like 4339922 OSNPB_060115400 4.4 4.1
 4.6
 2.8
-0.0
 3.5
1.3
 1.9
1.4
 3.2
3.0
 0.6
0.5
 2.1
39 LOC4324908 rhodanese-like domain-containing protein 4A, chloroplastic 4324908 Os01g0889800 4.3 4.0
 4.6
 3.5
 2.9
2.2
 2.6
0.6
 3.0
 2.3
 3.2
40 LOC4328774 peroxisomal nicotinamide adenine dinucleotide carrier 4328774 Os02g0225000 4.3 5.2
 3.4
3.0
2.7
 3.1
2.8
 2.4
1.2
41 LOC4324676 uncharacterized LOC4324676 4324676 Os01g0558800 4.3 4.6
 4.0
 5.1
 3.2
2.0
 1.7
1.1
 2.9
 1.4
 1.0
42 LOC4325481 protein root UVB sensitive 5 4325481 Os01g0141600 4.3 3.6
 4.9
 4.6
 1.9
0.7
 1.2
1.2
 1.5
 1.3
 1.0
43 LOC4331225 uncharacterized LOC4331225 4331225 Os02g0827600 4.2 3.6
 4.8
 3.6
 3.6
2.4
 2.6
1.5
 0.8
 2.2
 2.3
44 LOC4325168 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 4325168 Os01g0271400 4.2 4.6
 3.8
 1.8
 3.2
2.4
 1.6
1.4
 5.3
 1.8
 1.1
45 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 4.2 4.5
 3.8
 3.6
 2.8
 3.3
 3.7
 1.3
 1.6
46 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 4.2 5.4
 3.0
2.8
 1.5
 3.1
 2.7
47 LOC4333109 uncharacterized LOC4333109 4333109 Os03g0414400 4.2 4.9
 3.4
 3.0
 2.3
 2.5
 0.6
 0.4
 2.0
48 LOC4331681 photosynthetic NDH subunit of subcomplex B 2, chloroplastic 4331681 Os03g0158300 4.1 4.4
 3.8
 1.5
 -0.4
-0.4
 -0.4
-1.0
 -0.1
 1.0
 1.0
49 LOC4326942 uncharacterized LOC4326942 4326942 Os01g0930000 4.1 3.4
 4.7
 1.7
 0.4
 0.4
 0.1
 -0.1
 0.1
50 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 4.1 5.3
 2.8
 1.4
0.4
 1.2
1.0
 0.8
-0.3
 0.9
0.7
 1.0
0.5
 0.9
0.4
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