Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4324714   pseudouridylate synthase 7 homolog 
 osa-r.5   4324714   pseudouridylate synthase 7 homolog 
 osa-u.4   9272465   multisubstrate pseudouridine synthase 7 
 ath-u.4   AT3G04820   Pseudouridine synthase family protein 
 gma-u.4   100795469   multisubstrate pseudouridine synthase 7 
 gma-u.4   100780786   multisubstrate pseudouridine synthase 7 
 sly-u.4   101266072   multisubstrate pseudouridine synthase 7 
 ppo-u.4   18098950   multisubstrate pseudouridine synthase 7 
 mtr-u.4   11429618   multisubstrate pseudouridine synthase 7 

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Top 50 coexpressed genes to 4324714 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  3 70 3.36
 osa360   Phenylalanine metabolism  1 43 -
 osa350   Tyrosine metabolism  1 44 -
 osa3018   RNA degradation  2 112 -
 osa270   Cysteine and methionine metabolism  1 122 -

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osa:LOC4324714 (pseudouridylate synthase 7 homolog) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4324714
osa-r.5
for
4324714
osa-u.4
for
9272465
ath-u.4
for
AT3G04820
gma-u.4
for
100795469
gma-u.4
for
100780786
sly-u.4
for
101266072
ppo-u.4
for
18098950
mtr-u.4
for
11429618
1 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 3.8 5.1
 5.4
 4.8
 3.6
 2.2
 5.7
 2.2
 3.1
2 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 3.7 5.0
 1.9
 5.4
 3.1
 1.6
 1.7
 2.9
 3.6
3 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 3.5 4.7
 1.3
 0.0
 0.9
0.5
 2.3
1.0
 0.2
 0.2
0.1
 1.9
4 LOC4332018 methionine--tRNA ligase, chloroplastic/mitochondrial 4332018 Os03g0209600 3.5 4.7
 1.5
 1.7
 2.5
2.2
 3.7
1.8
 -0.1
 -0.0
 1.6
5 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 3.3 4.4
 1.8
0.1
 0.9
0.2
 0.0
-0.5
 -1.3
-1.4
 4.0
0.3
 1.1
1.0
 -0.6
6 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 3.3 4.5
 0.8
-0.4
 0.8
 1.5
1.3
 1.1
0.8
 0.2
 1.3
 0.7
7 LOC4330866 separase 4330866 Os02g0770700 3.2 4.5
 2.1
 1.2
 0.9
0.1
 1.1
0.6
 2.4
 2.3
 3.4
8 LOC4337316 cell division protein FtsZ homolog 1, chloroplastic 4337316 Os04g0665400 3.1 4.4
 1.9
 1.9
 2.7
2.1
 0.3
0.3
 1.9
0.1
 1.8
 0.9
0.8
9 LOC4336345 DNA mismatch repair protein MSH1, mitochondrial 4336345 Os04g0507016 3.1 4.0
 3.1
 3.7
 2.1
1.4
 2.3
2.3
 1.8
 4.1
 3.0
10 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 3.0 3.6
 0.5
0.3
 0.5
 -0.8
 2.1
11 LOC4333992 ribosomal RNA small subunit methyltransferase E 4333992 Os03g0729700 3.0 4.2
 -1.4
 1.5
 0.5
 0.5
 1.7
 1.9
 2.1
12 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 3.0 3.5
 1.5
 0.7
 -0.0
-0.7
 1.1
0.9
 -0.8
 0.4
 1.3
13 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 3.0 3.7
 1.5
 3.0
 2.0
0.3
 2.4
2.0
 1.8
 1.4
 2.6
14 LOC4341808 twinkle homolog protein, chloroplastic/mitochondrial 4341808 Os06g0671700 3.0 3.7
 4.5
 3.2
 3.4
1.8
 2.4
1.9
 6.0
 2.9
 2.9
15 LOC4327479 cysteine synthase-like 4327479 Os01g0814800 2.9 3.8
 0.3
 3.9


2.1
 1.3
16 LOC4351665 dynamin-like protein ARC5 4351665 2.9 4.0
 2.1
 0.8
 1.1
 2.0
 0.6
 1.9
 1.1
17 LOC4352911 uncharacterized protein YtfP 4352911 Os12g0638800 2.9 4.3
 0.9
 3.3
 1.1
 1.7
 2.0
 2.0
 2.2
18 wsl3 white stripe leaf3 4348823 Os10g0462800 2.8 3.9
 0.9
 2.2
 1.1
0.6
 1.2
1.2
 1.6
 1.3
 0.8
19 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 2.8 3.3
 -0.1
 2.6
 1.5
1.1
 2.3
1.6
 1.7
 1.5
 0.6
20 LOC4339686 pentatricopeptide repeat-containing protein At1g15510, chloroplastic 4339686 Os05g0574800 2.8 3.9
 1.7
 3.3
 0.4
 1.0
 2.1
 1.1
 0.5
21 LOC9269607 uncharacterized LOC9269607 9269607 Os02g0266500 2.8 3.5
 3.6
 1.7
 1.5
 2.7
 3.2
 2.2
 3.1
22 LOC9271035 DNA topoisomerase 1 9271035 Os06g0281400 2.8 3.5
 3.1
0.5
 5.6
 3.2
1.4
 2.0
1.7
 4.8
 2.7
 2.4
23 LOC9268625 uncharacterized aarF domain-containing protein kinase 1 9268625 Os11g0549635 2.8 4.0
 2.7
 1.5

-1.4
 1.0
 2.2
24 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 2.8 3.3
 0.7
 2.8
 1.6
 0.8
 2.2
 0.7
 0.6
25 LOC4336596 O-fucosyltransferase 29 4336596 Os04g0551300 2.8 3.8
 0.1
 1.5
 0.6
0.6
 1.9
0.7
 1.6
0.6
 2.5
0.3
 1.0
0.2
26 LOC4334190 upstream activation factor subunit UAF30 4334190 Os03g0761000 2.7 4.0
 5.0
1.2
 2.3
0.9
 2.0
0.7
 0.2
-0.3
 4.2
4.1
 1.0
0.8
 3.0
-0.7
27 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 2.7 3.6
 1.1
 2.5
 0.1
 1.4
 1.1
 3.3
1.4
 2.1
28 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 2.7 3.4
 0.9
 0.8
 -1.3
-1.5
 -0.3
-1.4
 -0.3
 1.3
0.7
 0.4
29 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 2.7 3.3
 1.8
 1.9
 2.4
2.3
 1.0
0.0
 2.1
 -0.8
 1.8
30 LOC9269712 ABC transporter A family member 7 9269712 Os09g0360900 2.7 3.6
 2.1
-0.3
 0.6
-0.2
 0.2
0.1
 1.0
0.2
 1.5
-0.1
 -0.1
-0.4
 1.3
0.4
31 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 2.7 3.6
 0.6
 0.5
 -0.1
 -0.0
 0.7
 0.5
 1.5
32 LOC4343080 tryptophan decarboxylase 2-like 4343080 OSNPB_070437500 2.6 3.5
 0.3
 0.3
-0.0
 0.0
 -0.5
 -0.8
 0.5
 0.9
-0.2
33 LOC4345533 tRNA modification GTPase MnmE 4345533 Os08g0407000 2.6 3.2
 2.3
 1.0
 1.9
0.1
 2.3
-0.3
 0.8
 1.4
 0.7
34 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 2.6 3.4
 -0.2
 4.1
 2.2
 0.9
 2.3
 2.0
 1.4
35 LOC4331958 protein CLT2, chloroplastic 4331958 Os03g0199000 2.6 3.7
 0.5
-0.3
 1.0
 0.0
-0.1
 0.5
0.1
 0.5
1.1
36 LOC4324505 aspartate--tRNA ligase, chloroplastic/mitochondrial 4324505 Os01g0153400 2.6 3.1
 0.8
 3.1
 2.3
1.4
 2.6
2.2
 1.1
 1.9
1.7
 1.3
1.2
37 LOC4331296 CCR4-NOT transcription complex subunit 1 4331296 Os03g0102366 2.6 3.6
 1.8
1.2
 0.4
 0.7
0.0
 1.3
1.0
 -0.4
 1.6
1.0
 1.1
38 LOC4333402 fructokinase-like 2, chloroplastic 4333402 Os03g0602600 2.6 3.4
 1.0
 2.9
 2.7
2.3
 0.5
0.3
 3.8
 1.2
 2.1
39 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 2.6 3.1
 0.5
 1.1
 -1.2
-1.2
 -1.0
-1.3
 -0.4
 -0.4
 1.8
40 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 2.6 3.2
 5.0
-0.0
 0.6
0.5
 3.3
1.8
 4.0
3.5
 1.8
1.3
 1.7
-0.3
 3.0
1.0
41 LOC4337150 DNA polymerase I A, chloroplastic-like 4337150 Os04g0637400 2.6 3.3
 5.3
3.1
 3.4
3.4
 2.1
1.9
 2.9
1.7
 3.8
 3.3
2.3
 2.3
2.0
42 LOC4347814 protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 4347814 Os09g0555600 2.5 3.2
 0.9
 2.1
 0.7
 3.4
 -0.2
 1.2
 0.8
43 LOC4345983 putative tRNA (cytidine(34)-2'-O)-methyltransferase 4345983 Os08g0506500 2.5 3.6
 -0.2
 0.5
 1.4
 2.2
 0.4
 1.2
 0.8
44 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 2.5 3.2
 4.4
1.5
 5.7
3.6
 5.1
4.2
 1.2
0.7
 4.7
 4.2
1.8
 3.2
2.2
45 LOC9272594 guanine nucleotide-binding protein alpha-1 subunit 9272594 Os05g0341300 2.5 3.3






46 LOC9271459 nucleotide-sugar uncharacterized transporter 2 9271459 Os06g0297600 2.5 3.1
 1.0
0.3
 -0.6
-0.6
 2.1
1.8
 2.8
1.3
 0.5
0.4
 0.9
0.8
 0.3
-0.9
47 LOC4332899 uncharacterized LOC4332899 4332899 Os03g0363400 2.5 3.0
 3.0
 1.4
 -0.7
 0.3
 -0.7
 0.8
 0.0
-0.7
48 LOC4336939 putrescine hydroxycinnamoyltransferase 1-like 4336939 Os04g0609500 2.5 3.5
 0.2
0.1
 0.3
-0.2
 -0.7
 -0.9
 -0.0
 -0.2
 -0.3
-0.5
49 LOC9269203 tRNase Z TRZ2, chloroplastic 9269203 Os09g0482680 2.5 3.0
 2.2
-0.4
 2.9
2.1
 3.2
2.5
 1.6
0.6
 2.4
-0.1
 1.0
0.6
 1.9
1.5
50 LOC4328366 protein IRX15-LIKE 4328366 Os02g0158500







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