Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4324854   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 osa-r.5   4324854   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 osa-m.8   4324854   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 ath-u.4   CRR2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100792118   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 gma-u.4   100790667   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 sly-u.4   101258814   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 ppo-u.4   7481515   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 mtr-u.4   11421145   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 

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Top 50 coexpressed genes to 4324854 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  1 41 -
 osa480   Glutathione metabolism  1 114 -
 osa500   Starch and sucrose metabolism  1 173 -

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osa:LOC4324854 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4324854
osa-r.5
for
4324854
osa-m.8
for
4324854
ath-u.4
for
CRR2
gma-u.4
for
100792118
gma-u.4
for
100790667
sly-u.4
for
101258814
ppo-u.4
for
7481515
mtr-u.4
for
11421145
1 LOC4333282 pentatricopeptide repeat-containing protein At1g09900 4333282 Os03g0569800 4.9 7.1
 2.8





2 LOC4351344 uncharacterized LOC4351344 4351344 Os12g0118800 4.1 3.6
 4.5





3 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 3.7 5.1
 2.3
 2.7
 2.7
2.2
 1.1
0.4
 4.2
 2.0
 1.2
4 LOC4348934 pentatricopeptide repeat-containing protein At1g09820 4348934 Os10g0484300 3.6 5.4
 1.9





5 LOC4336289 uncharacterized LOC4336289 4336289 Os04g0497900 3.5 5.2
 1.8
 3.9
 3.3
 2.7
 4.7
 1.8
 1.3
6 LOC4344399 two-component response regulator-like PRR37 4344399 OSNPB_070695100 3.5 1.6
 5.4
 1.5
-0.1
 0.0
-0.3
 2.8
2.4
 -0.3
 0.5
-0.2
 3.3
2.2
7 LOC4329761 transcription termination factor MTEF1, chloroplastic 4329761 Os02g0577501 3.4 4.2
 2.5
 2.2
-0.3
 1.4
1.0
 2.5
0.6
 3.9
0.0
 1.8
1.1
 1.3
0.3
8 LOC9267240 pentatricopeptide repeat-containing protein At4g01400, mitochondrial 9267240 Os09g0532500 3.3 5.1






9 LOC4334814 pentatricopeptide repeat-containing protein At4g25270, chloroplastic 4334814 Os03g0852700 3.3 4.4
 2.2
 2.0
 3.1
 2.5
 5.6
 2.8
 0.9
10 LOC4345375 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 4345375 OSNPB_080360100 3.3 3.3
 3.2
 1.0
 0.6
 0.4
 0.5
 1.3
1.2
 2.2
11 LOC9268967 uncharacterized LOC9268967 9268967 Os05g0117864 3.3 2.4
 4.2
 3.2
 0.2
 -1.0
 1.0
 0.1
-0.3
 1.6
12 LOC4347017 pentatricopeptide repeat-containing protein At4g02750 4347017 Os09g0407800 3.2 5.2

2.8
 1.4
 3.8
0.2
13 LOC4330592 protein TIC 20-v, chloroplastic 4330592 Os02g0726600 3.1 4.0
 2.2
 0.5
 2.8
2.1
 4.0
1.7
 1.6
 1.2
 0.9
14 LOC4326311 ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like 4326311 OSNPB_010574500 3.1 3.6
 2.6
 2.2
 0.6
0.3
 -0.1
-0.1
 1.5
1.1
 -0.4
 -0.2
15 LOC4334819 transcriptional repressor ILP1 4334819 Os03g0853700 3.0 4.1
 1.9
 0.7
 0.6
-0.1
 0.4
0.2
 0.4
 0.7
 0.9
16 LOC4346468 protein CLMP1 4346468 Os09g0135400 3.0 3.8
 2.1
 2.5
 3.3
3.1
 3.1
2.8
 3.9
3.2
 2.4
1.9
 1.2
17 LOC4333330 pentatricopeptide repeat-containing protein At3g24000, mitochondrial 4333330 Os03g0582100 3.0 4.3
 1.7





18 LOC4342361 uncharacterized LOC4342361 4342361 Os07g0137900 2.9 0.7
 5.2
 -1.1
 1.7
1.5
 1.4
1.1
 1.1
 0.5
 1.5
19 LOC4348896 pentatricopeptide repeat-containing protein At1g08610 4348896 Os10g0476900 2.9 4.1
 1.7





20 LOC4333802 uncharacterized LOC4333802 4333802 Os03g0695500 2.9 3.3
 2.5
 0.7
 1.8
 3.0
 0.4
 0.1
 -0.6
21 LOC4339985 nucleolar protein 10 4339985 Os06g0128400 2.9 1.1
 4.8
 1.5
 2.1
0.5
 1.3
-0.4
 3.9
 1.3
 0.8
22 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 2.9 3.7
 2.0
 3.7
 1.6
 3.1
 2.1
2.2
23 LOC4326280 auxilin-related protein 1 4326280 Os01g0355500 2.9 1.5
 4.3
 0.1
-0.1
 -0.7
-0.8
 -0.5
-1.2
 -0.3
-0.4
 -0.1
-0.7
 0.2
-0.6
24 LOC4335870 uncharacterized protein At4g26450 4335870 Os04g0431000 2.8 3.8
 1.9





25 LOC9269748 pentatricopeptide repeat-containing protein At4g18520, chloroplastic 9269748 Os03g0644200 2.8 3.3
 2.4
 3.6
 2.2
 5.7
 3.6
 4.0
 1.9
26 LOC9268979 pentatricopeptide repeat-containing protein At4g01570 9268979 Os03g0712900 2.8 2.2
 3.4
 4.9
 1.2
 0.4
 2.2
 2.3
 1.7
27 LOC4341929 pentatricopeptide repeat-containing protein At3g61360 4341929 Os06g0694600 2.8 4.3
4.6
 1.4
 2.4
 0.2
 1.8
 -0.2
28 LOC4339430 pentatricopeptide repeat-containing protein At3g49240, mitochondrial 4339430 Os05g0534000 2.8 3.8
 1.8
1.5
0.9
 1.6
1.6
 5.4
 3.2
 1.7
0.3
29 LOC4342622 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 4342622 Os07g0191500 2.8 3.5
 2.1
 2.3
 1.2
 0.7
 4.6
 6.0
 1.4
30 LOC4340880 BTB/POZ domain-containing protein At2g04740 4340880 Os06g0318200 2.8 3.1
 2.5
 1.7
 0.8
 0.5
 0.5
 0.8
 1.0
31 LOC4350893 pentatricopeptide repeat-containing protein At4g19890 4350893 Os11g0607100 2.7 3.6
 1.9
 2.1
 1.6
 1.3
 1.1
 5.4
 1.2
1.1
32 LOC9270353 5-oxoprolinase 9270353 Os01g0966000 2.7 1.6
 3.9
 4.8
 1.7
 0.5
 2.0
 1.1
 1.0
33 LOC4325314 pentatricopeptide repeat-containing protein At3g54980, mitochondrial 4325314 Os01g0611900 2.7 3.9
 1.6





34 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 2.7 3.3
 2.2
 0.5
 2.3
2.0
 1.8
1.3
 3.1
 2.6
 0.7
35 LOC4348008 uncharacterized LOC4348008 4348008 Os10g0124100 2.7 2.4
 3.0





36 LOC4349489 probable plastid-lipid-associated protein 3, chloroplastic 4349489 OSNPB_100575700 2.7 3.6
 1.7
 0.1
 1.8
 1.0
 -0.1
-1.2
 1.5
0.9
 0.7
37 LOC4327403 pentatricopeptide repeat-containing protein At5g39980, chloroplastic 4327403 Os01g0833000 2.7 2.1
 3.3
 4.9
 2.5
2.5
 2.9
2.5
 3.3
 7.1
 0.3
38 LOC4335071 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 4335071 2.6 3.5
 1.7
 2.8
 3.7
3.4
 6.6
5.7
 3.8
3.4
 2.6
 1.2
0.8
39 LOC4340626 LRR receptor-like serine/threonine-protein kinase ERL1 4340626 2.6 1.2
 4.0





40 LOC107275814 probable trehalose-phosphate phosphatase 6 107275814 OSNPB_080409100 2.6 4.0
0.4
-0.1
 0.5
0.1
 0.7
0.3
 -0.1
-0.3
 -0.0
-0.1
 0.2
-0.6
41 LOC4328457 ribosomal RNA large subunit methyltransferase I 4328457 Os02g0173700 2.6 1.8
 3.4
 0.1
 1.9
 1.0
0.0
 2.8
42 LOC4326576 peptide deformylase 1B, chloroplastic-like 4326576 OSNPB_010637600 2.6 3.8
 1.3
 -0.6
 2.1
0.6
 1.4
1.1
 1.0
 1.5
 1.7
43 LOC4352665 uncharacterized LOC4352665 4352665 Os12g0587200 2.6 3.2
 1.9





44 KIN14I kinesin-like protein KIN-14I 4337322 OSNPB_040666900 2.5 1.9
 3.1
 -0.3
 0.3
-0.4
 1.2
0.4
 0.3
 -0.3
-0.3
 1.1
-0.2
45 LOC9270554 transcription elongation factor SPT6-like 9270554 Os05g0494900 2.5 1.6
 3.5
 2.1
-0.2
 -0.3
-0.4
 -1.3
-1.4
 0.2
 0.0
-1.6
 0.6
-0.1
46 LOC4329696 CLP protease regulatory subunit CLPX1, mitochondrial 4329696 Os02g0564400 2.5 2.7
 2.3
 1.2
0.9
 0.7
-0.2
 0.5
-1.5
 0.1
-1.1
 -0.2
-2.6
 -0.6
47 LOC4337044 transcription factor GTE7 4337044 Os04g0623100 2.5 2.7
 2.3





48 LOC4325891 casein kinase 1-like protein 3 4325891 Os01g0231500 2.5 2.7
 2.4
 -0.2
-2.1
 -0.6
-0.7
 -0.4
-0.8
 -1.3
-1.5
 0.1
 0.2
-0.5
49 LOC4351981 lysine-specific demethylase REF6 4351981 Os12g0279100 2.5 1.9
 3.1





50 LOC4329356 probable sodium/metabolite cotransporter BASS3, chloroplastic 4329356 OSNPB_020475400 2.5 2.5
 2.5
 1.7
 -0.0
 0.7
 1.2
 1.2
 0.8
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