Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4325059   protein TRANSPARENT TESTA 1 
 osa-r.5   4325059   protein TRANSPARENT TESTA 1 
 osa-m.8   4325059   protein TRANSPARENT TESTA 1 
 osa-u.4   4346617   zinc finger protein WIP2 
 osa-u.4   9271702   zinc finger protein WIP2 
 gma-u.4   100800644   zinc finger protein WIP3 
 sly-u.4   101257840   zinc finger protein WIP2 
 ppo-u.4   7466819   zinc finger protein WIP3 
 mtr-u.4   112421394   zinc finger protein WIP2-like 

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Top 50 coexpressed genes to 4325059 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa100   Steroid biosynthesis  1 40 -
 osa904   Diterpenoid biosynthesis; Including: Gibberellin biosynthesis  1 40 -
 osa592   alpha-Linolenic acid metabolism  1 58 -
 osa4016   MAPK signaling pathway - plant  2 158 -
 osa520   Amino sugar and nucleotide sugar metabolism  1 162 -

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osa:LOC4325059 (protein TRANSPARENT TESTA 1) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4325059
osa-r.5
for
4325059
osa-m.8
for
4325059
osa-u.4
for
4346617
osa-u.4
for
9271702
gma-u.4
for
100800644
sly-u.4
for
101257840
ppo-u.4
for
7466819
mtr-u.4
for
112421394
1 LOC4351500 phytosulfokines 5-like 4351500 OSNPB_120147800 4.9 4.0
 5.8
 0.4
-0.3
 0.8
0.1
 2.0
1.4
 -0.5
-1.0
 -0.1
-0.3
 0.5
2 LOC4349848 vegetative cell wall protein gp1 4349848 Os11g0160400 4.7 3.8
 5.7





3 LOC4338934 protein TRANSPARENT TESTA 1 4338934 Os05g0444200 4.6 3.6
 5.6
 2.1
1.5
 3.4
1.5
 1.7
1.2
 1.6
1.2
 5.2
1.2
 3.4
3.3
4 LOC4339739 WRKY transcription factor 23 4339739 Os05g0583000 4.6 3.4
 5.8





5 LOC4342946 putative lipid-transfer protein DIR1 4342946 Os07g0290200 4.6 5.5
 3.6
 -0.1
-0.3
 0.4
-0.3
 0.0
-0.2
 0.8
0.1
 1.1
0.2
 0.0
-0.2
6 LOC4349160 uncharacterized LOC4349160 4349160 Os10g0524300 4.3 3.7
 5.0





7 LOC4333872 chemocyanin 4333872 Os03g0709300 4.1 3.3
 4.8
 0.5
-0.1
 0.5
-0.5
 1.3
1.0
 0.3
 1.3
1.1
 1.4
0.6
8 LOC4347403 aspartyl protease family protein At5g10770 4347403 Os09g0482200 4.0 2.9
 5.2
 -0.0
-0.1
 1.4
0.6
 1.1
0.3
 0.2
 2.6
2.2
 -0.8
-1.1
9 LOC9271072 extensin 9271072 Os04g0419100 3.9 2.8
 4.9





10 LOC4348767 glycine-rich cell wall structural protein 2-like 4348767 Os10g0450800 3.8 3.6
 4.0





11 LOC4326690 WRKY transcription factor 71 4326690 Os01g0626400 3.8 3.0
 4.6
 0.2
0.2
 1.3
0.7
 1.0
1.0
 0.5
0.3
 1.5
0.5
 0.4
0.3
12 LOC4346120 triacylglycerol lipase 2 4346120 Os08g0529800 3.4 2.3
 4.5
 0.4
 0.7
 -0.1
 1.1
0.3
 0.5
 1.4
13 LOC4333923 cortical cell-delineating protein 4333923 Os03g0718800 3.4 1.7
 5.1
 -0.6
 -0.2



14 LOC4350385 adenine/guanine permease AZG2 4350385 Os11g0427700 3.4 2.9
 3.9
 -0.3
 -0.6
 -1.1
-1.4
 0.6
-0.5
15 LOC4349947 uncharacterized LOC4349947 4349947 Os11g0182100 3.4 2.6
 4.1
 0.1
 0.4



16 LOC4345292 uncharacterized LOC4345292 4345292 3.4 3.6
 3.1





17 LOC4351869 putative glycine-rich cell wall structural protein 1 4351869 Os12g0242100 3.3 2.6
 4.0





18 LOC4337107 transcription factor bHLH112 4337107 Os04g0631600 3.3 3.7
 2.9
 0.4
0.3
 0.3
0.3



19 LOC4330470 dof zinc finger protein DOF3.1 4330470 Os02g0707200 3.3 2.4
 4.2
 -0.1
 -0.4
 2.7
2.4
 1.0
0.9
 -0.3
-0.6
 1.6
20 LOC4325050 ethylene-responsive transcription factor ABR1 4325050 Os01g0868000 3.3 4.7
0.6
 0.9



21 LOC4345385 pirin-like protein 4345385 Os08g0364900 3.2 2.2
 4.3
 0.3
 1.1



22 LOC4351528 uncharacterized LOC4351528 4351528 Os12g0153200 3.2 2.8
 3.6
 1.0
0.3
 0.4
0.3
 1.0
0.8
 1.7
 2.8
1.2
 0.7
-0.4
23 LOC4332499 probable 2-oxoglutarate-dependent dioxygenase At5g05600 4332499 Os03g0289800 3.2 2.7
 3.7
 0.7
0.2
 1.0
-0.1
 0.3
-0.4
 -0.8
-0.9
 0.0
-0.1
 -0.2
-0.3
24 LOC4349457 NAC domain-containing protein 71 4349457 Os10g0571600 3.1 1.8
 4.4
 -0.0
 -0.1
 0.5
0.1
 0.2
-0.1
 2.2
1.2
 -0.1
25 LOC4325145 gibberellin 2-beta-dioxygenase 3-like 4325145 Os01g0757200 3.0 2.3
 3.8
 1.2
-0.2
 0.9
0.4
 0.3
-0.3
 2.4
0.3
 0.0
-0.5
 0.5
0.3
26 LOC4332423 cysteine-rich repeat secretory protein 55 4332423 Os03g0277700 3.0 3.4
 2.7
 0.4
0.1
 0.9
0.2
 1.2
 -0.4
 0.2
 0.6
27 LOC4342115 chitinase 1-like 4342115 OSNPB_060726200 3.0 3.0
 3.1
 0.8
0.2
 1.1
0.8
 -0.4
 -0.1
-1.0
 0.9
-0.0
 0.4
0.3
28 LOC4326519 glucan endo-1,3-beta-glucosidase GII 4326519 Os01g0940800 3.0 3.4
 2.7
 1.0
0.9
 0.8
0.6
 1.0
0.8
 0.9
0.4
 2.5
1.3
 -0.2
-0.4
29 LOC4325993 endonuclease 2 4325993 Os01g0128100 3.0 1.7
 4.3
 1.0
 1.1
-0.3
0.7
-0.4
30 LOC4330171 putative glycine-rich cell wall structural protein 1 4330171 Os02g0651900 3.0 2.5
 3.5





31 LOC4337016 LRR receptor-like serine/threonine-protein kinase FLS2 4337016 Os04g0618700 3.0 2.4
 3.5
 -0.3
 1.0
 -0.1
-0.5
 0.6
-1.0
-0.6
32 LOC4326185 cysteine-rich receptor-like protein kinase 2 4326185 Os01g0548750 3.0 4.1
 1.8
 0.5
0.3
 -0.3
-0.4
 0.6
0.5
 0.2
-0.3
 0.7
-0.4
 0.2
33 LOC4345414 putative serine/threonine-protein kinase-like protein CCR3 4345414 Os08g0374701 3.0 2.3
 3.6
 0.4
0.3
 0.5
0.3



34 LOC4325140 uncharacterized LOC4325140 4325140 Os01g0756300 3.0 2.6
 3.3
 0.5
 0.7



35 LOC4341416 submaxillary gland androgen-regulated protein 3A 4341416 Os06g0591200 2.8 2.7
 2.9





36 LOC4343484 putative receptor-like protein kinase At4g00960 4343484 Os07g0538300 2.8 4.4
0.3
-0.1
 0.5
0.2



37 LOC4346584 uncharacterized LOC4346584 4346584 2.8 4.3






38 LOC4334013 uncharacterized LOC4334013 4334013 Os03g0734100 2.8 2.6
 2.9
 0.1
 -0.2



39 LOC4332705 WUSCHEL-related homeobox 6-like 4332705 OSNPB_030325600 2.7 3.7
-0.1
-0.4
 -0.0
-0.5
 -1.8
-2.0


40 LOC4336490 L-type lectin-domain containing receptor kinase IV.1 4336490 Os04g0531500 2.7 1.5
 3.9
 0.8
0.2
 0.6
0.1
 1.1
0.5
 0.5
-0.3
 1.0
0.6
 0.5
0.3
41 LOC107278754 ethylene-responsive transcription factor ERF110 107278754 Os02g0521100 2.7 4.0
1.1
0.5
 1.1
0.6
 0.6
0.5
 -0.4
-0.6
 1.3
0.2
 0.7
0.6
42 LOC4335869 subtilisin-like protease SBT1.7 4335869 Os04g0430700 2.7 2.3
 3.1
 0.3
 -0.1



43 LOC4337549 polygalacturonase inhibitor 4337549 Os05g0104200 2.6 4.1
0.0
-0.2
 0.7
-0.1
 0.7
0.2
 0.1
-0.4
 1.0
0.4
 -0.2
-0.5
44 LOC4326125 rust resistance kinase Lr10 4326125 Os01g0113300 2.6 2.5
 2.7
 1.4
1.3
 1.1
0.4
 0.8
0.5
 1.0
0.8
 1.5
0.9
 1.5
1.3
45 LOC4339738 serine carboxypeptidase-like 50 4339738 Os05g0582800 2.6 2.1
 3.1
 -0.0
-0.1
 0.6
0.4
 0.7
0.1
 0.1
-1.1
 0.2
-0.4
 0.7
-1.0
46 LOC4341417 submaxillary gland androgen-regulated protein 3A 4341417 Os06g0591500 2.6 2.7
 2.4





47 LOC4351606 ethylene-responsive transcription factor ERF110 4351606 Os12g0168100 2.6 1.9
 3.3
 1.1
0.5
 1.1
0.6
 0.6
0.5
 -0.4
-0.6
 1.3
0.2
 0.7
0.6
48 LOC4347813 phytoene synthase 2, chloroplastic 4347813 OSNPB_090555500 2.5 2.4
 2.6
 0.1
0.1
 0.2
0.1
 0.2
-0.5
 0.6
-0.4
 1.1
0.7
 -0.1
-0.1
49 LOC4337254 rust resistance kinase Lr10 4337254 Os04g0655300 2.5 2.7
 2.3
 0.6
-0.4
 0.6
-0.1
 0.8
0.0

0.5
-0.2
50 LOC4340490 putative 12-oxophytodienoate reductase 2 4340490 OSNPB_060216200

0.4
0.2
 0.5
0.1
 -0.6
-1.3
 0.8
-0.3
 0.4
0.2
 0.1
-0.1
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