Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4325041   DNA repair protein recA homolog 3, mitochondrial 
 osa-r.5   4325041   DNA repair protein recA homolog 3, mitochondrial 
 osa-m.8   4325041   DNA repair protein recA homolog 3, mitochondrial 
 osa-u.4   4350329   protein RecA 
 ath-u.4   RECA2   recA DNA recombination family protein 
 gma-u.4   100807627   DNA repair protein recA homolog 3, mitochondrial 
 gma-u.4   100798983   DNA repair protein recA homolog 3, mitochondrial 
 sly-u.4   101260233   DNA repair protein recA homolog 3, mitochondrial 
 ppo-u.4   18107678   DNA repair protein recA homolog 3, mitochondrial 
 ppo-u.4   7497607   DNA repair protein recA homolog 3, mitochondrial 
 mtr-u.4   25494222   DNA repair protein recA homolog 3, mitochondrial 
 mtr-u.4   11440646   DNA repair protein recA homolog 3, mitochondrial 

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Top 50 coexpressed genes to 4325041 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3008   Ribosome biogenesis in eukaryotes  5 86 5.99
 osa3018   RNA degradation  3 107 2.83
 osa3020   RNA polymerase  2 52 2.27
 osa240   Pyrimidine metabolism  2 62 2.12
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4325041 (DNA repair protein recA homolog 3, mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4325041
osa-r.5
for
4325041
osa-m.8
for
4325041
osa-u.4
for
4350329
ath-u.4
for
RECA2
gma-u.4
for
100807627
gma-u.4
for
100798983
sly-u.4
for
101260233
ppo-u.4
for
18107678
ppo-u.4
for
7497607
mtr-u.4
for
25494222
mtr-u.4
for
11440646
1 LOC9270208 protein RRP6-like 2 9270208 Os10g0437200 10.2 9.0
 11.4
 1.1
-0.4
 3.7
0.7
 1.7
1.5
 1.0
0.4
 3.0
 2.5
1.9
 1.7
1.6
 1.7
1.7
 1.1
0.6
2 LOC4331976 elongator complex protein 5 4331976 Os03g0201700 9.6 6.6
 12.6
 0.2
 3.4
 -0.4
-1.1
 -0.4
-0.7
 1.6
 2.2
1.7
 1.2
0.9
 2.3
 2.0
3 LOC4331214 DEAD-box ATP-dependent RNA helicase 48-like 4331214 OSNPB_020826100 8.4 7.1
 9.7
 1.0
 5.9
 1.2
-0.6
 0.2
-2.2
 8.0
 3.6
3.3
 1.5
1.1
 3.3
 2.9
4 LOC4351600 nucleolar protein 6 4351600 Os12g0166500 8.3 7.6
 9.1
 -0.7
 5.3
 4.0
3.3
 2.9
2.1
 7.3
 3.2
 1.2
 4.1
 2.2
5 LOC4344789 DNA polymerase I A, chloroplastic-like 4344789 OSNPB_080175300 8.3 5.1
 11.4
 2.0
0.4
 2.4
1.6
 1.7
1.7
 2.3
0.5
 2.9
 3.5
1.1
 1.1
0.9
 1.7
1.4
 0.6
0.5
6 LOC4352003 coilin 4352003 Os12g0288801 8.1 7.5
 8.6
 0.3
 3.9
 1.5
0.5
 0.5
0.3
 3.1
-0.5
 3.6
2.7
 2.2
0.2
 0.5
 0.0
7 LOC9272465 multisubstrate pseudouridine synthase 7 9272465 Os05g0509300 8.0 5.7
 10.3
 -0.1
-0.9
 4.9
 0.8
0.7
 1.2
0.2
 8.7
 2.7
 2.4
 2.0
 2.1
8 LOC4328187 upstream activation factor subunit spp27 4328187 Os02g0130000 7.8 6.2
 9.4
 0.8
-1.0
 2.4
1.5
 3.3
1.0
 3.4
1.9
 6.4
3.2
 0.9
0.5
 2.2
0.2
 2.1
1.9
 3.6
1.0
9 LOC4333869 zinc finger protein VAR3, chloroplastic 4333869 Os03g0708900 7.6 6.4
 8.8
 -0.3
 3.9
 1.2
-0.0
 0.8
0.2
 5.4
 2.0
 -0.4
 4.0
 3.7
10 LOC4334667 pumilio homolog 24 4334667 Os03g0831100 7.4 5.5
 9.3
 -0.7
 6.2
 2.4
1.5
 1.3
1.3
 6.2
 3.4
2.7
 1.8
1.2
 4.0
 3.1
11 LOC4329995 polyribonucleotide nucleotidyltransferase 2, mitochondrial-like 4329995 OSNPB_020617700 7.4 7.1
 7.6
 -1.2
 5.4
 2.3
 1.8
 7.3
 3.5
 1.1
 3.9
 3.8
12 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 7.0 5.0
 9.1
 -0.5
 3.2
 2.4
1.6
 2.1
0.9
 10.3
 1.7
 -1.5
 4.2
-0.2
 2.3
-0.8
13 LOC4342673 rRNA biogenesis protein RRP5 4342673 Os07g0203300 7.0 6.6
 7.4
 -1.2
 4.3
 3.4
2.7
 1.9
1.0
 5.7
 3.4
 3.3
 3.4
 3.5
14 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 6.9 6.0
 7.9
 -1.4
 2.0
 2.0
 2.1
 4.3
 1.8
 2.7
 2.2
 4.1
15 LOC4329835 DNA mismatch repair protein PMS1 4329835 Os02g0592300 6.9 4.7
 9.1
 0.6
 2.4
 1.1
0.1
 2.1
0.1
 3.6
 2.3
 1.7
 0.4
 1.2
16 LOC4343142 tetratricopeptide repeat protein 27 homolog 4343142 Os07g0455100 6.9 7.2
 6.6
 -0.6
 4.0
0.4
 2.2
1.3
 1.1
-0.2
 5.4
 3.4
 2.4
 3.3
 2.9
17 LOC4325781 pentatricopeptide repeat-containing protein At4g01990, mitochondrial 4325781 Os01g0301000 6.9 5.3
 8.4
 0.3







18 LOC4346843 probable protein arginine N-methyltransferase 1 4346843 OSNPB_090359800 6.8 5.8
 7.9
 -0.9
 5.1
3.0
 2.6
2.0
 2.5
2.5
 6.5
5.4
 0.6
0.3
 1.4
1.1
 4.4
 4.9
19 LOC4336254 DNA-directed RNA polymerase III subunit 1 4336254 Os04g0492300 6.8 4.9
 8.7
 0.1
 0.7
 1.4
 0.3
 4.2
 2.4
 1.1
 2.6
1.2
 1.9
0.2
20 LOC4343611 elongator complex protein 1 4343611 Os07g0563700 6.8 6.0
 7.6
 -0.4
 3.3
 3.1
 1.7
 4.1
 3.1
2.8
 1.4
1.0
 4.2
 2.2
21 LOC4332841 probable nucleolar protein 5-2 4332841 Os03g0350300 6.8 3.9
 9.6
 -0.4
-1.4
 5.3
4.4
 2.8
2.5
 3.3
2.6
 9.3
3.8
 2.5
2.2
 2.3
1.3
 3.9
3.8
 3.4
3.0
22 LOC4350355 exosome complex component RRP43 4350355 Os11g0311300 6.7 6.1
 7.3
 -1.0
 6.3
 1.6
1.1
 1.6
0.7
 0.8
 2.8
1.3
 1.9
0.1
 2.2
 4.5
23 LOC4348184 chloride conductance regulatory protein ICln 4348184 Os10g0170000 6.7 5.8
 7.6
 0.5
0.1
 4.7
 2.1
0.3
 2.3
1.0
 3.5
 2.3
-0.0
 2.3
1.0
 2.5
 3.2
24 LOC4346491 DNA-directed RNA polymerase 1B, mitochondrial 4346491 Os09g0246200 6.7 7.8
 5.6
 -0.1
-0.3
 4.1
4.0
 2.9
1.7
 1.2
1.2
 7.8
3.3
 3.1
3.0
 1.7
1.7
 4.3
3.5
 2.7
1.0
25 LOC4325759 protein OSB3, chloroplastic/mitochondrial 4325759 Os01g0949060 6.7 6.2
 7.1
 -0.8
 6.6
3.0
 -1.1
 -0.5
 8.4
 0.8
 0.5
 2.4
 1.9
26 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 6.6 4.7
 8.6
 0.6
-0.7
 1.6
 0.3
-0.4
 0.3
0.3
 1.2
 2.1
1.0
 0.7
0.1
 3.4
2.9
 3.7
3.2
27 LOC4343805 pentatricopeptide repeat-containing protein At4g21705, mitochondrial 4343805 Os07g0598500 6.6 5.1
 8.1
 -0.4
 1.5
 1.8
1.8
 3.1
1.7
 5.2
5.0
 2.5
2.1
 1.3
0.2
 3.3
3.0
 3.0
1.3
28 LOC4345281 GMP synthase [glutamine-hydrolyzing] 4345281 Os08g0326600 6.5 5.4
 7.6
 -1.1
 3.8
 3.7
3.7
 3.4
2.3
 6.3
 1.9
 1.9
 3.7
 3.7
29 LOC4335539 uncharacterized LOC4335539 4335539 Os04g0347900 6.5 5.8
 7.2
 -1.0
 1.2
-0.7
 1.8
0.6
 2.4
2.0
 3.5
0.7
 2.0
0.8
 1.5
0.0
 1.6
1.0
 1.6
-0.2
30 LOC4344057 probable protein arginine N-methyltransferase 3 4344057 OSNPB_070640000 6.5 7.2
 5.8
 -2.2
 5.7
 3.3
3.1
 3.0
2.2
 8.3
 3.8
 2.1
 5.0
 3.2
31 LOC4338320 U3 small nucleolar RNA-associated protein 25 4338320 Os05g0295100 6.4 4.8
 8.1
 0.8
 3.9
 2.4
1.7
 1.0
1.0
 5.0
 2.5
 2.7
 2.4
0.0
 1.1
0.7
32 LOC4329409 DNA repair protein RAD50 4329409 Os02g0497500 6.4 5.1
 7.8
 0.4
 1.9
 -0.2
 0.5
 1.5
 1.0
 0.2
 1.4
 -0.1
33 LOC4344498 squamous cell carcinoma antigen recognized by T-cells 3 4344498 Os08g0113200 6.4 6.2
 6.7
 0.5
 3.7
 2.3
0.2
 1.1
-0.4
 0.1
 2.7
 1.1
 2.3
 0.3
34 LOC4332840 probable nucleolar protein 5-2 4332840 Os03g0350100 6.4 6.4
 6.5
 -0.4
-1.4
 5.3
4.4
 2.8
2.5
 3.3
2.6
 9.3
3.8
 2.5
2.2
 2.3
1.3
 3.9
3.8
 3.4
3.0
35 LOC4344865 nucleolin 1-like 4344865 OSNPB_080192900 6.4 4.7
 8.0
 -1.9
-2.0
 4.4
1.7
 2.6
2.4
 1.7
1.6
 6.6
 1.8
1.2
 1.6
1.4
 4.1
 2.6
36 LOC4335144 pumilio homolog 3 4335144 Os04g0201200 6.4 7.1
 5.6
 -0.3







37 LOC4338325 proline-, glutamic acid- and leucine-rich protein 1 4338325 Os05g0295900 6.3 5.6
 7.1
 -0.6
-1.3
 6.2
 3.0
2.2
 2.1
1.4
 7.5
 3.0
 1.1
 3.3
2.1
 2.7
1.8
38 LOC4331821 tubulin--tyrosine ligase-like protein 12 4331821 Os03g0179000 6.3 5.3
 7.2
 -0.4
 2.7
 1.0
 0.8
 5.8
 1.2
 -0.4
 1.6
 1.5
39 LOC4326176 nuclear pore complex protein NUP85 4326176 Os01g0746200 6.2 4.8
 7.6
 1.4
 1.5
 1.2
 0.9
 3.1
 4.5
 1.4
 1.7
 2.3
40 LOC4331982 uncharacterized LOC4331982 4331982 Os03g0203100 6.2 5.1
 7.2
 -1.7
 5.0
 1.9
1.3
 1.7
1.0
 6.3
 3.2
 1.5
 2.1
 2.9
41 LOC4342742 pentatricopeptide repeat-containing protein At1g80270, mitochondrial 4342742 Os07g0222700 6.1 4.8
 7.4
 -0.6
-1.5
 5.3
3.8
 3.1
3.0
 3.3
2.6
 6.1
 3.5
2.5
 2.8
0.9
 5.1
4.5
 5.3
3.6
42 LOC4348797 midasin 4348797 Os10g0456950 6.1 4.9
 7.2
 -0.8
 2.6
 1.3
1.1
 0.3
-0.0
 4.4
 3.4
 1.5
 2.3
 2.2
43 LOC4336046 NAP1-related protein 1-like 4336046 OSNPB_040459700 6.0 5.9
 6.1
 -1.0







44 LOC4325084 DNA repair RAD52-like protein 1, mitochondrial 4325084 5.9 5.5
 6.3
 -0.5
 1.9
 1.0
 0.8
 2.0
 1.3
 1.5
 1.8
 4.7
45 LOC9270457 DNA-directed RNA polymerase I subunit 2 9270457 Os10g0495600 5.9 8.1
-0.8
 5.1
 1.6
1.4
 1.0
0.6
 7.7
 2.8
 2.4
 4.7
 3.5
46 LOC4337763 putative TrmH family tRNA/rRNA methyltransferase 4337763 Os05g0141400 5.9 4.8
 6.9
 0.5
 1.2
 1.3
 1.0
 1.1
 1.4
 2.4
 3.2
 2.8
47 LOC4336241 ribosome-recycling factor 4336241 Os04g0490400 5.8 5.6
 6.1
 -1.3
 6.1
 3.7
 3.6
 6.8
 2.1
 0.8
 1.5
 2.5
48 LOC4336869 P-loop guanosine triphosphatase YjiA 4336869 Os04g0599700 5.8 5.5
 6.1
 0.1
2.9
 2.6
 8.2
 1.7
 0.7
 2.4
 2.4
49 LOC4347787 25S rRNA (cytosine-C(5))-methyltransferase nop2 4347787 Os09g0551300 5.8 6.3
 5.2
 -0.3
-0.8
 4.8
3.8
 4.4
3.3
 3.8
2.9
 4.5
3.7
 2.9
 2.0
 3.5
 3.6
50 LOC4332851 nucleolar protein 56 4332851 Os03g0352300 5.7 4.7
 6.8
 0.8
-2.1
 5.0
4.2
 3.0
3.0
 2.7
2.7
 7.2
 3.5
3.0
 2.5
2.3
 3.1
 4.2
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