Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4326401   probable dual-specificity RNA methyltransferase RlmN 
 osa-r.5   4326401   probable dual-specificity RNA methyltransferase RlmN 
 osa-m.8   4326401   probable dual-specificity RNA methyltransferase RlmN 
 ath-u.4   AT2G39670   Radical SAM superfamily protein 
 gma-u.4   100801657   probable dual-specificity RNA methyltransferase RlmN 
 gma-u.4   100818638   probable dual-specificity RNA methyltransferase RlmN 
 sly-u.4   101253790   probable dual-specificity RNA methyltransferase RlmN 
 ppo-u.4   7467549   probable dual-specificity RNA methyltransferase RlmN 
 mtr-u.4   11427515   probable dual-specificity RNA methyltransferase RlmN 

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Top 50 coexpressed genes to 4326401 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  3 70 3.36
 osa860   Porphyrin metabolism  2 42 2.45
 osa3060   Protein export  2 49 2.32
 osa10   Glycolysis / Gluconeogenesis  1 143 -
 osa3010   Ribosome  3 353 -

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osa:LOC4326401 (probable dual-specificity RNA methyltransferase RlmN) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4326401
osa-r.5
for
4326401
osa-m.8
for
4326401
ath-u.4
for
AT2G39670
gma-u.4
for
100801657
gma-u.4
for
100818638
sly-u.4
for
101253790
ppo-u.4
for
7467549
mtr-u.4
for
11427515
1 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 7.3 6.0
 8.7
 3.1
 2.2
 2.7
 5.1
 3.2
 4.3
2 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 7.1 7.6
 6.7
 2.3
 4.2
2.0
 2.1
2.1
 5.0
 2.8
 1.8
3 LOC4344710 nucleolar GTP-binding protein 1 4344710 Os08g0158900 5.7 5.6
 5.8
 6.0
 3.4
 3.0
 3.3
 2.0
 2.6
4 LOC4331249 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 4331249 Os02g0831200 5.7 4.7
 6.7
 6.4
 4.3
 2.6
 4.6
 2.5
 4.1
5 LOC4326553 dual-specificity RNA methyltransferase RlmN 4326553 Os01g0640800 5.6 5.4
 5.7
 3.2
 2.4
 1.0
 4.4
 3.0
 2.7
6 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 5.5 6.5
 4.5
 5.3
 3.7
 3.0
 4.8
 3.8
 2.3
7 LOC4331225 uncharacterized LOC4331225 4331225 Os02g0827600 5.5 6.8
 4.1
 4.5
 3.6
1.7
 2.4
2.2
 1.4
 4.1
 2.7
8 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 5.5 7.5
 3.4
 9.6
 6.3
4.9
 6.5
5.3
 3.3
 4.6
 4.3
9 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 5.4 6.6
 4.2
 3.7
 4.2
4.0
 5.4
4.0
 5.2
 3.5
2.0
 4.1
2.9
10 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 5.4 4.8
 6.1
 4.1
 3.0
2.9
 3.7
2.6
 4.8
 2.0
-0.6
 2.5
11 LOC4327084 pentatricopeptide repeat-containing protein DOT4, chloroplastic 4327084 Os01g0205200 5.4 4.8
 5.9
 3.1
 3.9
0.2
 4.1
0.8

2.6
12 LOC4345875 uncharacterized LOC4345875 4345875 Os08g0484800 5.4 4.0
 6.7
 2.1
 1.9
1.2
 1.4
1.4
 0.6
 1.0
0.9
 1.8
13 LOC4338877 DAR GTPase 3, chloroplastic 4338877 Os05g0430400 5.3 7.0
 3.6
 9.9
 2.7
0.1
 3.2
0.7
 4.2
 3.4
 2.3
14 LOC4334445 probable GTP-binding protein OBGC2 4334445 OSNPB_030799700 5.3 4.5
 6.0
4.4
3.2
 3.9
3.1
 2.8
 3.8
 4.5
15 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 5.2 5.8
 4.6
 5.0
 6.3
4.7
 7.2
3.3
 2.6
 2.8
 4.0
16 LOC4352408 phenylalanine--tRNA ligase, chloroplastic/mitochondrial 4352408 Os12g0533700 5.2 6.7
 3.7
 3.2
 2.1
1.9
 3.8
1.8
 5.8
 3.9
 4.4
17 LOC4331470 uncharacterized LOC4331470 4331470 Os03g0126300 5.2 5.9
 4.5
 2.1
 0.8
 1.2
 1.6
 2.2
 1.8
18 LOC4325168 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 4325168 Os01g0271400 5.1 4.8
 5.4
 2.7
 3.4
2.7
 3.6
2.5
 4.2
 3.8
 2.4
19 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 5.1 5.5
 4.7
 4.2
4.1
 5.0
3.9
 4.3
3.2
 4.8
 6.2
4.1
 4.0
3.8
20 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 5.1 5.9
 4.2
 4.4
 4.8
2.2
 3.8
2.1
 2.5
 4.2
2.8
 3.2
21 LOC4324255 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 4324255 Os01g0705300 5.0 5.2
 4.9
 4.2
 3.3
3.2
 3.2
2.8
 3.8
 1.7
 2.3
22 LOC4324908 rhodanese-like domain-containing protein 4A, chloroplastic 4324908 Os01g0889800 5.0 5.9
 4.1
 3.6
 3.9
2.9
 3.4
2.9
 3.0
 4.4
 2.6
23 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 4.9 5.2
 4.6
 7.7
 5.9
5.8
 7.7
5.2
 4.5
 3.3
 6.0
24 LOC4338780 uncharacterized protein Cbei_0202 4338780 Os05g0411200 4.9 4.5
 5.2
 6.1
 1.8
0.9
 1.9
1.0
 3.0
 3.8
 2.2
25 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 4.9 5.3
 4.4
 3.0
 3.6
1.0
 3.5
1.1
1.4
 3.7
26 LOC4324676 uncharacterized LOC4324676 4324676 Os01g0558800 4.9 4.6
 5.1
 6.5
 3.8
2.1
 4.1
2.6
 2.8
 2.9
 1.8
27 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 4.9 5.5
 4.2
 7.5
2.7
 8.7
6.0
 8.2
5.0
 2.3
 3.6
3.6
 5.9
3.5
28 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 4.8 4.3
 5.2
 9.2
 6.3
4.7
 6.7
3.4
 5.8
 4.1
 4.5
29 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 4.8 5.8
 3.7
 2.0
 2.4
1.9
 2.1
2.1
 2.2
 2.3
 1.8
30 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 4.7 4.6
 4.8
 11.5
 5.1
 6.3
 4.1
 4.5
 5.5
31 LOC4324505 aspartate--tRNA ligase, chloroplastic/mitochondrial 4324505 Os01g0153400 4.7 3.3
 6.1
 8.6
 6.7
1.9
 5.3
3.0
 4.3
 5.4
2.5
 2.8
2.2
32 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 4.7 4.5
 4.8
 2.8
 2.9
 3.1
 3.9
 3.4
 3.5
33 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 4.7 4.5
 4.9
 8.7
 4.0
3.9
 3.1
3.0
 3.5
 2.2
 3.8
34 LOC4325387 cell division protein FtsY homolog, chloroplastic 4325387 Os01g0958100 4.6 4.5
 4.8
 5.4
 1.0
 0.5
 5.0
 4.3
 2.9
35 LOC4349500 probable inactive shikimate kinase like 2, chloroplastic 4349500 Os10g0577700 4.6 5.0
 4.2
 5.5
 5.2
 4.7
 2.6
 2.0
 3.6
36 LOC4346941 DEAD-box ATP-dependent RNA helicase 22-like 4346941 OSNPB_090383400 4.6 2.7
 6.4
 9.8
 9.0
 7.7
 3.2
 3.8
 6.0
37 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 4.6 5.4
 3.7
 4.2
4.1
 5.0
3.9
 4.3
3.2
 4.8
 6.2
4.1
 4.0
3.8
38 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 4.5 6.4
 2.6
 3.4
 2.3
2.3
 3.0
2.1
 3.6
 1.9
1.2
 4.1
39 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 4.5 4.8
 4.3
 3.0
 5.4
4.5
 3.8
3.2
 5.7
 2.6
 1.4
40 LOC4336112 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4336112 Os04g0469400 4.5 5.3
 3.7
 2.5
 3.6
 2.9
 0.3
2.3
41 LOC4328094 pentatricopeptide repeat-containing protein At2g01860 4328094 Os02g0118000 4.5 4.9
 4.1
 1.4
 6.0
4.8
 6.7
4.3
 2.2
 3.4
 1.3
42 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 4.4 3.7
 5.1
 7.1
 6.1
 5.7
 3.2
 4.1
 4.6
43 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 4.4 5.7
 3.1
 6.8
 4.1
 4.2
 4.8
 5.1
 3.8
44 LOC4341770 fructose-1,6-bisphosphatase, chloroplastic 4341770 Os06g0664200 4.4 4.3
 4.5
 4.7
 3.6
1.5
 2.7
1.5
 0.6
 2.4
 3.2
45 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.4 5.2
 3.5
 3.9
 2.8
 1.5
 2.3
 3.6
 2.0
46 LOC4327755 uncharacterized protein At4g37920 4327755 Os01g0306800 4.3 5.3
 3.4
 6.7
 3.8
3.4
 4.5
3.6
 2.8
 3.5
 3.9
47 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 4.3 4.6
 4.0
 5.1
 3.0
2.9
 4.7
2.3
 5.7
 4.1
1.5
 2.8
48 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 4.3 4.7
 3.9
 4.3
 3.7
3.5
 3.5
3.0
 3.9
 1.7
 1.7
49 LOC4350683 GDT1-like protein 2, chloroplastic 4350683 OSNPB_110544500 4.3 6.7
 1.9
 1.2
 3.2
 3.4
 2.7
 2.3
1.3
 3.1
50 LOC4337526 50S ribosomal protein L28, chloroplastic 4337526 Os05g0101400 4.3 4.4
 4.2
 3.4
 1.0
 -0.1
 2.3
 0.6
 1.9
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