Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328130   protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic 
 osa-r.5   4328130   protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic 
 ath-u.4   ARC6   Chaperone DnaJ-domain superfamily protein 
 gma-u.4   100778956   protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic 
 gma-u.4   100790455   protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic 
 sly-u.4   101055525   Hop-interacting protein THI044 
 ppo-u.4   7493942   protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic 
 mtr-u.4   11417899   protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic 

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Top 50 coexpressed genes to 4328130 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1230   Biosynthesis of amino acids  4 220 2.93
 osa3013   Nucleocytoplasmic transport  3 109 2.80
 osa300   Lysine biosynthesis  2 13 3.48
 osa3030   DNA replication  2 40 2.49
 osa3008   Ribosome biogenesis in eukaryotes  2 90 -

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osa:LOC4328130 (protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328130
osa-r.5
for
4328130
ath-u.4
for
ARC6
gma-u.4
for
100778956
gma-u.4
for
100790455
sly-u.4
for
101055525
ppo-u.4
for
7493942
mtr-u.4
for
11417899
1 LOC4337316 cell division protein FtsZ homolog 1, chloroplastic 4337316 Os04g0665400 4.8 6.8
 6.9
 3.7
3.6
 4.5
4.1
 3.8
0.4
 5.4
 1.1
0.8
2 LOC4345328 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic 4345328 Os08g0342400 4.7 6.8
 6.7
3.5
 3.3
2.9
 4.9
4.0
 2.9
0.7
 2.0
-0.7
 2.7
0.3
3 LOC4336347 CLIP-associated protein 4336347 Os04g0507500 4.1 5.6
 1.2
 1.5
0.8
 1.8
1.7
 0.8
-0.0
 1.0
 1.1
1.1
4 LOC4352263 cell division topological specificity factor homolog, chloroplastic 4352263 Os12g0498400 4.0 5.9
 2.3
 3.1
1.5
 4.1
3.1
 2.5
 3.1
2.7
 3.7
5 LOC4332389 protein TOC75, chloroplastic-like 4332389 OSNPB_030271200 3.8 5.2
 5.7
 5.5
4.9
 4.2
3.8
 6.0
 5.1
3.6
 5.0
0.4
6 LOC9269589 uncharacterized LOC9269589 9269589 Os10g0154600 3.7 4.7
 1.5
 2.1
 2.4
 2.2
 1.4
 2.4
7 LOC4331593 protein PIR 4331593 Os03g0143851 3.6 4.9
 2.8
 2.9
2.8
 2.8
2.7
 1.2
 1.1
0.4
 0.5
8 LOC107276144 uncharacterized LOC107276144 107276144 Os03g0412900 3.5 5.1





9 wsl8 white stripe leaf8 4338875 Os05g0430200 3.4 4.6
 5.9
 5.2
3.4
 4.7
3.0
 4.4
 3.3
1.9
 3.8
10 LOC4330491 ATP-dependent DNA helicase homolog RECG, chloroplastic 4330491 Os02g0710800 3.4 4.8
 3.9
 0.7
 2.5
 2.8
 1.7
 3.0
1.6
11 LOC4351665 dynamin-like protein ARC5 4351665 3.3 4.3
 1.9
 3.9
 2.7
 0.9
 4.1
 0.5
12 LOC4336329 2,3-dimethylmalate lyase 4336329 Os04g0504600 3.3 4.8
 2.7
 3.6
2.2
 3.2
3.2
 4.1
 1.5
 1.6
13 LOC4342564 pyruvate kinase isozyme A, chloroplastic 4342564 Os07g0181000 3.3 4.7
 2.1
 3.0
2.8
 4.3
3.7
 2.7
 1.8
1.5
 1.4
14 LOC4337150 DNA polymerase I A, chloroplastic-like 4337150 Os04g0637400 3.2 4.1
 5.1
3.4
 2.8
2.7
 4.2
2.8
 2.6
 4.5
1.8
 5.4
2.1
15 LOC4329575 F-box/FBD/LRR-repeat protein At1g13570 4329575 Os02g0537200 3.2 4.4
 -1.7
 1.5
0.1
 0.6
0.5
 0.9
0.6
 1.8
0.3
 1.5
1.3
16 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 3.2 4.1
 3.1
 3.8
3.0
 5.2
4.0
 2.5
 5.1
 4.5
17 LOC4343805 pentatricopeptide repeat-containing protein At4g21705, mitochondrial 4343805 Os07g0598500 3.2 4.4
 1.3
 1.8
-0.8
 0.6
-0.9
 2.3
0.8
 1.2
-0.6
 1.6
0.9
18 LOC4345893 heat shock protein 90-5, chloroplastic 4345893 Os08g0487800 3.1 4.1
 3.4
 4.0
3.8
 2.0
1.8
 2.3
 3.9
2.6
 2.3
19 LOC4340770 protein MICROTUBULE BINDING PROTEIN 2C 4340770 Os06g0284800 3.1 4.1
 -0.7
 -0.5
-1.0
 -0.7
-1.1
 -0.1
 0.4
 0.6
20 LOC4347873 nuclear pore complex protein GP210 4347873 Os09g0565500 3.1 3.6
 4.7
 1.2
 1.7
 2.8
 1.4
 1.9
21 LOC4324438 protein argonaute 4A-like 4324438 OSNPB_010275600 3.1 4.1
 3.4
1.9
 3.1
2.0
 3.1
2.0
 2.0
2.0
 1.6
1.4
 3.3
3.0
22 LOC4347814 protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 4347814 Os09g0555600 3.1 4.1
 3.1
 2.2
 3.1
 2.3
 0.9
 3.1
23 LOC4331367 uncharacterized LOC4331367 4331367 Os03g0111800 3.0 4.0
 1.3
 3.1
 0.7
 1.2
 1.7
 2.6
24 LOC4342511 uncharacterized LOC4342511 4342511 Os07g0170800 3.0 4.3


-0.5
 -0.8
-1.1
25 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 3.0 3.9
 3.0
 4.3
 2.6
 1.6
 3.8
 1.7
26 LOC4344498 squamous cell carcinoma antigen recognized by T-cells 3 4344498 Os08g0113200 3.0 3.6
 3.8
 1.3
1.2
 1.2
0.4
 -0.3
 2.0
 2.5
27 LOC4352003 coilin 4352003 Os12g0288801 3.0 3.7
 2.7
 3.9
2.1
 2.0
1.5
 1.6
0.6
 1.9
1.0
 2.2
28 LOC4343808 pentatricopeptide repeat-containing protein At1g26460, mitochondrial 4343808 Os07g0599000 2.9 4.1
 3.9
 1.9
1.1
 1.3
0.8
 2.5
 1.5
 1.9
29 LOC4325393 DNA mismatch repair protein MLH1 4325393 Os01g0958900 2.9 4.2
 2.0
 0.8
 1.3
 0.8
 1.2
 2.4
30 LOC4346596 enoyl-[acyl-carrier-protein] reductase [NADH] 2, chloroplastic-like 4346596 OSNPB_090277800 2.9 3.8
 0.7
 2.3
2.3
 4.4
2.8
 3.4
1.2
 1.9
0.5
 -0.0
-2.3
31 LOC4344710 nucleolar GTP-binding protein 1 4344710 Os08g0158900 2.9 3.9
 3.7
 2.0
 2.8
 0.7
 1.2
 2.0
32 LOC4350754 replication factor C subunit 1-like 4350754 OSNPB_110572100 2.9 3.7
 3.0
 2.4
1.2
 1.7
0.8
 1.1
 0.8
 1.7
33 LOC4334515 probable cellulose synthase A catalytic subunit 2 [UDP-forming] 4334515 OSNPB_030808100 2.9 4.5
 1.2
0.8
 1.2
0.6
 2.5
1.9
 1.5
0.5
 2.6
2.5
 3.4
0.5
34 LOC9267409 uncharacterized protein YnbB 9267409 Os04g0636300 2.9 3.9
1.4
0.9
 2.6
0.6
 2.0
 2.4
 0.4
35 LOC4334623 pentatricopeptide repeat-containing protein At1g74850, chloroplastic 4334623 Os03g0824100 2.9 3.9
 2.5
 4.7
3.1
 4.9
3.9
 2.2
 4.0
 3.5
36 LOC4336577 uncharacterized protein At3g06530 4336577 Os04g0548300 2.9 3.5
 2.5
 3.8
3.3
 2.2
1.3
 1.8
 0.4
 1.0
37 LOC4334454 uncharacterized LOC4334454 4334454 Os03g0800800 2.9 3.6
 2.5
 2.9
2.4
 2.1
0.6
 0.4
-0.3
 4.0
2.4
 3.9
38 LOC4326176 nuclear pore complex protein NUP85 4326176 Os01g0746200 2.9 3.6
 3.0
 2.1
 3.0
 -0.5
 2.1
 1.3
39 LOC4349010 probable receptor-like protein kinase At2g42960 4349010 Os10g0497600 2.8 3.7
 0.8
-0.4
 1.6
1.6
 2.0
1.8
 0.4
-0.7
 0.3
-0.4
 1.0
0.8
40 LOC4352388 uncharacterized LOC4352388 4352388 Os12g0528000 2.8 3.7
 4.0
 2.8
0.5
 1.0
0.3
 3.5
 3.8
2.8
 1.3
41 LOC4342673 rRNA biogenesis protein RRP5 4342673 Os07g0203300 2.8 3.4
 3.0
 3.6
3.4
 1.7
0.8
 2.0
 0.4
 1.6
42 LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic 4333613 Os03g0655700 2.8 3.8
 5.0
2.6
 3.2
3.1
 4.2
4.1
 3.2
 3.5
 0.1
43 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 2.8 3.4
 4.9
4.3
 2.8
2.2
 2.8
2.3
 3.2
1.4
 4.7
1.4
 3.2
2.7
44 LOC4348622 exocyst complex component SEC15A 4348622 Os10g0415200 2.8 3.6
 -0.7
 1.4
0.0
 1.2
0.2
 2.3
 0.0
-0.8
 1.1
45 LOC4338932 cell division protein FtsZ homolog 2-2, chloroplastic 4338932 Os05g0443800 2.8 3.5
 8.1
3.5
 5.0
2.9
 5.0
3.6
 4.8
3.6
 5.6
4.6
 2.7
1.3
46 LOC4330083 DEAD-box ATP-dependent RNA helicase 47A-like 4330083 OSNPB_020636300 2.8 3.8
 5.1
 3.1
2.7
 3.1
2.5
 4.2
 1.2
 2.9
47 LOC4347822 uncharacterized LOC4347822 4347822 Os09g0556700 2.7 3.4
1.7
0.1
 1.0
0.7
1.7
 3.2
1.7
48 LOC4329234 probable diaminopimelate decarboxylase, chloroplastic 4329234 OSNPB_020440000 2.7 3.7
 5.5
5.4
 3.2
1.2
 3.0
1.0
 3.0
 1.3
0.0
 1.8
49 LOC4349921 protein TPLATE 4349921 Os11g0175900 2.7 4.4
 1.1
 0.6
-0.7
 1.1
0.2
 1.2
 0.8
 -0.1
50 LOC4344938 GTP-binding protein ERG 4344938 Os08g0207600






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