Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328182   protein LOW PSII ACCUMULATION 3, chloroplastic 
 osa-r.5   4328182   protein LOW PSII ACCUMULATION 3, chloroplastic 
 osa-m.8   4328182   protein LOW PSII ACCUMULATION 3, chloroplastic 
 ath-u.4   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 gma-u.4   100805878   protein LOW PSII ACCUMULATION 3, chloroplastic 
 sly-u.4   101261055   protein LOW PSII ACCUMULATION 3, chloroplastic 
 ppo-u.4   7491892   protein LOW PSII ACCUMULATION 3, chloroplastic 
 mtr-u.4   11411101   protein LOW PSII ACCUMULATION 3, chloroplastic 

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Top 50 coexpressed genes to 4328182 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  3 35 4.26
 osa730   Thiamine metabolism  1 22 -
 osa30   Pentose phosphate pathway  1 57 -
 osa40   Pentose and glucuronate interconversions  1 73 -
 osa480   Glutathione metabolism  1 114 -

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osa:LOC4328182 (protein LOW PSII ACCUMULATION 3, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328182
osa-r.5
for
4328182
osa-m.8
for
4328182
ath-u.4
for
AT5G48790
gma-u.4
for
100805878
sly-u.4
for
101261055
ppo-u.4
for
7491892
mtr-u.4
for
11411101
1 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 8.8 5.5
 12.0
 1.5
 1.7
 1.5
 0.7
 1.4
2 LOC4347659 rhodanese-like domain-containing protein 14, chloroplastic 4347659 Os09g0530000 6.5 5.5
 7.5
 2.5
 1.9
-0.9
 1.0
 1.4
0.3
3 LOC9268627 carboxymethylenebutenolidase homolog 9268627 Os05g0429500 6.3 4.5
 8.1
 2.6
 1.3
 0.8
 0.6
 3.4
4 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 6.1 6.4
 5.8
 -1.0
 0.6
-1.1
 0.5
 1.5
1.4
 1.8
5 LOC4333802 uncharacterized LOC4333802 4333802 Os03g0695500 5.8 6.9
 4.6
 2.6
 0.9
 1.9
 0.3
 2.4
6 LOC4341038 phosphomannomutase/phosphoglucomutase 4341038 Os06g0476300 5.5 3.2
 7.9
 0.4
 0.0
 1.0
 0.1
 0.6
7 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 5.2 4.5
 6.0
 1.5
 2.0
0.4
 -0.5
 1.5
-0.0
 0.9
8 LOC4325329 protein GIGANTEA-like 4325329 OSNPB_010182600 5.2 4.7
 5.7
 -1.4
 0.7
-0.3
 1.0
0.3
 -0.8
-1.3
9 LOC4333103 glucose-6-phosphate 1-dehydrogenase, chloroplastic 4333103 Os03g0412800 5.2 4.0
 6.3
 1.5
0.1
 0.8
0.8
 1.5
-0.5
 2.3
1.4
 1.2
0.3
10 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 5.1 6.0
 4.2
 1.7
 3.3
 2.7
 1.0
 1.5
11 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 5.0 5.1
 4.8
 3.5
 1.3
 2.2
1.0
 0.1
 2.6
12 LOC4343652 chaperonin-like RbcX protein 2, chloroplastic 4343652 Os07g0569600 5.0 4.4
 5.6
 1.7
 2.1
0.7
 3.4
3.1
 1.7
0.7
 0.9
13 LOC4326612 probable aldo-keto reductase 1 4326612 Os01g0618100 4.9 4.6
 5.2
3.2
2.1
 1.2
0.5
 0.9
-0.6
 0.5
0.1
14 LOC4326994 CRS2-associated factor 2, chloroplastic 4326994 OSNPB_010323300 4.9 4.2
 5.6
 0.9
 0.1
 0.4
 1.0
 3.5
15 LOC4332686 uncharacterized LOC4332686 4332686 Os03g0322600 4.8 1.9
 7.7
 3.4
 3.0
2.1
 2.0
 0.6
 2.2
16 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 4.7 5.2
 4.3
 0.8
 2.4
0.8
 0.8
 -0.7
 0.6
17 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.6 4.5
 4.7
 -0.7
 0.9
0.8
 0.9
 0.6
-0.1
 1.7
18 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 4.6 4.0
 5.3
 0.1
 2.5
-0.5
 3.2
 0.2
 2.0
19 LOC4325154 aspartic proteinase-like 4325154 Os01g0290000 4.6 4.9
 4.3
 0.1
-0.4
 0.5
0.2
 1.0
0.7
 2.1
0.3
 1.2
-0.1
20 LOC4330635 APO protein 2, chloroplastic 4330635 Os02g0732900 4.6 3.1
 6.0
 2.2
 2.0
 0.5
 0.9
0.9
 2.0
1.1
21 LOC4329356 probable sodium/metabolite cotransporter BASS3, chloroplastic 4329356 OSNPB_020475400 4.5 4.9
 4.2
 0.3
 -0.8
 1.2
 -0.5
 2.1
22 LOC4327544 psbP domain-containing protein 6, chloroplastic 4327544 Os01g0805300 4.5 4.0
 5.0
 4.9
 2.2
1.0
 2.6
 1.2
 3.1
23 LOC4345375 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 4345375 OSNPB_080360100 4.5 4.2
 4.8
 -0.6
 2.0
 1.0
 0.5
0.5
 0.8
24 LOC4327790 probable 2-carboxy-D-arabinitol-1-phosphatase 4327790 Os01g0237100 4.5 3.8
 5.1
4.4
3.5
 3.2
 2.1
 1.4
25 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 4.4 4.1
 4.7
 0.0
 0.8
0.2
 1.0
 0.9
0.8
 2.5
26 LOC4333282 pentatricopeptide repeat-containing protein At1g09900 4333282 Os03g0569800 4.3 3.7
 4.9




27 LOC4342509 uncharacterized LOC4342509 4342509 Os07g0170200 4.3 3.8
 4.7
 1.2
 1.3
1.1
1.8
0.6
 1.9
28 LOC9269015 uncharacterized LOC9269015 9269015 Os09g0448900 4.1 3.8
 4.4
 4.0
 3.4
 2.3
 -0.4
 0.1
29 LOC4349671 uncharacterized LOC4349671 4349671 Os11g0130200 4.0 2.8
 5.2
 1.6
 -0.7
 1.8
 1.4
 1.9
30 LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like 4345779 Os08g0463900 4.0 3.7
 4.3
 5.4
 0.8
 3.2
 1.4
 0.7
31 LOC4341916 putative disease resistance protein RGA3 4341916 3.9 3.2
 4.6
1.7
1.7
 0.5
 0.4
-0.4
 1.5
0.9
32 LOC4333719 phosphomethylpyrimidine synthase, chloroplastic 4333719 Os03g0679700 3.9 5.8
 2.0
 1.7
 0.1
-1.4
 -0.0
 1.3
0.7
 1.7
33 LOC4345611 chaperonin-like RBCX protein 1, chloroplastic 4345611 Os08g0425200 3.9 3.8
 4.0
 1.4
 1.1
0.3
 1.6
 2.0
 1.9
34 LOC112936032 pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like 112936032 3.9 5.6
-1.1
 0.6
 1.2
 1.1
-0.2
 2.1
35 LOC4326442 light-regulated protein, chloroplastic-like 4326442 OSNPB_010102900 3.8 3.8
 3.8
 -0.2
 1.9
0.3
 -0.3
 1.1
 1.9
36 LOC4344399 two-component response regulator-like PRR37 4344399 OSNPB_070695100 3.8 4.5
 3.1
 0.1
-0.6
 2.9
2.8
 -0.1
 -0.3
-1.4
 0.6
0.0
37 LOC9267718 probable LRR receptor-like serine/threonine-protein kinase At1g53440 9267718 Os02g0232500 3.8 4.1
 3.5
 0.6
-0.0
 1.2
0.8
 -0.7
 -0.6
-1.0
 0.0
-0.7
38 LOC9272054 probable LRR receptor-like serine/threonine-protein kinase At1g06840 9272054 Os05g0481100 3.8 3.2
 4.4
 -0.4
-0.6
 0.6
0.2
 1.4
1.2
 0.8
0.4
 0.4
-0.1
39 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 3.8 5.0
 2.5
 1.4
 0.5
 2.5
1.6
40 LOC4344777 clp protease adapter protein ClpF, chloroplastic 4344777 Os08g0172200 3.7 4.3
 3.1
 3.3
 5.0
4.8
 2.3
 0.5
 3.1
41 LOC4327350 uncharacterized LOC4327350 4327350 Os01g0810200 3.7 3.1
 4.3
 0.0
 0.4
 0.3
 0.0
 0.3
42 LOC4338146 uncharacterized LOC4338146 4338146 3.7 2.8
 4.6




43 LOC4324367 epoxide hydrolase 1 4324367 Os01g0919700 3.7 2.9
 4.5
 2.6
 5.1
 2.7
 2.8
 1.5
44 LOC9267504 D-ribulose kinase 9267504 Os07g0409200 3.7 4.9
 2.5
 2.6
 4.3
 4.2
 2.2
 3.5
45 LOC4332464 two-component response regulator-like PRR73 4332464 OSNPB_030284100 3.7 3.9
 3.5
 0.1
-0.6
 2.9
2.8
 -0.1
 -0.3
-1.4
 0.6
0.0
46 LOC4352612 probable inactive purple acid phosphatase 1 4352612 Os12g0576600 3.6 4.8
 2.5
 0.5
-0.1
 1.4
0.7
 0.8
0.7
 1.2
0.4
 0.7
0.5
47 LOC4329969 F-box/LRR-repeat protein 14 4329969 Os02g0613200 3.6 3.6
 3.7
 -0.8
 2.5
1.4
 0.3
-0.4
 0.3
 0.6
-0.2
48 LOC4345044 RNA polymerase sigma factor sigF, chloroplastic 4345044 Os08g0242800 3.6 3.9
 3.4
 1.1
 2.0
1.6
 1.3
 0.4
 3.3
2.0
49 PHT4;1 probable anion transporter 1, chloroplastic 4326905 OSNPB_010279700 3.6 2.2
 5.0
 1.9
0.5
 3.2
0.8
 2.6
2.3
 1.7
1.4
 1.3
1.3
50 LOC4351854 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4351854 Os12g0236900 3.6 2.8
 4.4
 1.7
 1.0
0.9
 1.8
 1.2
 3.2
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