Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328187   upstream activation factor subunit spp27 
 osa-r.5   4328187   upstream activation factor subunit spp27 
 osa-m.8   4328187   upstream activation factor subunit spp27 
 osa-u.4   4334190   upstream activation factor subunit UAF30 
 osa-u.4   4352303   upstream activation factor subunit spp27 
 ath-u.4   AT3G03590   SWIB/MDM2 domain superfamily protein 
 ath-u.4   AT1G31760   SWIB/MDM2 domain superfamily protein 
 ath-u.4   AT2G35605   SWIB/MDM2 domain superfamily protein 
 gma-u.4   100779127   protein TRI1 
 gma-u.4   100795307   upstream activation factor subunit UAF30 
 gma-u.4   100306198   uncharacterized LOC100306198 
 sly-u.4   101253218   upstream activation factor subunit UAF30 
 sly-u.4   101245505   SWIB_MDM2 domain protein 
 sly-u.4   101249284   upstream activation factor subunit UAF30 
 ppo-u.4   7469615   uncharacterized LOC7469615 
 ppo-u.4   7482403   upstream activation factor subunit spp27 
 ppo-u.4   7465059   zinc finger CCCH domain-containing protein 44 
 mtr-u.4   11407385   upstream activation factor subunit UAF30 
 mtr-u.4   11437910   upstream activation factor subunit UAF30 

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Top 50 coexpressed genes to 4328187 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  7 336 5.20
 osa3008   Ribosome biogenesis in eukaryotes  4 86 4.49
 osa240   Pyrimidine metabolism  2 62 2.12
 osa3040   Spliceosome  2 196 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4328187 (upstream activation factor subunit spp27) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328187
osa-r.5
for
4328187
osa-m.8
for
4328187
osa-u.4
for
4334190
osa-u.4
for
4352303
ath-u.4
for
AT3G03590
ath-u.4
for
AT1G31760
ath-u.4
for
AT2G35605
gma-u.4
for
100779127
gma-u.4
for
100795307
gma-u.4
for
100306198
sly-u.4
for
101253218
sly-u.4
for
101245505
sly-u.4
for
101249284
ppo-u.4
for
7469615
ppo-u.4
for
7482403
ppo-u.4
for
7465059
mtr-u.4
for
11407385
mtr-u.4
for
11437910
1 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 9.3 10.0
 8.6
 2.0
-0.3
 0.9
-0.0
 -1.4
 0.0
 3.2
 1.3
-0.7
 2.4
-0.5
 0.7
0.5
 0.5
 1.1
 1.7
 3.0
2.1
 1.1
0.8
 2.6
2.2
 4.1
2.6
 1.8
0.7
2 LOC4336241 ribosome-recycling factor 4336241 Os04g0490400 8.3 6.2
 10.4
 2.1
 -0.6
 -0.4
 0.5
 2.9
 2.6
 5.2
 -0.0
 5.5
 0.7
 1.0
 2.3
 2.6
 1.1
 2.6
 1.7
3 LOC4340741 H/ACA ribonucleoprotein complex subunit 2-like protein 4340741 Os06g0274200 8.0 7.1
 9.0
 2.5
-0.0
 1.0
1.0
 -0.4
 2.8
 6.2
 6.7
5.3
 6.9
5.6
 1.2
0.7
 6.1
 2.2
 6.4
 3.5
 4.0
 3.1
 7.0
 0.5
4 LOC4325084 DNA repair RAD52-like protein 1, mitochondrial 4325084 7.9 7.1
 8.7
 1.7
 0.8
 1.8
 1.4
 3.0
 2.9
 2.1
 1.3
 2.3
 1.4
 1.7
 0.3
 2.3
 -0.1
 3.1
 1.2
5 LOC4340089 protein arginine N-methyltransferase PRMT10-like 4340089 OSNPB_060142800 7.8 7.0
 8.6
 2.0
 -0.1
 -1.6
 3.1
 1.8
 4.8
3.5
 4.2
3.0
 0.6
0.0
 1.5
 3.8
 2.3
 2.7
 3.5
 2.5
 4.4
 1.5
6 LOC4325041 DNA repair protein recA homolog 3, mitochondrial 4325041 Os01g0901200 7.8 6.2
 9.4
 2.6
-1.1
 1.1
0.8
 0.3
 2.4
 1.5
 1.9
1.0
 3.4
3.3
 1.0
0.5
 6.4
 0.7
 3.2
 0.5
-0.4
 2.2
0.1
 0.9
0.2
 3.6
1.9
 2.1
1.0
7 LOC4325458 uncharacterized protein At2g39795, mitochondrial 4325458 Os01g0143300 7.8 6.8
 8.7
 3.0
 -0.6
 0.5
0.1
 3.7
2.9
 5.4
4.5
 3.7
2.9
 7.1
7.0
 0.9
0.7
 7.6
 1.3
 4.7
 2.5
2.0
 3.5
3.1
 2.8
1.6
 5.9
5.7
 1.2
1.2
8 LOC4345238 50S ribosomal protein L15 4345238 Os08g0310100 7.7 6.5
 8.9
 2.0
 -0.1
 0.1
 1.5
 3.9
 2.6
1.1
 4.3
2.2
 1.7
1.5
 0.9
 1.3
 5.8
 3.7
2.9
 2.9
2.2
 3.1
2.0
 2.9
2.3
 2.4
2.0
9 LOC4340910 uncharacterized protein At2g39795, mitochondrial 4340910 Os06g0326500 7.5 6.1
 8.9
 2.7
 0.5













10 LOC4346843 probable protein arginine N-methyltransferase 1 4346843 OSNPB_090359800 7.5 6.2
 8.7
 1.0
 -0.2
 -0.5
-1.1
 3.1
1.6
 5.1
2.7
 5.3
4.4
 5.0
3.9
 1.8
1.5
 4.1
3.5
 3.1
2.5
 4.0
3.6
 1.3
0.9
 1.8
1.3
 1.7
1.2
 5.4
 1.6
11 LOC4332493 uncharacterized LOC4332493 4332493 Os03g0288800 7.5 7.8
 7.1
 2.5
 0.3
 0.9
 2.8
 0.2
 1.2
 3.8
 0.8
 1.9
 1.4
 2.8
 1.4
 1.1
 0.7
 5.7
 1.3
12 LOC4330356 UPF0160 protein C694.04c 4330356 Os02g0686600 7.4 6.4
 8.3
 2.8
 0.1
 -0.2
-1.7
 3.0
1.1
 3.2
2.3
 2.8
2.7
 4.6
4.4
 0.7
0.6
 4.4
 1.5
 4.2
 2.7
 5.9
 3.4
 4.2
 0.5
13 LOC4333677 acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like 4333677 OSNPB_030668900 7.2 6.0
 8.3
 3.7
 0.9













14 LOC4348736 translin 4348736 Os10g0443200 7.1 5.4
 8.8
 2.1
 1.5
 2.1
 2.2
 4.0
 2.8
 5.0
 1.0
 3.4
 3.3
 4.6
 2.7
 3.4
 2.2
 6.3
 1.7
15 LOC4338508 importin subunit beta-1 4338508 Os05g0353400 7.0 5.9
 8.1
 1.9
-0.5
 -0.5
-1.0
 0.3
-0.6
 1.7
1.0
 3.4
3.2


2.8
 3.4
 2.2
 2.1
1.4
 3.7
2.7
 1.5
1.5

16 LOC4345369 Uncharacterized protein Os08g0359500 4345369 OSNPB_080359500 6.9 6.1
 7.6
 1.5
-0.2
 1.1
-0.5
 -0.6
 0.7
 2.6
 3.7
3.5
 5.7
5.3
 1.6
1.6
 4.2
1.2
 0.6
0.6
 1.3
1.1
 0.9
-0.1
 4.8
2.8
 0.3
-0.4
 4.3
3.6
 2.9
1.5
17 LOC4328158 small nuclear ribonucleoprotein E 4328158 Os02g0126700 6.7 4.9
 8.5
 1.9
1.2
 1.0
0.8
 0.7
0.6
 1.7
1.6
 5.9
2.8
 3.4
2.8
 3.5
3.5
 2.0
1.7
 5.2
4.2
 1.3
1.2
 4.1
2.8
 2.3
1.5
 3.6
2.3
 1.6
0.2
 7.7
5.9
 1.0
0.7
18 LOC4348184 chloride conductance regulatory protein ICln 4348184 Os10g0170000 6.7 5.1
 8.4
 1.7
1.6
 1.7
1.0
 0.8
 3.5
 2.9
 2.9
2.9
 3.8
3.8
 1.9
0.5
 5.0
 1.8
 5.2
 1.9
1.4
 4.3
3.5
 1.2
0.9
 6.4
 3.1
19 LOC4350355 exosome complex component RRP43 4350355 Os11g0311300 6.6 4.5
 8.7
 1.9
 0.0
 -0.2
 1.9
 2.8
 2.1
1.4
 3.1
1.2
 0.7
0.3
 2.3
 0.4
 1.5
 1.0
-0.4
 4.1
1.1
 0.4
-0.8
 2.9
 1.5
20 LOC4352583 mitochondrial import inner membrane translocase subunit Tim9-like 4352583 OSNPB_120571200 6.6 6.3
 6.8
 2.3
 -0.2
 0.2
 3.5
 4.7
 3.7
3.4
 4.9
4.6
 1.0
1.0
 5.8
 1.4
 4.9
 1.7
 3.2
 1.1
 4.8
2.8
 0.7
0.1
21 LOC4341684 ubiquitin-NEDD8-like protein RUB2 4341684 OSNPB_060650100 6.6 6.1
 7.0
 1.3
0.1
 0.1
-0.1
 1.1
0.3
 -0.7
-1.3
 1.8
1.0
 2.4
2.2
 3.5
3.0
 0.3
-0.2
 2.2
 -1.8
 2.4
 1.2
1.1
 3.3
1.6
 1.1
0.8
 4.1
2.0
 1.5
-0.3
22 LOC4336046 NAP1-related protein 1-like 4336046 OSNPB_040459700 6.5 5.5
 7.5
 1.4
 0.5













23 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 6.5 4.6
 8.4
 1.5
 1.8
 -0.7
 0.8
 1.2
 2.1
1.5
 3.5
3.1
 1.0
0.3
 5.7
 3.4
 4.5
 4.3
 0.3
 3.1
 3.1
-0.6
 3.6
0.4
24 LOC4332851 nucleolar protein 56 4332851 Os03g0352300 6.5 5.7
 7.2
 2.0
0.3
 -0.1
-0.6
 -1.5
-2.0
 4.4
2.2
 4.5
3.3
 2.6
2.2
 5.7
4.5
 1.4
1.0
 5.6
 1.7
 4.7
 2.0
1.9
 1.5
1.0
 2.3
1.4
 5.9
 0.0
25 LOC4338500 ERBB-3 BINDING PROTEIN 1 4338500 Os05g0350500 6.5 5.9
 7.1
 1.2
 -0.4
 -1.5
 0.8
 3.5
 2.5
2.3
 5.3
3.8
 2.3
2.2
 3.6
3.1
 1.1
0.4
 5.1
1.7
 1.4
1.0
 1.5
1.5
 0.6
0.1
 5.1
3.9
 1.2
0.9
26 LOC4343966 50S ribosomal protein L7/L12 4343966 Os07g0626100 6.4 5.9
 7.0
 0.7
 1.0
 1.0
 1.6
 1.4
 6.5
4.9
 3.8
2.8
 0.7
0.4
 3.3
 1.6
 4.5
 3.9
 2.5
 2.3
 3.4
 2.8
27 LOC4341246 50S ribosomal protein L1 4341246 Os06g0546400 6.4 5.4
 7.5
 1.1
 0.2
 -1.7
 0.1
 3.7
 1.9
1.4
 3.0
1.8
 0.5
0.3
 6.4
 1.4
 4.0
 2.5
 2.0
 1.4
 5.0
 0.6
28 LOC4339580 50S ribosomal protein L21, mitochondrial 4339580 Os05g0557800 6.4 5.5
 7.3
 1.6
 0.7
 -0.9
 3.0
 4.7
 3.5
3.5
 3.8
3.0
 1.5
1.1
 5.0
 0.8
 3.1
 1.4
 3.0
 0.8
 4.7
 -0.3
29 LOC4329646 RNA polymerase II transcriptional coactivator KIWI 4329646 Os02g0553600 6.4 5.6
 7.2
 0.8
 1.1
 2.9
1.6
 1.9
1.7
 4.2
0.6
 3.2
2.5
 4.5
3.8
 0.7
-0.0
 2.3
 1.8
 2.0
 0.0
 5.0
 0.4
 4.4
 2.2
30 LOC4344865 nucleolin 1-like 4344865 OSNPB_080192900 6.3 5.1
 7.4
 1.6
1.4
 -0.2
-0.5
 -1.4
-1.5
 3.1
1.9
 2.6
1.3
 1.0
1.0
 3.2
2.8
 1.3
1.2
 4.1
 2.5
 2.8
 2.2
1.5
 2.1
1.6
 1.7
1.1
 4.6
 2.3
31 LOC4332206 small nuclear ribonucleoprotein SmD3b 4332206 Os03g0240800 6.2 5.2
 7.2
 1.1
1.1
 1.4
0.7
 1.2
0.9
 4.2
3.0
 4.3
3.7
 5.4
4.1
 9.3
8.2
 2.6
2.2
 4.3
3.8
 3.2
2.5
 4.5
3.3
 2.5
1.9
 7.1
6.5
 3.5
3.2
 7.5
 3.3
32 LOC4343020 uncharacterized LOC4343020 4343020 Os07g0415200 6.1 5.9
 6.3
 2.0
 2.7
 0.3
 0.3
 2.4
 2.8
2.6
 4.5
3.3
 1.5
0.7
 2.4
 0.5
 3.0
 3.4
 3.4
 2.8
 3.6
 2.7
33 LOC4344581 glycine-rich protein 2 4344581 Os08g0129200 6.1 5.5
 6.8
 1.9
1.2
 0.1
-0.6
 1.4
0.7
 1.4
0.8
 1.9
0.8
 2.3
2.1
 4.8
3.5
 2.6
2.0
 1.9
0.7
 1.9
1.8
 1.8
0.8
 2.1
1.7
 3.5
3.4
 2.2
1.7
 2.0
 1.3
34 LOC4326564 single-stranded DNA-binding protein, mitochondrial 4326564 Os01g0642900 6.1 3.9
 8.2
 1.1
 0.7
 2.3
 1.9
 3.8
 2.6
 5.3
 1.0
 5.7
 1.7
 2.8
 1.9
 1.8
 2.1
 6.8
 1.8
35 LOC4327104 50S ribosomal protein L3-2, chloroplastic 4327104 Os01g0251100 6.1 6.0
 6.2
 1.5
 1.0
 -0.7
 3.4
 3.1
 3.7
2.8
 7.0
7.0
 0.2
-0.0
 1.9
 0.5
 2.1
 2.7
2.0
 2.6
2.2
 2.0
1.5
 4.8
3.3
 2.2
0.8
36 LOC4341310 T-complex protein 1 subunit epsilon 4341310 Os06g0562600 6.0 5.2
 6.7
 1.3
 -0.6
 -0.3
 0.8
 2.5
 3.3
2.1
 6.2
5.8
 1.3
0.8
 3.2
 1.7
 2.5
 2.2
2.2
 2.8
2.2
 1.8
0.9
 2.4
 0.3
37 LOC4339986 39S ribosomal protein L47, mitochondrial 4339986 Os06g0128500 6.0 6.2
 5.7
 2.2
 1.3
 2.3
 4.1
 2.5
 3.3
2.8
 5.4
4.9
 1.8
0.6
 1.7
 2.7
 5.0
 2.2
0.8
 4.5
0.6
 1.2
0.4
 5.1
 1.6
38 LOC4343835 ras GTPase-activating protein-binding protein 2 4343835 Os07g0603100 6.0 5.7
 6.3
 0.9
 -0.7













39 LOC4329832 ribosome biogenesis protein BRX1 homolog 2 4329832 Os02g0591800 5.9 4.8
 7.0
 2.2
 0.1
 -0.3
-0.9
 3.3
1.3
 3.5
3.3
 1.9
1.6
 2.3
1.1
 1.0
-0.1
 6.5
 2.4
 6.7
 1.8
1.3
 2.8
2.7
 1.8
1.8
 4.7
4.4
 2.6
0.8
40 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 5.9 4.1
 7.6
 4.7
 1.4
 -0.9
 1.6
 1.7
 0.4
 2.1
 2.4
 3.0
 4.0
 4.2
 2.9
 2.4
 2.2
 4.8
 2.4
41 LOC4339782 RGG repeats nuclear RNA binding protein A 4339782 Os05g0589600 5.9 6.2
 5.5
 2.3
1.0
 1.0
0.2
 0.9
-0.9
 0.3
0.3
 3.7
0.2
 4.2
2.5
 4.8
3.7
 2.8
2.0
 2.3
1.9
 0.8
0.7
 2.8
1.5
 2.8
2.5
 2.7
2.2
 2.8
2.2
 4.0
3.5
 2.3
1.2
42 LOC4339932 multiple organellar RNA editing factor 2, chloroplastic 4339932 Os06g0116600 5.8 5.3
 6.4
 1.9
1.9
 4.6
1.4
 1.3
-0.5
 1.9
1.8
 4.3
3.3
 1.8
0.9
 3.4
1.3
 1.7
1.5
 8.3
2.7
 4.3
1.5
 4.1
1.0
 4.0
3.8
 2.6
1.7
 3.5
2.1
 1.0
 3.5
43 LOC4332840 probable nucleolar protein 5-2 4332840 Os03g0350100 5.8 6.2
 5.5
 1.1
1.0
 0.7
0.1
 -1.5
-2.0
 2.4
1.6
 3.5
3.4
 2.8
2.6
 4.6
4.4
 1.4
1.2
 6.2
2.6
 1.4
1.1
 4.3
1.5
 2.0
1.5
 1.4
1.3
 2.1
1.8
 5.6
5.5
 0.8
0.5
44 LOC4334820 transmembrane protein 70, mitochondrial 4334820 Os03g0853800 5.8 5.9
 5.7
 1.5
 0.1
 0.9
 1.2
 4.5
 2.3
 5.9
 0.7
 6.8
 0.7
 1.9
 2.7
2.3
 2.5
2.2
 1.3
1.0
 2.4
 1.2
45 LOC4345370 30S ribosomal protein S17 4345370 Os08g0359600 5.7 5.0
 6.5
 1.2
 2.4
 0.1
 0.8
 5.3
 3.0
2.9
 3.7
3.0
 2.2
2.0
 2.9
 0.2
 2.7
 1.2
1.0
 3.6
2.4
 2.0
1.7
 4.2
3.4
 1.3
1.3
46 LOC4324671 40S ribosomal protein S24-1 4324671 Os01g0723200 5.7 5.8
 5.7
 1.8
1.1
 1.6
1.2
 -0.5
-0.9
 2.8
2.0
 3.2
2.0
 3.1
2.5
 6.2
5.5
 2.8
1.8
 3.4
3.2
 2.3
1.2
 3.8
3.8
 2.6
2.3
 3.5
3.4
 2.7
2.2
 5.3
 0.9
47 LOC4350782 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 4350782 Os11g0579800 5.7 6.3
 5.2
 3.2
 1.7
 0.3
 4.6
 3.6
 3.8
2.8
 6.1
5.3
 1.8
1.3
 3.6
 3.2
 5.7
 2.4
2.0
 3.0
1.7
 2.0
1.2
 6.1
 2.2
48 LOC4324258 mitochondrial import receptor subunit TOM40-1 4324258 Os01g0276200 5.7 5.3
 6.1
 2.4
1.0
 1.2
0.6
 -0.7
 2.0
 1.9
 3.8
2.6
 5.8
5.8
 0.9
0.1
 5.2
3.9
 2.6
1.4
 6.0
4.9
 2.5
1.9
 4.1
2.3
 2.1
1.9
 6.5
 0.6
49 LOC4334812 uncharacterized LOC4334812 4334812 Os03g0852500 5.7 5.4
 6.0
 1.4
 0.2
 0.8
 3.6
 6.7





2.1
 4.4
 0.9

50 LOC4326505 nascent polypeptide-associated complex subunit alpha-like protein 1 4326505 Os01g0938900

0.7
0.6
 2.8
-0.1
 0.5
0.3
 1.6
1.2
 2.9
1.9
 4.7
3.6
 6.1
6.0
 1.7
1.3
 4.1
1.7
 3.6
1.3
 4.2
3.4
 3.5
3.1
 3.9
3.7
 4.7
4.3
 5.8
4.3
 3.2
3.0
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