Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328498   HD domain-containing protein 2 
 osa-r.5   4328498   HD domain-containing protein 2 
 osa-m.8   4328498   HD domain-containing protein 2 
 osa-u.4   4326555   HD domain-containing protein 2 homolog 
 ath-u.4   AT2G23820   Metal-dependent phosphohydrolase 
 ath-u.4   AT1G26160   Metal-dependent phosphohydrolase 
 gma-u.4   100819398   5'-deoxynucleotidase HDDC2 
 gma-u.4   100798792   5'-deoxynucleotidase HDDC2 
 gma-u.4   100784513   5'-deoxynucleotidase hdd1 
 sly-u.4   101246425   HD domain-containing protein 2 
 sly-u.4   101257084   HD domain-containing protein 2 
 ppo-u.4   7465985   HD domain-containing protein 2 
 ppo-u.4   7485934   HD domain-containing protein 2 homolog 
 mtr-u.4   25494276   5'-deoxynucleotidase HDDC2 
 mtr-u.4   120578197   5'-deoxynucleotidase HDDC2-like 
 mtr-u.4   25480606   5'-deoxynucleotidase HDDC2 

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Top 50 coexpressed genes to 4328498 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa30   Pentose phosphate pathway  1 57 -
 osa20   Citrate cycle (TCA cycle)  1 60 -
 osa51   Fructose and mannose metabolism  1 64 -
 osa10   Glycolysis / Gluconeogenesis  2 143 -
 osa1200   Carbon metabolism  2 273 -

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osa:LOC4328498 (HD domain-containing protein 2) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328498
osa-r.5
for
4328498
osa-m.8
for
4328498
osa-u.4
for
4326555
ath-u.4
for
AT2G23820
ath-u.4
for
AT1G26160
gma-u.4
for
100819398
gma-u.4
for
100798792
gma-u.4
for
100784513
sly-u.4
for
101246425
sly-u.4
for
101257084
ppo-u.4
for
7465985
ppo-u.4
for
7485934
mtr-u.4
for
25494276
mtr-u.4
for
120578197
mtr-u.4
for
25480606
1 LOC4341063 protein BOLA4, chloroplastic/mitochondrial 4341063 Os06g0484600 6.8 5.9
 7.7
 1.3
 2.0
 4.0
 2.4
 0.3
 0.1
 1.5
 1.5
 4.6
 0.8
 0.4
 2.9
 1.1
2 LOC4352413 acyl carrier protein 1, chloroplastic 4352413 Os12g0534200 5.4 5.6
 5.1
 1.1
0.5
 1.7
0.7
 2.7
0.5
 1.7
1.5
 1.3
1.0
 1.0
0.8
 1.5
0.6
 0.0
-0.0
 1.5
0.6
 1.5
0.1
 -0.1
-0.1
 1.6
1.2
 0.6
-0.0
3 LOC4329578 2-Cys peroxiredoxin BAS1, chloroplastic-like 4329578 OSNPB_020537700 4.8 6.2
 3.4
 -0.7
 3.1
2.6
 0.8
-0.2
 1.4
1.1
 1.6
1.3
 0.0
-0.1
 2.3
0.9
 3.2
1.7
 4.7
3.2
 1.8
1.7
 -0.0
-0.5
 2.8
2.7
 1.7
1.1
4 LOC4329941 outer envelope pore protein 37, chloroplastic 4329941 Os02g0608900 4.8 4.3
 5.3
 0.5
-0.0
 3.9
 4.2
 1.7
 0.7
 0.3
 2.0
 2.3
 3.4
1.0
 2.2
0.3
 0.6
 0.9
 0.7
5 LOC4328090 peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic 4328090 Os02g0117600 4.7 4.6
 4.8
 -0.1
 0.8
 0.7
 -0.8
 -1.2
 -0.9
 0.6
 2.3
 2.2
 0.0
 1.0
 1.5
 0.9
6 LOC4338057 thioredoxin-like 2, chloroplastic 4338057 OSNPB_050200100 4.5 4.8
 4.3
 0.5
 2.3
1.3
 1.5
-0.3
 0.8
0.0
 1.2
0.6
 0.8
0.7
 0.5
0.4
 3.6
3.0
 2.9
0.5
 0.0
-0.3
 0.6
 2.9
 0.5
7 LOC9269420 monothiol glutaredoxin-S10-like 9269420 OSNPB_080565800 4.4 3.7
 5.2
 -0.2
 3.5
 2.8
 2.4
0.7
 1.9
1.4
 0.3
-0.0
 1.2
 6.9
 4.5
 0.7
 -0.1
 1.8
 0.8
8 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 4.4 4.1
 4.6
 -0.6
-1.0
 3.3
-0.1
 0.4
0.0
 2.1
1.0
 1.7
1.0
 0.3
0.0
 1.1
 3.1
 3.1
2.1
 2.4
1.8
 0.8
-0.2
 2.1
1.0
 0.4
-0.2
9 LOC4331719 glutathione reductase, chloroplastic 4331719 Os03g0163300 4.3 5.2
 3.4
 0.3
-0.4
 -1.1
 2.6
 1.7
1.1
 1.0
0.5
 0.3
0.1
 -0.4
 2.2
 3.0
 -1.4
 0.9
 0.6
 -0.8
10 LOC9266255 maf-like protein DDB_G0281937 9266255 Os11g0549655 4.1 3.7
 4.6
 0.7
0.6
 2.5
1.3
 2.0
1.0
 2.5
2.2
 1.8
1.7
 0.5
-0.1
 2.6
-0.9
 1.6
1.0
 1.8
 0.9
 1.1
1.1
 2.0
2.0
 2.1
-0.2
11 LOC4332158 GTP-binding protein At2g22870 4332158 Os03g0232500 4.1 2.7
 5.5
 -0.2
 2.0
 0.6
 1.3
0.9
 1.7
0.4
 0.4
-0.3
 0.6
 1.8
 3.5
 1.6
 0.0
 0.4
 -0.2
12 LOC4326401 probable dual-specificity RNA methyltransferase RlmN 4326401 Os01g0973400 4.1 4.0
 4.2
 -1.2
 1.1
 0.5
 1.3
0.5
 1.5
0.4
 1.7
1.2
 1.1
 1.3
 1.0
 0.5
 1.2
 1.5
 -0.8
13 LOC4328147 3-isopropylmalate dehydratase large subunit, chloroplastic 4328147 Os02g0125100 4.1 4.5
 3.7
 0.7
 -0.3
 -0.7
 2.2
0.4
 2.5
1.2
 2.8
0.9
 1.3
-0.9
 2.3
-1.9
 1.4
 2.0
 1.2
-0.5
 1.6
-1.3
 -0.1
-0.2
14 LOC4352397 myosin heavy chain, striated muscle 4352397 Os12g0529900 4.1 3.3
 4.9
 0.3
0.3











15 LOC4326551 tryptophan--tRNA ligase, chloroplastic/mitochondrial 4326551 Os01g0743400 4.1 4.7
 3.4
 -0.4
 2.5
 0.9
 0.7
0.3
 0.8
0.3
 0.3
-0.1
 1.0
 1.3
 1.3
 1.5
 1.8
 2.7
 -0.1
16 LOC4345551 uncharacterized methyltransferase At1g78140, chloroplastic 4345551 Os08g0411200 4.1 3.2
 4.9
 1.1
 1.3
 2.2
 0.5
 0.8
 0.9

2.0
 -0.6
 1.4
 2.3
 -0.3
17 LOC4352266 uncharacterized LOC4352266 4352266 Os12g0498800 4.0 3.4
 4.6
 2.6
 2.2
 1.0
 1.3
0.7
 2.1
0.0
 -0.3
-0.5
 4.5
 2.1
 2.4
 2.9
 1.2
0.6
 1.7
1.0
 1.1
0.9
18 LOC4334772 uncharacterized LOC4334772 4334772 4.0 3.9
 4.1












19 LOC4324427 protein Mpv17 4324427 Os01g0730800 4.0 3.8
 4.1
 0.6
 1.6
 1.7
 2.7
 1.5
 1.7
 2.3
 5.0
 2.3
 0.7
 0.3
 2.7
 1.3
20 LOC4352342 dicarboxylate transporter 1, chloroplastic 4352342 Os12g0515400 3.9 3.7
 4.2
 0.6
 0.3
 1.6
 1.7
1.6
 1.2
0.6
 1.9
1.9
 1.8
 1.4
 2.8
2.2
 2.1
0.0
 -0.8
 0.5
 1.8
21 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 3.9 3.2
 4.7
 0.2











22 LOC4349791 60S ribosomal protein L26-1 4349791 Os11g0151300 3.9 4.2
 3.6
 0.5
0.3
 -0.3
-0.3
 0.1
-0.5
 1.0
0.5
 0.7
0.4
 -0.2
-0.4
 0.8
-0.3
 -0.3
-0.9
 1.0
0.4
 1.9
1.6
 0.8
0.5
 1.6
1.4
 0.4
0.2
23 LOC4338414 rhodanese-like domain-containing protein 7 4338414 Os05g0323100 3.9 4.5
 3.3
 0.2
 1.6
 3.0
 1.8
 1.7
 -0.0
 -0.3
 0.6
 3.1
 1.4
 0.9
 0.8
 0.2
24 LOC4335424 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 4335424 Os04g0303900 3.9 4.8
 2.9
 -0.4
 1.7
 3.4
 1.6
1.6
 1.2
0.8
 0.2
-0.3
 1.8
 2.5
 2.1
 0.9
 -0.5
 1.9
 1.2
25 LOC4348576 uncharacterized oxidoreductase At4g09670 4348576 Os10g0403700 3.9 2.7
 5.0
 -0.1
 0.7
-0.3
 1.7
-0.5
 1.4
1.3
 2.8
0.1
 0.3
-0.1
 1.8
-0.5
 1.3
1.2
 0.6
0.5
 0.0
-0.5
 0.6
-0.0
 1.3
0.5
 1.0
0.7
26 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 3.8 3.2
 4.4
 -0.5
 3.1
 1.3
 3.6
2.7
 2.3
2.3
 1.1
0.8
 -0.3
 1.5
 2.9
 0.5
 0.9
 0.5
 -0.5
27 LOC4351854 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4351854 Os12g0236900 3.8 3.2
 4.3
 0.3
 1.6
 0.2
 1.6
0.6
 0.5
0.1
 1.2
0.3
 1.1
 2.8
 0.2
 0.0
 0.9
 1.8
 -0.7
28 LOC4350683 GDT1-like protein 2, chloroplastic 4350683 OSNPB_110544500 3.8 4.5
 3.1
 0.1
 3.2
 2.0
 1.2
 1.3
 0.7
 2.3
 2.8
 2.8
0.4
 2.5
1.8
 0.2
 2.5
 0.3
29 LOC4346297 putative low molecular weight protein-tyrosine-phosphatase slr0328 4346297 Os08g0557400 3.8 4.2
 3.3
 0.5
 4.3
 1.7
 1.4
0.2
 1.8
0.5
 0.4
-0.1
 1.4
 3.2
 2.7
2.3
 2.1
0.9
 0.9
 2.7
 2.1
30 LOC4345098 glutamyl-tRNA reductase-binding protein, chloroplastic 4345098 Os08g0254900 3.7 3.9
 3.6
 0.1
 3.8
 0.0
 -0.5
 0.9
 -1.5
 3.6
 2.2
 4.5
 3.1
 -0.5
 2.8
 1.8
31 LOC4332801 blue-light photoreceptor PHR2 4332801 Os03g0343400 3.7 4.6
 2.9
 -1.0
 2.2
 -1.4
 2.6
2.0
 2.6
1.8
 0.4
0.1
 0.5
 3.3
 2.8
1.4
 1.2
1.1
 -0.8
 1.7
 0.7
32 LOC4333582 7-methylguanosine phosphate-specific 5'-nucleotidase A 4333582 Os03g0648900 3.7 3.7
 3.8
 0.4
 1.5
 1.8
 1.5
 1.5
 1.4
 2.9
 1.2
 1.4
 2.6
 0.1
 2.1
 0.8
33 LOC4337466 nudix hydrolase 26, chloroplastic 4337466 Os04g0685800 3.7 3.8
 3.6
 -0.0
 2.0
0.8
 2.7
1.9
 2.5
1.9
 2.2
1.0
 0.3
0.1
 0.4
 1.9
 3.2
3.1
 2.3
2.2
 0.4
 2.9
 1.9
34 LOC4347244 RHOMBOID-like protein 10, chloroplastic 4347244 Os09g0454100 3.7 2.9
 4.5
 0.9
 1.7
 1.8
 1.3
 2.6
 -0.4
 0.2
 1.2
 0.5
 -1.6
 -0.1
 1.3
 0.2
35 LOC4333313 uncharacterized LOC4333313 4333313 Os03g0578200 3.7 4.3
 3.1
 -0.6
 2.7
 -0.1
 3.1
1.5
 3.0
1.4
 0.1
0.1
 1.7
 1.8
 1.9
 0.6
 -0.0
 2.7
 -0.5
36 LOC4336471 ferredoxin-thioredoxin reductase, variable chain 4336471 Os04g0528800 3.7 3.3
 4.1
 0.3
0.2
 1.9
1.0
 3.5
1.9
 0.8
0.3
 0.0
-0.5
 0.0
-0.5
 1.2
 4.2
 1.5
0.7
 -0.9
-1.3
 -0.2
 2.0
 1.1
37 LOC4341770 fructose-1,6-bisphosphatase, chloroplastic 4341770 Os06g0664200 3.7 4.0
 3.4
 -1.2
 1.6
 -1.8
 -0.5
-0.8
 0.0
-1.0
 -0.2
-0.4
 0.3
 0.8
 0.8
 -0.4
 0.5
 1.0
 -1.0
38 LOC4349151 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 4349151 Os10g0522500 3.7 4.1
 3.3
 -1.1
 3.8
 3.9
 1.6
 1.2
 1.0
 1.0
 1.9
 1.5
 0.2
 1.0
 2.1
 0.1
39 LOC4342588 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4342588 Os07g0185300 3.7 3.4
 4.0
 0.7
 1.8
1.1
 1.9
0.7
 2.0
1.2
 1.7
1.4
 -0.1
-0.9
 2.1
 2.6
 3.4
 0.2
 -0.6
 1.8
 2.0
40 LOC4351629 putative CCA tRNA nucleotidyltransferase 2 4351629 Os12g0171200 3.7 2.9
 4.4
 0.4
 2.2
 1.6
 1.3
0.2
 1.4
0.0
 2.1
0.5
 -0.1
-0.4
 0.4
0.2
 -0.1
 0.0
 0.9
0.7
 2.1
0.2
 0.6
-0.3
41 LOC4332354 OTU domain-containing protein At3g57810 4332354 Os03g0266000 3.7 2.5
 4.8
 1.5
 2.9
 1.9
 1.0
 1.1
 0.3
 0.1
 2.2
 2.4
 2.1
 0.9
 2.1
 0.5
42 LOC4326261 DNA gyrase subunit B, chloroplastic/mitochondrial-like 4326261 OSNPB_010268300 3.7 4.1
 3.2
 -0.2
 1.8
1.5
 0.3
-1.2
 3.5
3.1
 3.5
2.6
 1.4
1.0
 1.7
 1.9
 3.2
 0.2
 0.7
 1.8
 0.3
43 LOC4332255 peptidyl-tRNA hydrolase ICT1, mitochondrial 4332255 Os03g0249200 3.6 2.5
 4.8
 0.7
 4.0
 3.2
 4.1
3.5
 1.7
1.4
 3.4
2.7
 1.8
 2.5
 1.2
0.6
 1.7
0.5
 0.4
 1.4
 -0.6
44 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 3.6 3.6
 3.7
 -0.2
 2.6
 2.4
 1.7
 1.5
 0.4
 0.3
 2.9
 2.7
 1.1
 0.5
 2.5
 0.9
45 LOC4326980 dihydrolipoyl dehydrogenase 1, mitochondrial 4326980 Os01g0328700 3.6 3.0
 4.2
 1.5
0.0
 1.2
-0.2
 1.1
0.8
 1.2
0.3
 0.7
-0.8
 1.2
0.5
 1.6
0.2
 2.1
-0.1
 1.6
0.1
 0.1
-1.1
 -0.7
 1.1
 -0.3
46 LOC4349500 probable inactive shikimate kinase like 2, chloroplastic 4349500 Os10g0577700 3.5 3.0
 4.0
 -0.9
 2.2
 -1.3
 0.8
 1.6
 1.3
 0.4
 2.4
 2.6
 1.2
 0.7
 1.3
 -1.2
47 LOC4338670 sm-like protein LSM5 4338670 Os05g0389300 3.5 3.6
 3.5
 1.6
 0.4
 0.5
 1.7
 1.5
 0.2
 1.5
 -0.1
 0.2
 1.6
 0.9
 2.3
 0.7
48 LOC4350519 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 4350519 Os11g0482400 3.5 2.7
 4.4
 -0.7

1.3
0.7
 1.9
1.6
 0.4
0.1
 1.6
 1.8
 0.4
 0.0
 0.1
 0.8
 -1.1
49 LOC4347220 uncharacterized LOC4347220 4347220 Os09g0450200 3.5 3.2
 3.8
 1.2
 1.2
 2.9
 1.0
1.0
 1.7
1.3
 2.1
1.9
 0.4
 1.2
 1.2
 0.0
 0.4
 3.6
 1.7
50 LOC4352341 chloroplastic import inner membrane translocase subunit TIM22-2 4352341 Os12g0514900 3.5 4.2
 2.8
 0.7
0.5
 3.4
2.8
 1.8
0.2
 1.4
0.7
 0.6
0.4
 -0.3
-0.8
 0.3
 3.7
 2.9
1.5
 1.0
0.2
 1.4
 2.7
 0.7
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