Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328572   lycopene beta cyclase, chloroplastic 
 osa-r.5   4328572   lycopene beta cyclase, chloroplastic 
 ath-u.4   LYC   lycopene cyclase 
 gma-u.4   100810895   lycopene beta cyclase, chloroplastic 
 gma-u.4   100783830   lycopene beta cyclase, chloroplastic 
 sly-u.4   101267662   lycopene beta cyclase, chloroplastic 
 sly-u.4   LCY1   lycopene beta-cyclase 
 ppo-u.4   7458943   lycopene beta cyclase, chloroplastic/chromoplastic 
 ppo-u.4   112325979   lycopene beta cyclase, chloroplastic/chromoplastic 
 ppo-u.4   7496096   lycopene beta cyclase, chloroplastic/chromoplastic 
 mtr-u.4   11419142   lycopene beta cyclase, chloroplastic/chromoplastic 

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Top 50 coexpressed genes to 4328572 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa30   Pentose phosphate pathway  1 57 -
 osa53   Ascorbate and aldarate metabolism  1 64 -
 osa710   Carbon fixation in photosynthetic organisms  2 77 -
 osa1230   Biosynthesis of amino acids  2 234 -
 osa1200   Carbon metabolism  2 273 -

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osa:LOC4328572 (lycopene beta cyclase, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328572
osa-r.5
for
4328572
ath-u.4
for
LYC
gma-u.4
for
100810895
gma-u.4
for
100783830
sly-u.4
for
101267662
sly-u.4
for
LCY1
ppo-u.4
for
7458943
ppo-u.4
for
112325979
ppo-u.4
for
7496096
mtr-u.4
for
11419142
1 LOC4325645 protein PLASTID MOVEMENT IMPAIRED 2 4325645 Os01g0692300 3.6 4.7
 2.0
 2.1
0.7
 3.8
2.1
 1.3
 3.4
 0.0
 1.5
 0.5
 1.0
2 LOC4340581 probable glutathione S-transferase DHAR2, chloroplastic 4340581 Os06g0232600 3.5 4.9
 0.9
 2.4
1.7
 2.0
1.7
 0.8
 0.3
 1.0
 0.6
 0.8
 -0.4
3 LOC4325651 threonine synthase, chloroplastic 4325651 Os01g0693800 3.5 4.8
 1.1
0.9
 2.8
1.7
 1.2
0.3
 2.7
2.2
 2.9
1.1
 1.3
-1.0
 0.4
-0.8
 0.8
-1.0
 0.7
0.2
4 LOC4333316 membrane metalloprotease ARASP, chloroplastic 4333316 Os03g0579000 3.5 4.7
 5.5
5.5
 3.8
3.3
 2.3
1.8
 2.9
 3.8
 2.4
1.5
 1.5
1.5
 2.3
1.1
 3.4
5 LOC4350519 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 4350519 Os11g0482400 3.5 4.7
2.4
0.9
 1.2
-0.4
 1.5
 0.8
 -0.0
 0.5
 0.1
 2.1
6 LOC4342133 uncharacterized LOC4342133 4342133 Os06g0728500 3.5 4.5








7 LOC4339930 uncharacterized LOC4339930 4339930 Os06g0116400 3.5 4.4
 2.4
2.0
 3.5
1.6
 2.7
0.8
 0.3
-0.9
 0.7
0.5
 2.5
1.1
 1.7
0.9
 1.9
0.6
 1.2
8 LOC4342158 uncharacterized LOC4342158 4342158 Os06g0731700 3.5 5.0
1.6
1.6
 1.2
0.9
 -0.1
 -0.5
 -0.1
 1.2
 0.7
 2.9
9 LOC4332801 blue-light photoreceptor PHR2 4332801 Os03g0343400 3.5 4.7
 1.0
 3.2
2.4
 1.2
0.5
 1.5
 2.2
 2.7
-0.1
 1.9
0.6
 2.4
0.8
 1.5
10 LOC4349470 uncharacterized sugar kinase slr0537 4349470 Os10g0573000 3.3 4.5
 3.3
 2.7
1.3
 1.2
0.5
 0.9
 0.9
 3.8
 2.6
 2.6
 3.3
11 LOC4332243 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 4332243 Os03g0247000 3.3 4.4
 1.2
0.2
 1.8
0.9
 1.7
0.8
 0.9
0.1
 1.2
0.6
 2.4
1.7
 1.2
1.2
 2.1
1.7
 1.7
1.2
12 LOC4342069 uncharacterized LOC4342069 4342069 Os06g0715200 3.3 4.3
1.2
1.1
 0.4
0.0
 0.4
 0.7
 1.2
 0.7
 0.7
 0.3
13 LOC4352522 solute carrier family 40 member 2, chloroplastic-like 4352522 OSNPB_120562100 3.3 4.5
 2.4
 1.6
 1.3
 0.5
 2.7
 1.3
 2.6
 2.8
 2.7
14 LOC4332759 pentatricopeptide repeat-containing protein At5g41170, mitochondrial 4332759 Os03g0336000 3.3 4.0
1.5
 2.4
 0.8
 0.1
 0.2
 1.1
 0.4
 3.4
15 LOC4331318 UPF0187 protein At3g61320, chloroplastic 4331318 Os03g0106000 3.2 4.4
 2.5
-1.3
 1.2
1.1
 -0.6
-0.8
 2.5
 2.2
 1.1
 1.1
 0.1
 0.7
16 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 3.1 4.1








17 LOC4342113 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 4342113 OSNPB_060725900 3.1 4.5
 3.8
3.1
 2.7
1.6
 2.4
1.7
 0.2
 3.3
 5.5
2.2
 3.0
1.1
 2.4
0.8
 4.2
18 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 3.1 4.2
 1.1
0.5
 1.2
1.0
 1.7
1.3
 2.0
 2.0
 2.8
1.1
 2.0
1.0
 2.7
1.0
 1.0
0.8
19 LAS lethal albinic seedling 4329580 Os02g0538000 3.1 4.1
 2.9
 1.8
 0.1
 -0.2
 3.1
 2.2
 1.2
 0.7
 1.4
20 LOC4338700 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A 4338700 Os05g0395000 3.1 4.4
 0.6
 2.1
-0.4
 0.8
-0.8
 0.4
0.1
 0.4
-0.1
 -0.2
 1.5
 1.5
 2.7
21 LOC4340025 transketolase, chloroplastic 4340025 Os06g0133800 3.0 3.9
 2.2
0.4
 3.0
2.0
 3.4
2.1
 1.7
-0.8
 3.4
-0.9
 2.4
1.0
 2.1
1.2
 2.5
2.0
 1.9
-1.0
22 LOC112936097 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like 112936097 3.0 4.3
 3.3
 5.2
3.6
 2.5
2.1
 1.6
 1.4
 2.0
 1.5
 1.0
 2.0
23 LOC4325531 phosphoenolpyruvate carboxylase 1 4325531 Os01g0208700 3.0 3.8
 3.2
0.4
 3.2
1.6
 1.1
0.8
 1.7
0.2
 4.6
1.3
 1.0
0.4
 1.7
0.4
 1.8
0.4
 1.8
0.3
24 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 3.0 3.9








25 LOC4329695 uncharacterized LOC4329695 4329695 Os02g0564300 3.0 4.2
 -0.5
 4.6
3.7
 1.8
1.1
 1.5
 -0.2
 2.1
1.2
 3.0
1.8
 4.0
2.0
 2.1
2.1
26 LOC4329382 uncharacterized LOC4329382 4329382 Os02g0489500 3.0 3.7
 2.2
 0.9
 0.3
 0.2
 1.5
 -0.4
 0.4
 0.2
 0.7
27 LOC4340573 pentatricopeptide repeat-containing protein At5g06540 4340573 Os06g0231400 3.0 4.2
2.0
 -0.6
 0.5
 0.6
 -0.6
 0.4
 -0.2
28 LOC4330592 protein TIC 20-v, chloroplastic 4330592 Os02g0726600 2.9 3.6
 3.4
 4.3
1.4
 2.4
2.2
 1.5
 1.6
 2.1
 1.7
 2.1
 3.0
29 LOC4345120 uncharacterized LOC4345120 4345120 Os08g0266300 2.9 4.0
 3.3
 2.7
2.1
 3.3
2.5
 0.8
 1.8
 2.8
2.4
 2.8
2.6
 2.6
2.6
 1.9
30 LOC4348934 pentatricopeptide repeat-containing protein At1g09820 4348934 Os10g0484300 2.9 3.9








31 LOC4346004 uncharacterized LOC4346004 4346004 Os08g0510800 2.9 3.3
 2.7
 2.0
0.2
 1.4
1.2
 -0.5
 -0.6
 1.8
0.8
 1.2
0.8
 1.3
0.4
 2.3
32 LOC4336633 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic 4336633 Os04g0557000 2.9 3.9








33 LOC4348473 protein NRT1/ PTR FAMILY 8.3 4348473 Os10g0370700 2.9 3.7








34 LOC4347096 pentatricopeptide repeat-containing protein At4g30825, chloroplastic 4347096 Os09g0423300 2.9 3.9
 4.1
 4.8
 0.8
 1.1
 1.3
 3.1
 3.3
 2.5
 1.9
35 LOC4346577 sufE-like protein 1, chloroplastic/mitochondrial 4346577 Os09g0270900 2.9 3.7
2.3
 2.1
 1.5
 1.2
 2.4
1.2
 1.9
1.3
 1.4
1.0
 3.8
36 LOC4326576 peptide deformylase 1B, chloroplastic-like 4326576 OSNPB_010637600 2.9 3.8
 1.3
 1.3
0.6
 0.3
-0.7
 1.5
 2.8
 2.2
 2.0
 2.3
 1.3
37 LOC9271560 uncharacterized LOC9271560 9271560 2.8 4.0








38 LOC4335458 protein WHAT'S THIS FACTOR 1 4335458 Os04g0312100 2.8 3.5
 0.2
 0.8
 -0.3
 0.1
 -1.0
 0.1
 0.6
 -0.3
 2.1
39 LOC4331123 glutathionyl-hydroquinone reductase YqjG 4331123 Os02g0814800 2.8 3.1
 2.9
 2.9
 1.0
 1.9
 0.6
 2.3
 1.3
 1.2
 2.3
40 LOC4342860 uncharacterized LOC4342860 4342860 Os07g0258000 2.8 3.8








41 LOC4329554 uncharacterized protein At5g03900, chloroplastic 4329554 Os02g0533000 2.8 3.5
 4.0
 1.0
0.5
 0.5
-0.2
 1.1
 0.6
 2.2
 2.5
 2.2
 1.9
42 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 2.8 3.9
 5.4
 2.1
0.3
 0.2
-0.2
 0.7
 0.1
 1.0
0.9
 1.5
0.9
 1.9
1.1
 3.5
43 LOC4344479 uncharacterized LOC4344479 4344479 Os08g0110400 2.8 3.9
 0.1
 0.3
-0.2
 0.2
-0.2
 0.8
 1.7
 -0.0
-0.4
 0.8
0.5
 0.9
0.1
 1.1
44 LOC4330705 methyltransferase-like protein 7A 4330705 Os02g0744100 2.8 3.5
 1.5
1.4
 1.5
 0.7
 0.9
 2.4
 1.2
 1.2
 1.4
 -0.0
45 LOC4344347 rhodanese-like/PpiC domain-containing protein 12, chloroplastic 4344347 Os07g0687500 2.8 3.6
 -0.6
 -0.1
 -0.1
 0.2
 1.6
 -0.7
 0.0
 -0.0
 1.9
46 LOC4331152 protein LUTEIN DEFICIENT 5, chloroplastic 4331152 Os02g0817900 2.8 4.1
 2.7
 1.5
0.0
 1.3
1.0
 1.4
 3.6
 2.0
 1.7
 2.4
 0.5
47 LOC4348990 WAT1-related protein At3g02690, chloroplastic 4348990 Os10g0493900 2.7 3.6
 4.2
 3.5
3.4
 1.8
1.8
 1.4
 2.1
 2.1
 2.6
 1.0
 4.0
0.6
48 LOC4331815 ylmG homolog protein 2, chloroplastic 4331815 Os03g0178200 2.7 3.2
 1.0
 0.4
-0.2
 0.0
-0.4
 0.5
 1.0
 2.1
 0.9
 0.8
 1.7
49 LOC4328539 DNA repair protein RAD50 4328539 Os02g0186400 2.7 3.9
 3.9
 2.0
2.0
 3.6
3.1
 2.2
 4.5
 0.3
 0.4
 0.5
 3.1
50 LOC4324764 amidophosphoribosyltransferase, chloroplastic 4324764 Os01g0873100 2.7 3.8
 1.7
0.8
 2.0
1.1
 0.8
0.3
 0.9
 0.8
 1.6
1.0
 1.2
0.4
 0.9
0.7
 2.3
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