Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328917   protein TSS 
 osa-r.5   4328917   protein TSS 
 osa-m.8   4328917   protein TSS 
 ath-u.4   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100792534   protein TSS 
 gma-u.4   100806823   protein TSS 
 sly-u.4   101252601   protein TSS 
 ppo-u.4   7465978   protein TSS 
 ppo-u.4   7489422   protein TSS 
 mtr-u.4   112418287   protein TSS 

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Top 50 coexpressed genes to 4328917 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa860   Porphyrin metabolism  6 42 9.50
 osa130   Ubiquinone and other terpenoid-quinone biosynthesis  2 42 2.45
 osa51   Fructose and mannose metabolism  1 64 -
 osa1240   Biosynthesis of cofactors  3 248 -
 osa3010   Ribosome  3 353 -

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osa:LOC4328917 (protein TSS) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328917
osa-r.5
for
4328917
osa-m.8
for
4328917
ath-u.4
for
AT4G28080
gma-u.4
for
100792534
gma-u.4
for
100806823
sly-u.4
for
101252601
ppo-u.4
for
7465978
ppo-u.4
for
7489422
mtr-u.4
for
112418287
1 LOC4343046 protein TSS 4343046 Os07g0422000 7.6 7.5
 7.6
 10.4
 5.1
5.1
 5.8
4.9
 6.0
4.6
 2.7
2.3
 2.7
1.6
 1.0
2 LOC4348208 pentatricopeptide repeat-containing protein MRL1, chloroplastic 4348208 Os10g0181200 6.3 6.1
 6.6
 7.5
 5.3
3.5
 5.6
5.4
 2.4
 2.1
 2.7
 1.6
3 wsl5 white stripe leaf5 4337454 Os04g0684500 5.8 6.5
 5.0
 5.0
 3.0
2.5
 2.9
2.9
 3.7
2.6
 0.8
-0.3
 1.6
1.1
 0.7
4 LOC4352441 uncharacterized LOC4352441 4352441 Os12g0541500 5.7 6.0
 5.3
 6.0
 6.0
5.8
 5.6
5.3
 6.6
 4.1
 2.7
 2.0
5 LOC4336886 thylakoid lumenal 29 kDa protein, chloroplastic 4336886 Os04g0602100 5.5 6.4
 4.7
 2.0
 3.9
2.0
 2.8
2.1
 1.1
 2.2
 0.5
 2.6
6 LOC4329341 pentatricopeptide repeat-containing protein At1g09900 4329341 Os02g0470000 5.3 4.3
 6.2






7 LOC4345443 peptidyl-prolyl cis-trans isomerase, chloroplastic 4345443 Os08g0382400 5.1 5.3
 4.9
 2.8
 5.1
4.4
 4.9
4.6
 3.3
 0.7
 0.5
 2.6
8 LOC4324772 5'-3' exonuclease 4324772 Os01g0874800 5.1 5.2
 4.9
 -0.9
 1.1
 1.4
 0.3
 -0.5
 0.4
 0.8
9 LOC9268489 isochorismate synthase 1, chloroplastic 9268489 Os09g0361500 4.9 4.2
 5.6
 0.7
-0.5
 2.6
2.1
 2.1
1.7
 2.5
 1.5
 1.1
 1.9
10 LOC4347400 uncharacterized LOC4347400 4347400 Os09g0481800 4.8 5.0
 4.6
 1.9
 1.4
1.3
 0.9
0.8
 2.4
 2.3
 1.2
 0.8
11 LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like 4334537 OSNPB_030811100 4.8 4.4
 5.1
 2.9
 4.9
4.3
 4.9
3.4
 2.5
 1.6
 0.6
 0.9
12 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 4.6 5.1
 4.2






13 LOC4347935 protein TIC 62, chloroplastic-like 4347935 Os10g0100300 4.6 3.9
 5.3
 4.5
 6.3
5.3
 4.7
4.2
 3.0
 2.0
1.5
 1.4
0.8
 3.1
14 ASL2 Albino Seedling Lethal2 4328932 Os02g0259600 4.6 3.9
 5.3
 1.1
 3.7
3.6
 3.9
3.4
 3.9
 0.1
-0.1
 1.4
0.4
 0.8
15 LOC4347166 photosystem I chlorophyll a/b-binding protein 6, chloroplastic 4347166 Os09g0439500 4.6 4.2
 4.9
 4.4
 4.2
3.5
 4.7
3.6
 3.1
 2.0
 0.9
 3.1
16 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 4.6 4.2
 4.9
 2.0
 2.1
1.4
 0.7
0.1
 2.4
 1.3
1.0
 1.2
0.5
 1.3
17 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 4.6 4.1
 5.0
 0.5
 1.8
 1.6
 3.4
 1.9
0.7
 1.5
1.2
 0.1
18 LOC4325486 probable zinc metalloprotease EGY2, chloroplastic 4325486 OSNPB_010142100 4.5 3.8
 5.1
 2.8
 2.3
1.0
 3.2
0.4
 1.6
 1.8
 1.1
 1.8
19 LOC4337906 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4337906 Os05g0164100 4.4 4.6
 4.1
 4.8
 4.2
3.3
 4.5
2.4
 3.7
 0.8
0.1
 1.3
1.0
 0.1
-0.0
20 LOC4330746 photosynthetic NDH subunit of lumenal location 4, chloroplastic 4330746 Os02g0751600 4.4 4.7
 4.0
 2.8
 2.7
 2.0
1.0
 1.3
 2.3
21 LOC4331514 probable signal recognition particle 43 kDa protein, chloroplastic 4331514 OSNPB_030131900 4.3 3.7
 5.0
 2.6
 1.8
 3.0
 2.3
 0.9
0.7
 1.4
1.3
 1.7
22 LOC4342001 thylakoid lumenal 16.5 kDa protein, chloroplastic 4342001 Os06g0705100 4.3 4.9
 3.7
 1.2
 2.8
2.6
 3.8
2.9
 2.0
 2.4
1.2
 0.8
0.5
 2.4
23 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 4.3 4.9
 3.7
 0.7
 2.4
1.1
 2.4
1.2
 2.4
 2.1
 2.0
 1.0
0.1
24 LOC4346192 peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic 4346192 Os08g0541400 4.3 4.4
 4.1
 0.5
 3.8
3.6
 3.9
3.5
 2.1
 1.2
1.0
 1.7
0.5
 2.4
25 LOC4333259 magnesium-chelatase subunit ChlI, chloroplastic-like 4333259 OSNPB_030563300 4.2 5.6
 2.8
 2.2
0.7
 2.4
1.7
 2.1
1.7
 3.3
 2.2
0.5
 2.1
1.8
 2.9
-0.5
26 LOC4329862 rhodanese-like domain-containing protein 11, chloroplastic 4329862 Os02g0596000 4.2 3.3
 5.1
 1.0
 2.1
 1.9
 2.7
 -0.2
 0.5
 0.5
27 LOC4324965 uncharacterized LOC4324965 4324965 Os01g0894700 4.2 3.9
 4.5


2.3
1.9
 0.1
 -0.5
 2.7
28 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.2 4.3
 4.0
 2.8
 3.8
3.7
 3.1
3.0
 5.0
 3.0
1.5
 1.3
0.7
 1.5
29 LOC4324026 protein FLUORESCENT IN BLUE LIGHT, chloroplastic 4324026 Os01g0510600 4.1 4.4
 3.9
 0.8
 0.8
0.4
 1.3
0.8
 2.0
1.4
 -0.3
 0.5
 1.9
30 LOC4338667 50S ribosomal protein L1, chloroplastic 4338667 Os05g0388500 4.1 5.0
 3.2
 3.2
 5.4
4.2
 4.4
2.9
 3.6
 1.1
0.8
 0.9
0.5
 1.1
31 LOC4345177 probable adenylate kinase 5, chloroplastic 4345177 OSNPB_080288200 4.1 5.1
 3.0
 2.0
 4.9
3.2
 3.6
2.3
 2.3
 1.5
 1.1
 0.8
32 LOC4344589 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal 4344589 Os08g0130400 4.1 4.1
 4.1
 4.7
 5.1
4.4
 6.1
4.7
 3.2
 1.7
 1.6
 0.9
33 LOC4331439 nascent polypeptide-associated complex subunit alpha-like protein 1 4331439 Os03g0121700 4.0 3.4
 4.7
 1.7
1.5
 -0.4
-1.0
 -0.2
-1.1
 1.2
-0.7
 0.3
0.2
 0.6
0.6
 0.5
-0.1
34 LOC4326942 uncharacterized LOC4326942 4326942 Os01g0930000 4.0 5.4
 2.6
 2.3
 2.2
 2.1
 2.4
 -0.2
 0.9
 0.9
35 LOC4340015 magnesium protoporphyrin IX methyltransferase, chloroplastic 4340015 Os06g0132400 3.9 4.7
 3.2
 1.9
 3.3
2.9
 2.5
1.7
 2.3
 1.9
 1.3
 3.1
36 LOC4332227 protein SPA, chloroplastic 4332227 Os03g0244000 3.9 3.8
 4.1
 1.7
 2.6
1.3
 2.3
1.4
 3.2
 1.9
0.2
 0.2
0.0
 2.0
37 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 3.9 3.2
 4.6
 3.5
 3.6
3.4
 2.8
2.5
 4.9
 2.3
 2.3
 1.4
38 LOC4330413 phosphoribulokinase, chloroplastic 4330413 Os02g0698000 3.9 4.2
 3.6
 6.7
 2.9
1.5
 2.0
0.4
 2.3
 2.2
1.7
 2.3
1.7
 2.9
39 LOC4329844 inorganic phosphate transporter 2-1, chloroplastic 4329844 Os02g0593500 3.8 3.3
 4.4
 3.9
 4.4
3.3
 7.2
5.7
 5.0
 0.9
0.8
 1.9
1.2
 1.0
40 LOC4350679 uncharacterized protein At3g49140 4350679 Os11g0544000 3.8 4.3
 3.4
 3.4
0.9
 3.2
1.6
 1.8
1.7
 3.4
2.9
 -0.4
-1.0
 -0.3
-0.5
 1.9
41 LOC9270216 trigger factor 9270216 Os09g0515400 3.8 3.8
 3.8
 1.2
 2.8
 3.5
-0.0
 0.9
 0.4
42 LOC4336891 pentatricopeptide repeat-containing protein At3g22150, chloroplastic 4336891 Os04g0602600 3.8 3.9
 3.7
 6.0
 2.0
 2.5
 1.9
 1.4
 1.1
 0.9
43 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 3.8 3.6
 3.9
 4.2
 3.0
1.5
 2.9
1.2
 3.9
 1.5
0.9
 2.2
1.2
 2.5
44 LOC9266147 alanine--tRNA ligase, chloroplastic/mitochondrial-like 9266147 OSNPB_060245800 3.8 4.3
 3.3
 2.8
 6.2
5.0
 7.3
5.7
 5.4
 2.3
 2.1
 1.8
45 LOC4330740 pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like 4330740 OSNPB_020750400 3.8 3.6
 3.9
 1.5
 1.8
0.7
 2.4
0.5
 2.6
 0.2
 0.1
 1.4
46 LOC4325242 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 4325242 Os01g0960300 3.8 3.7
 3.9
 2.7
 4.2
3.7
 5.0
4.1
 4.1
 1.1
 1.8
 0.6
47 LOC4330711 geranylgeranyl diphosphate reductase, chloroplastic-like 4330711 OSNPB_020744900 3.8 3.2
 4.4
 2.4
 2.6
1.8
 2.0
1.2
 2.3
-0.7
 1.6
1.3
 2.2
1.6
 1.2
-0.1
48 LOC4326901 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic 4326901 Os01g0279100 3.8 3.4
 4.1
 1.6
 2.3
2.0
 1.8
1.5
 3.8
 1.7
 0.2
 2.0
49 LOC4351610 long chain acyl-CoA synthetase 9, chloroplastic 4351610 Os12g0168700 3.8 5.1
 2.4
 -0.1
 1.5
0.7
 2.5
-0.6
 -0.7
 1.5
1.2
 0.7
-0.7
 1.3
0.6
50 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200








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