Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4328965   chloroplast processing peptidase 
 osa-r.5   4328965   chloroplast processing peptidase 
 osa-m.8   4328965   chloroplast processing peptidase 
 ath-u.4   PLSP1   plastidic type i signal peptidase 1 
 gma-u.4   100785296   chloroplast processing peptidase 
 gma-u.4   100815810   chloroplast processing peptidase 
 sly-u.4   101250277   chloroplast processing peptidase 
 ppo-u.4   18100415   chloroplast processing peptidase 
 ppo-u.4   7458769   chloroplast processing peptidase 
 ppo-u.4   112328017   chloroplast processing peptidase-like 
 mtr-u.4   11417003   chloroplast processing peptidase 

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Top 50 coexpressed genes to 4328965 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  5 70 6.43
 osa860   Porphyrin metabolism  2 42 2.45
 osa270   Cysteine and methionine metabolism  1 122 -
 osa1230   Biosynthesis of amino acids  1 234 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4328965 (chloroplast processing peptidase) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4328965
osa-r.5
for
4328965
osa-m.8
for
4328965
ath-u.4
for
PLSP1
gma-u.4
for
100785296
gma-u.4
for
100815810
sly-u.4
for
101250277
ppo-u.4
for
18100415
ppo-u.4
for
7458769
ppo-u.4
for
112328017
mtr-u.4
for
11417003
1 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 7.6 7.0
 8.1
 3.2
2.0
 3.0
2.6
 6.2
5.3
 5.4
4.4
 1.2
1.2
 4.3
2.2
 0.6
0.6
 4.4
2 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 6.7 6.2
 7.3
 1.5
0.3
 2.6
2.0
 2.5
1.4
 2.4
 -0.1
-0.1
 2.7
1.6
 -0.1
-0.1
 2.7
0.9
3 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 6.7 6.6
 6.7
 3.1
 3.4
2.9
 5.1
4.5
 3.8
 1.3
 4.3
 1.8
 4.4
4 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 6.6 6.6
 6.5
 3.9
 4.4
2.6
 5.1
4.4
 3.3
 0.7
 3.8
 0.7
 4.8
5 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 6.4 6.1
 6.8
 3.9
1.5
 2.7
1.9
 4.0
4.0
 3.3
0.9
 2.1
1.5
 4.2
3.5
 2.2
1.5
 2.7
2.1
6 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 6.4 5.0
 7.8







7 LOC4346938 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic 4346938 OSNPB_090382400 6.4 5.1
 7.6
 3.7
 3.8
 4.9
 2.6
 2.3
 5.9
 2.2
 3.8
8 LOC4332899 uncharacterized LOC4332899 4332899 Os03g0363400 6.2 6.5
 6.0
 2.6
 4.4
 5.2
 2.0
 0.7
 2.5
 1.3
 0.3
-1.3
9 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 6.2 4.2
 8.2
 4.2
 2.8
0.9
 4.2
1.5
 2.1
 -0.2
 1.4
 0.7
 2.0
10 LOC4334632 transcription termination/antitermination protein NusG 4334632 Os03g0825500 6.0 4.9
 7.1
 7.1
 3.6
 5.3
 1.9
 0.7
 4.5
 -0.2
 4.2
11 LOC4326635 uroporphyrinogen decarboxylase 1, chloroplastic-like 4326635 OSNPB_010622300 6.0 6.9
 5.0
 2.6
 3.9
3.6
 6.6
6.3
 5.2
 0.9
 2.7
 1.3
 3.5
12 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 5.9 5.3
 6.5
 2.6
 4.3
 4.3
 3.0
 2.3
 1.7
 2.0
 2.0
13 LOC4330964 uncharacterized LOC4330964 4330964 Os02g0788500 5.9 5.6
 6.1
 5.6
 0.7
0.4
 3.4
0.0
 3.2
 1.6
0.7
 4.6
1.5
 1.5
1.0
 1.6
14 LOC4350906 serine--tRNA ligase, chloroplastic/mitochondrial 4350906 Os11g0610900 5.9 5.3
 6.5
 3.9
 2.7
 3.4
 2.9
 1.9
 3.9
 2.1
 1.7
15 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 5.9 5.6
 6.1
 3.2
 3.5
2.3
 5.1
4.6
 3.3
 2.3
 1.3
 2.8
 1.7
16 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 5.9 5.4
 6.3
 2.2
 3.2
3.0
 5.8
4.6
 4.4
1.5
 1.6
1.4
 3.4
1.6
 1.8
1.6
 2.1
17 LOC4349098 uncharacterized LOC4349098 4349098 Os10g0512500 5.8 5.7
 5.8
 5.0
 4.2
 5.0
 4.1
 1.7
 5.8
 1.7
 2.9
18 LOC4330767 histidine--tRNA ligase, chloroplastic/mitochondrial 4330767 Os02g0754700 5.7 6.0
 5.5
 5.6
0.2
 3.6
 6.4
 3.9
 2.1
 2.1
 2.3
 2.4
19 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 5.7 5.0
 6.5
 4.2
 2.9
2.4
 4.7
3.9
 4.7
 1.5
1.1
 3.9
3.4
 1.4
0.9
 3.9
2.1
20 LOC4345098 glutamyl-tRNA reductase-binding protein, chloroplastic 4345098 Os08g0254900 5.7 5.3
 6.1
 6.8
 3.1
 6.0
 4.3
 1.8
 6.9
 2.0
 4.3
21 LOC4346927 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic 4346927 Os09g0380200 5.7 5.8
 5.6
 2.4
 6.6
4.4
 7.5
6.1
 3.4
 2.4
 4.2
 2.0
 2.0
22 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 5.6 5.5
 5.7
 4.7
3.7
 4.2
3.1
 6.0
4.3
 3.8
3.1
 1.3
1.2
 4.3
3.8
 1.2
1.1
 2.7
2.5
23 wsl6 white stripe leaf6 9271571 OSNPB_050567300 5.6 5.4
 5.7
 6.2
 3.7
0.6
 4.5
0.2
 3.6
 0.8
 5.2
 1.2
 3.4
24 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 5.5 4.4
 6.7
 5.4
 1.9
 3.6
 3.4
 1.5
 2.6
 2.0
 3.5
25 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 5.5 5.6
 5.4
 4.7
 4.3
3.7
 4.6
3.9
 2.3
 1.9
1.5
 3.0
1.1
 2.0
1.6
 2.1
26 LOC4336463 uncharacterized LOC4336463 4336463 Os04g0527800 5.4 5.5
 5.3
 2.9
 3.5
3.5
 3.8
3.4
 5.6
 1.5
 4.9
 1.4
 4.1
27 LOC4327479 cysteine synthase-like 4327479 Os01g0814800 5.4 5.0
 5.7
 4.1


1.4
 2.5
 1.6
 2.0
28 LOC4330083 DEAD-box ATP-dependent RNA helicase 47A-like 4330083 OSNPB_020636300 5.3 6.1
 4.6
 3.5
 2.7
1.7
 4.9
2.7
 2.7
 0.6
 1.6
 0.5
 3.2
29 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 5.3 4.4
 6.2
 1.9
0.3
 1.7
0.6
 3.1
2.3
 3.7
1.8
 0.9
0.1
 2.7
0.5
 1.0
-0.3
 2.1
-0.9
30 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 5.3 5.1
 5.5
 5.0
 2.4
1.5
 5.3
4.5
 4.0
 0.3
 3.2
 1.0
 4.2
31 LOC4349426 10 kDa chaperonin 1, chloroplastic 4349426 Os10g0566700 5.3 5.9
 4.7
 5.9
2.7
 2.3
1.2
 3.7
3.6
 3.9
 1.0
0.6
 3.5
0.8
 0.9
0.7
 3.1
32 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 5.3 5.4
 5.2
 4.0
 3.7
1.8
 3.7
1.9
-0.0
 4.1
 0.7
 1.6
33 LOC4350988 GTPase Der 4350988 Os11g0638000 5.3 5.2
 5.3
 2.7
 3.6
 5.2
 2.6
 1.3
 2.0
 0.9
 1.2
34 LOC4332290 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic 4332290 Os03g0255200 5.3 5.0
 5.5
 6.5
 3.7
 4.6
 5.1
 1.3
 3.0
 1.6
 2.3
35 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 5.3 4.6
 5.9
 3.9
 4.5
3.3
 4.7
4.1
 2.3
 1.4
 3.3
 2.0
 2.1
36 wsl4 white stripe leaf4 4329703 Os02g0565400 5.2 3.3
 7.2







37 LOC4328994 proteinaceous RNase P 1, chloroplastic/mitochondrial 4328994 Os02g0273800 5.2 3.6
 6.8
1.3
 3.6
 2.2
 0.3
 0.3
 0.0
 1.5
38 LOC4352408 phenylalanine--tRNA ligase, chloroplastic/mitochondrial 4352408 Os12g0533700 5.2 4.4
 6.0
 7.8
 2.1
1.8
 3.1
1.7
 4.7
 1.1
 3.4
 1.1
 3.9
39 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 5.2 4.9
 5.5
1.7
 2.3
 0.7
 1.6
 0.8
 1.2
40 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 5.2 4.1
 6.2
 0.6
 1.6
1.1
 2.7
2.3
 3.0
 1.0
 0.9
 1.7
 1.5
41 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 5.2 3.5
 6.8
 5.4
 1.4
 3.1
 3.5
 1.4
 2.1
 1.8
 0.8
42 LOC4331268 uncharacterized LOC4331268 4331268 Os02g0833400 5.2 5.4
 5.0
 7.5
 3.3
3.3
 5.5
4.7
 4.1
 1.9
1.6
 5.5
2.0
 1.9
1.3
 3.9
43 LOC4327567 Ribonuclease III domain-containing protein RNC1, chloroplastic 4327567 OSNPB_010810100 5.2 6.1
 4.2
 4.8
 3.1
2.3
 5.6
5.2
 4.4
 0.4
 2.2
 1.1
 2.8
44 LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial 4342480 Os07g0165000 5.1 4.3
 6.0
 6.2
 4.1
3.0
 5.8
5.3
 3.0
 0.8
 2.5
 1.2
 3.3
45 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 5.1 3.4
 6.9
 5.8
 4.1
2.9
 5.4
3.2
 4.2
 1.6
0.7
 3.9
-0.8
 1.4
0.6
 3.1
46 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 5.1 5.6
 4.7
 3.1
 4.8
 6.1
 1.8
 1.1
 3.8
 1.4
 1.9
47 LOC4342588 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4342588 Os07g0185300 5.1 5.2
 5.1
 2.7
0.9
 4.2
3.5
 6.8
5.5
 5.0
 3.1
 3.4
 2.6
 2.5
48 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 5.1 4.9
 5.4
 3.7
 3.6
1.4
 6.4
5.2
 4.0
 2.5
2.1
 2.6
1.8
 2.0
2.0
 2.1
49 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 5.1 5.1
 5.1
 9.5
3.8
 4.1
3.4
 8.6
6.7
 6.7
 2.7
2.2
 4.0
3.5
 2.2
2.2
 5.4
2.3
50 LOC9269607 uncharacterized LOC9269607 9269607 Os02g0266500 5.1 5.6
 4.6
 -0.4
 1.8
 1.1
 3.2
 1.0
 3.3
 1.9
 0.8
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