Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4329586   ribonuclease J 
 osa-r.5   4329586   ribonuclease J 
 osa-m.8   4329586   ribonuclease J 
 ath-u.4   emb2746   RNA-metabolising metallo-beta-lactamase family protein 
 gma-u.4   100783850   ribonuclease J 
 gma-u.4   100779771   ribonuclease J 
 gma-u.4   100814619   ribonuclease J 
 sly-u.4   101264202   ribonuclease J 
 ppo-u.4   7463114   ribonuclease J 
 ppo-u.4   7454544   ribonuclease J 
 mtr-u.4   11405571   ribonuclease J 
 mtr-u.4   11427815   ribonuclease J 

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Top 50 coexpressed genes to 4329586 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  4 35 6.06
 osa3018   RNA degradation  3 107 2.83
 osa730   Thiamine metabolism  2 22 3.01
 osa860   Porphyrin metabolism  1 42 -
 osa1240   Biosynthesis of cofactors  3 248 -

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osa:LOC4329586 (ribonuclease J) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4329586
osa-r.5
for
4329586
osa-m.8
for
4329586
ath-u.4
for
emb2746
gma-u.4
for
100783850
gma-u.4
for
100779771
gma-u.4
for
100814619
sly-u.4
for
101264202
ppo-u.4
for
7463114
ppo-u.4
for
7454544
mtr-u.4
for
11405571
mtr-u.4
for
11427815
1 LOC4332353 uncharacterized LOC4332353 4332353 Os03g0265900 9.1 10.8
 7.5
 0.3
 1.1
0.7
 0.9
0.8
 4.0
3.1
 2.1
0.2
 2.8
-1.0
 2.3
-2.1
 0.5
-0.4
 3.8
-0.8
2 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 8.8 10.3
 7.3
 6.2
 6.3
4.3
 7.3
4.1
 8.3
3.0
 5.2
 3.6
1.9
 3.3
2.8
 -1.2
 7.3
3 LOC4334623 pentatricopeptide repeat-containing protein At1g74850, chloroplastic 4334623 Os03g0824100 8.5 9.0
 8.0
 4.9
 3.9
3.1
 5.1
4.0
 3.6
3.6
 6.8
 2.9
 5.3
 -0.5
 2.4
4 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 8.0 9.0
 7.0
 5.7
1.9
 2.4
2.1
 5.2
3.3
 4.2
3.8
 6.0
 2.0
1.9
 3.3
3.3
 1.3
-0.1
 2.9
0.8
5 LOC4334387 probable zinc metalloprotease EGY1, chloroplastic 4334387 OSNPB_030792400 8.0 8.9
 7.1
 4.5
 2.5
1.6
 4.0
2.7
 3.8
3.3
 4.7
 2.5
 1.1
 -0.2
 4.0
6 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 7.7 8.9
 6.5
 1.5
 2.5
2.1
 4.0
2.9
 2.2
1.7
 2.6
 1.3
1.0
 1.8
0.9
 -0.4
-0.8
 1.8
1.7
7 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 7.6 8.4
 6.9
 1.4
 0.3
 2.0
 2.1
 1.3
 2.0
 1.9
 -1.1
 1.9
8 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 7.2 6.8
 7.6
 3.4
 4.4
 6.4
 7.1
 4.3

-0.6
 4.1
9 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 7.0 7.1
 6.9
 5.4
 3.0
1.4
 7.5
5.7
 4.1
1.5
 5.0
 2.1
 3.7
 0.7
 1.7
10 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 6.9 7.4
 6.4
 0.3
 2.6
1.8
 3.7
3.7
 5.3
3.7
 2.4
 1.3
0.4
 1.1
0.4
 0.2
-0.1
 3.5
-2.4
11 LOC4344001 29 kDa ribonucleoprotein A, chloroplastic 4344001 Os07g0631900 6.8 7.5
 6.1
 8.4
4.2
 4.0
3.1
 6.6
6.0
 8.4
6.8
 8.0
4.9
 4.6
2.9
 4.9
2.9
 0.6
 5.2
12 LOC4330000 two-component response regulator-like PRR1 4330000 OSNPB_020618200 6.7 8.2
 5.2
 3.1
 4.3
2.1
 5.4
2.5
 5.5
3.6
 1.6
1.5
 2.1
 2.1
 0.6
0.3
 2.1
1.9
13 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 6.7 6.6
 6.8
 4.7
 0.4
0.1
 2.9
0.6
 3.5
2.8
 3.1
 3.8
 4.6
 -1.0
 3.7
14 LOC4333719 phosphomethylpyrimidine synthase, chloroplastic 4333719 Os03g0679700 6.5 7.0
 6.0
 4.2
 3.9
2.5
 4.3
2.6
 4.0
2.0
 3.4
 2.3
2.0
 2.5
1.7
 0.2
 2.2
15 LOC4328457 ribosomal RNA large subunit methyltransferase I 4328457 Os02g0173700 6.5 5.3
 7.6
 2.8
 2.7
 2.4
 3.1
1.7
 1.9
 -0.1
 3.9
16 LOC4339536 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4339536 Os05g0551900 6.5 9.1
5.8
 5.6
3.2
 6.4
4.2
 9.2
5.2
 8.1
 4.1
 5.9
 0.1
-0.6
 2.9
2.6
17 LOC4326932 bifunctional nuclease 1-like 4326932 OSNPB_010702000 6.4 7.0
 5.8








18 LOC4338807 thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic 4338807 Os05g0417200 6.4 6.5
 6.3
 5.1
 3.5
 5.4
 3.6
 3.9
 1.8
 3.5
 -0.7
 3.9
19 LOC4325191 RING finger and transmembrane domain-containing protein 2 4325191 Os01g0168400 6.4 5.1
 7.7
 -1.6
 0.7
0.6
 0.1
-0.0
 -0.2
-0.5
 1.9
-0.0
 1.0
0.1
 0.8
0.4
 -0.2
-1.5
 -0.9
-0.9
20 LOC4350698 adagio-like protein 3 4350698 OSNPB_110547000 6.3 6.5
 6.1
 0.8
 3.5
3.1
 1.8
1.3
 5.6
3.9
 3.5
 3.4
3.0
 4.3
3.6
 0.3
 5.6
21 LOC4333342 uncharacterized LOC4333342 4333342 Os03g0586500 6.0 7.4
 4.5
 0.8
 2.7
1.7
 3.0
2.1
 3.8
2.2
 3.4
 -0.4
 0.9
 -0.2
 3.6
22 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 6.0 6.6
 5.4
 0.5
 4.4
3.9
 3.6
3.2
 2.9
2.5
 1.5
 2.0
1.6
 2.1
1.0
 -0.6
 2.2
23 LOC4325154 aspartic proteinase-like 4325154 Os01g0290000 5.9 6.2
 5.7
 0.7
0.0
 0.6
0.2
 1.2
0.7
 -0.0
-0.3
 0.5
0.2
 1.2
1.0
 1.7
1.6
 1.7
-0.3
 2.2
0.6
24 LOC4336948 methionine aminopeptidase 1B, chloroplastic 4336948 Os04g0610500 5.8 6.0
 5.6
 12.1
 2.3
1.6
 4.3
4.1
 4.5
4.0
 5.0
 3.2
 3.8
 0.1
 3.7
25 LOC4331339 DEAD-box ATP-dependent RNA helicase 50-like 4331339 OSNPB_030108600 5.8 4.6
 7.0
 5.2
 1.8
1.5
 4.3
3.5
 4.3
3.7
 5.0
 2.0
 4.3
 -1.7
 2.5
26 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 5.7 4.6
 6.9
 3.6
 2.8
1.9
 6.0
4.3
 3.7
3.0
2.7
 1.8
 1.0
 3.5
27 LOC4345611 chaperonin-like RBCX protein 1, chloroplastic 4345611 Os08g0425200 5.7 4.0
 7.5
 2.7
 1.4
1.2
 1.9
1.4
 3.2
2.8
 1.7
 1.0
 1.3
 -0.1
 3.9
28 LOC4349831 two-component response regulator-like APRR3 4349831 Os11g0157600 5.7 5.4
 5.9








29 LOC4328685 plastidic ATP/ADP-transporter 4328685 Os02g0208100 5.6 5.6
 5.7
 2.2
-0.2
 3.8
3.7
 4.6
4.4
 3.7
3.5
 4.0
1.9
 1.0
 1.4
 -0.8
-1.2
 2.7
1.6
30 LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like 4345779 Os08g0463900 5.4 5.5
 5.4
 0.5
 0.1
 -0.1
 0.8
 3.3
 1.1
 2.8
 -1.9
 1.8
31 LOC4332471 pentatricopeptide repeat-containing protein At5g02830, chloroplastic 4332471 Os03g0284900 5.4 3.6
 7.3
 0.5
 2.2
 4.5
 4.1
 1.6
 2.0
 2.8
 0.2
 6.0
32 LOC4325304 pentatricopeptide repeat-containing protein At4g21190 4325304 Os01g0757700 5.3 5.1
 5.6
 5.0
 5.7
4.5
 5.5
3.8
 8.4
7.2
 6.0
 1.9
 2.7
 -1.0
 2.3
33 LOC4350988 GTPase Der 4350988 Os11g0638000 5.3 6.3
 4.3
 8.5
 4.3
 6.2
 6.8
 6.5
 1.8
 2.2
 -0.1
 3.8
34 LOC112936032 pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like 112936032 5.3 7.4
6.0
 6.4
 8.6
 5.2
 3.3
 4.4
3.5
 3.9
3.9
 0.2
 4.6
35 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 5.3 5.8
 4.7
 4.1
 1.6
0.3
 2.6
1.8
 2.4
1.8
 2.9
 2.5
 3.8
 -0.1
 2.1
36 LOC4330883 uncharacterized LOC4330883 4330883 Os02g0773500 5.2 4.8
 5.7








37 LOC4344860 pentatricopeptide repeat-containing protein At3g59040 4344860 Os08g0191900 5.2 6.5
 3.9
 5.6
 4.0
3.9
 5.9
4.8
 6.8
6.4
 6.9
 4.1
 4.5
 -0.9
 6.6
38 LOC4347674 two-component response regulator-like PRR95 4347674 OSNPB_090532400 5.2 6.0
 4.3
 1.0
-0.8
 3.7
2.7
 2.1
1.9
 5.3
5.0
 4.5
3.2
 3.4
2.5
 3.5
3.4
 -1.3
-2.5
 4.8
-0.3
39 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 5.2 5.5
 4.9
 6.6
 5.5
 5.6
 5.3
 3.6
 2.7
 3.6
 0.3
 5.4
40 LOC4324952 5'-3' exoribonuclease 3 4324952 Os01g0872700 5.1 5.0
 5.2
 1.6
0.6
 2.4
2.2
 1.4
1.3
 2.4
2.1
 2.1
1.7
 3.2
1.6
 2.5
1.2
 0.8
0.4
 0.8
-0.1
41 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 5.1 5.9
 4.4
 2.7
 3.3
2.2
 7.6
5.7
 7.3
5.7
 4.3
2.4
 3.3
3.1
 3.3
2.4
 -0.1
 3.0
42 LOC4339629 uncharacterized LOC4339629 4339629 Os05g0565500 5.1 4.3
 5.9
3.1
1.1
 4.0
1.7
 4.1
1.9
 3.0
 2.8
 2.0
 0.4
 2.4
43 LOC4326442 light-regulated protein, chloroplastic-like 4326442 OSNPB_010102900 5.1 6.0
 4.1
 0.9
 1.9
0.1
 1.7
1.0
 5.6
2.9
 1.1
 0.9
 0.2
 -0.4
 2.6
44 LOC4343262 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 4343262 Os07g0489800 5.0 4.0
 6.0
 1.4
 -0.3
-1.0
 2.4
1.8
 2.8
1.9
 1.6
 1.5
 1.0
 -0.1
 1.0
45 LOC4326610 psbP domain-containing protein 5, chloroplastic 4326610 Os01g0617900 5.0 5.2
 4.7
 2.9
 2.3
1.5
 4.0
3.6
 3.2
3.2
 5.3
 1.1
 0.2
 -0.5
 2.5
46 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 4.9 4.1
 5.7
 -0.7
 1.7
1.2
 2.8
2.2
 1.6
1.5
 5.8
-0.2
 1.6
0.9
 2.3
0.7
 0.8
0.7
 1.9
0.6
47 LOC4337691 uncharacterized LOC4337691 4337691 Os05g0128100 4.8 4.8
 4.9
 -0.4
 2.4
1.9
 4.1
3.0
 5.7
2.7
0.9
 0.2
 -0.2
 2.3
48 LOC4334836 pentatricopeptide repeat-containing protein At5g46580, chloroplastic 4334836 Os03g0856100 4.8 3.5
 6.2
 7.0
 3.8
3.4
 7.9
7.1
 6.4
6.3
 5.4
 3.8
 4.1
 -1.3
 3.8
49 LOC4324058 NF-X1-type zinc finger protein NFXL2 4324058 Os01g0158900 4.8 4.2
 5.5
 -0.9
 1.2
0.5
 -0.1
-0.2
 -0.1
-0.2
 -0.9
 0.6
 0.4
 0.0
 -0.5
50 LOC107275738 chaperonin 60 subunit beta 4, chloroplastic 107275738 Os04g0443900 4.8 6.5
7.5
5.4
 6.7
2.8
 7.6
4.4
 7.8
7.1
 4.8
4.2
 3.4
0.5
 3.3
1.4
 0.8
-0.2
 2.7
2.1
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