Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4329738   cryptochrome-1 
 osa-r.5   4329738   cryptochrome-1 
 osa-m.8   4329738   cryptochrome-1 
 osa-u.4   4336008   cryptochrome-1 
 ath-u.4   CRY1   cryptochrome 1 
 gma-u.4   100797839   cryptochrome-1-like 
 gma-u.4   CRY1a   cryptochrome 1 
 gma-u.4   100786551   cryptochrome-1-like 
 sly-u.4   CRY1a   cryptochrome 1 
 sly-u.4   Cry1b   cryptochrome 1b 
 ppo-u.4   7486597   cryptochrome-1 
 ppo-u.4   7495156   cryptochrome-1 
 mtr-u.4   11428875   cryptochrome-1 

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Top 50 coexpressed genes to 4329738 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  2 34 2.63
 osa20   Citrate cycle (TCA cycle)  1 60 -
 osa710   Carbon fixation in photosynthetic organisms  2 77 -
 osa620   Pyruvate metabolism  2 100 -
 osa1200   Carbon metabolism  2 273 -

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osa:LOC4329738 (cryptochrome-1) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4329738
osa-r.5
for
4329738
osa-m.8
for
4329738
osa-u.4
for
4336008
ath-u.4
for
CRY1
gma-u.4
for
100797839
gma-u.4
for
CRY1a
gma-u.4
for
100786551
sly-u.4
for
CRY1a
sly-u.4
for
Cry1b
ppo-u.4
for
7486597
ppo-u.4
for
7495156
mtr-u.4
for
11428875
1 LOC4336008 cryptochrome-1 4336008 Os04g0452100 5.3 4.1
 6.5
 5.3
10.9
4.7
 10.9
5.0
 12.6
5.0
 3.3
 3.3
 6.4
 6.4
2 LOC4330159 ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like 4330159 OSNPB_020649700 4.6 4.7
 4.5
 3.6
 4.7
0.5
 1.8
1.7
 1.7
1.3
 3.3
2.8
 2.8
 0.8
 0.5
0.4
 3.0
0.6
 3.0
3 LOC4336288 zinc finger protein CONSTANS-LIKE 3 4336288 Os04g0497700 4.4 2.9
 5.9
 3.7
1.6
 3.9
3.9
 5.6
4.5
 3.7
2.8
 4.8
4.4
 2.7
2.2
 4.0
3.1
 4.9
2.7
 4.4
2.8
 6.6
4.5
4 LOC4325645 protein PLASTID MOVEMENT IMPAIRED 2 4325645 Os01g0692300 4.3 3.2
 5.5
 3.4
 1.0
 2.1
1.8
 1.4
1.0
 2.7
2.1
 2.0
 3.0
 0.8
 0.1
 2.1
5 LOC4349837 BEL1-like homeodomain protein 1 4349837 Os11g0158832 4.3 3.7
 4.8
 1.1
 0.1
 2.3
1.9
 2.8
2.6
 2.4
1.6
 3.5
2.2
 2.0
0.6
 1.7
1.7
 4.1
3.1
 2.8
1.7
6 LOC4338069 B-box zinc finger protein 22 4338069 Os05g0204600 4.2 3.7
 4.6
 1.9
0.1








7 LOC4332159 U-box domain-containing protein 75-like 4332159 Os03g0232600 4.2 4.1
 4.3
 3.1
 0.6
-0.9
 0.1
-0.3
 1.2
0.1
 0.6
0.5
 1.6
 0.4
 1.0
0.4
 1.3
0.2
 -0.9
-1.1
8 LOC4334291 proline-rich receptor-like protein kinase PERK4 4334291 Os03g0776100 4.1 4.4
 3.7
 1.7
0.8
 1.6
1.3
 0.9
0.5
 0.9
0.8
 1.9
1.8
 2.2
1.3
 0.3
0.3
 0.9
0.3
 0.9
0.6
 1.2
0.5
9 LOC4352523 pentatricopeptide repeat-containing protein At2g31400, chloroplastic 4352523 Os12g0562300 4.0 3.6
 4.3
 2.0
 1.7
 -0.0
-0.6
 1.0
0.4
 1.0
0.6
 1.4
 0.4
 1.4
1.0
 2.7
1.9
 1.5
0.4
10 LOC4326617 ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial-like 4326617 OSNPB_010618800 4.0 5.4
 2.5
 2.5
 2.9
 2.4
1.1
 1.9
1.1
 2.1
0.6
 1.2
 2.2
 2.8
0.1
 3.0
-0.1
 0.8
11 LOC4331196 uncharacterized LOC4331196 4331196 Os02g0823300 3.9 4.5
 3.3
 1.7
0.3
 1.4
0.9
 0.8
0.6
 0.1
-0.4
 2.9
2.1
 2.2
1.3
 -0.4
-0.8
 1.4
0.5
 2.2
2.1
 3.4
2.1
12 LOC4332288 protein FAR1-RELATED SEQUENCE 6 4332288 Os03g0255000 3.9 4.3
 3.5
 3.3








13 LOC4342180 glutamate receptor 3.4 4342180 Os07g0103100 3.9 3.5
 4.2
 1.6
1.5
 1.2
0.5
 1.9
1.2
 2.6
1.8
 1.8
0.6
 1.1
0.7
 2.4
0.9
 1.2
-0.1
 0.4
-0.3
 4.2
14 LOC4337692 zinc finger CCCH domain-containing protein 33-like 4337692 OSNPB_050128200 3.8 3.1
 4.5
 1.4
 1.2
-0.2
 1.0
1.0
 0.8
0.8
 0.9
0.7
 1.2
1.1
 1.1
0.2
 1.0
1.0
 1.7
1.5
 1.2
0.6
15 LOC4346276 protein indeterminate-domain 6, chloroplastic 4346276 Os08g0554400 3.8 3.8
 3.8
 2.7
2.1
 3.0
1.9
 1.3
1.1
 1.2
0.9
 1.8
1.3

4.1
2.5
 1.8
1.1
 2.1
1.7
16 LOC4335426 phototropin-2-like 4335426 OSNPB_040304200 3.8 4.2
 3.4
 2.7
 1.3
 4.2
3.4
 3.4
1.5
 3.6
2.4
 2.7
 4.2
 2.6
1.9
 1.0
0.7
 0.9
17 LOC4333726 BEL1-like homeodomain protein 7 4333726 Os03g0680800 3.7 2.9
 4.6
 3.1
2.3
 2.9
2.2
 0.9
0.8
 0.8
0.4
 3.2
2.9
 2.0
1.8
 1.5
-0.2
 1.6
1.0
 3.7
3.1
 1.8
0.1
18 LOC4330752 ethylene-responsive transcription factor RAP2-4 4330752 Os02g0752800 3.7 3.8
 3.6
 1.9
1.5
 0.0
-0.0
 0.6
0.5
 0.7
0.3
 2.4
1.8
 0.9
-0.4
 1.6
0.7
 2.4
1.8
 2.2
1.5
 1.7
0.3
19 LOC4326912 F-box protein At2g32560 4326912 Os01g0281000 3.7 3.7
 3.7
 2.2
 2.3
0.6
 2.6
2.2
 2.3
2.2
 4.1
3.0
 1.1
0.3
 2.5
1.1
 1.5
1.4
 3.7
3.2
 2.0
0.0
20 LOC4349359 metalloendoproteinase 1-MMP 4349359 Os10g0557900 3.6 3.9
 3.3
 2.5
0.4
-0.0
 1.3
-0.1
 1.2
1.2
 1.3
 -0.7
 0.4
 0.0
 0.4
-0.1
21 LOC4335314 histone H1 4335314 Os04g0253000 3.6 4.3
 2.8
 2.2
-0.3
 1.6
0.3
 1.9
1.3
 1.3
1.3
 1.2
0.9
 0.4
-0.3
 0.7
0.6
 2.3
1.5
 2.3
2.1
 0.3
0.0
22 LOC4344671 cytochrome P450 89A2 4344671 Os08g0152400 3.6 3.6
 3.5
 2.5
0.7
 1.3
0.6
 2.0
1.3
 2.2
1.9
 2.0
1.9
 2.3
1.2
 3.3
1.5
 2.8
1.7
 2.6
2.2
 1.9
0.5
23 LOC4329023 protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 4329023 Os02g0281000 3.5 4.6
 2.4
 3.7
 4.2
 2.0
0.3
 2.5
1.0
 1.8
1.6
 2.1
 0.1
 2.0
 3.3
 2.9
24 LOC9271519 ethylene-responsive transcription factor-like protein At4g13040 9271519 Os02g0499000 3.5 3.6
 3.4
 2.9
 -0.7
 -1.7
-2.0
 -1.8
-2.1
 0.4
-2.0
 0.7
 -0.1
 0.5
 2.0
 0.4
-0.5
25 LOC4350361 ABC transporter G family member 28 4350361 Os11g0416900 3.5 3.7
 3.3
 2.3
1.7
 -0.9
 0.3
-1.0
 0.1
-0.4
 -0.8
-1.4
 0.4
-0.1
 0.1
-0.1
 -0.9
 -2.0
 0.3
26 LOC4331999 BTB/POZ domain-containing protein SR1IP1 4331999 Os03g0206700 3.5 3.5
 3.5
 4.3
 0.9
 1.1
0.8
 1.5
1.4
 2.1
1.6
 3.5
0.5
 3.8
1.6
 3.2
 2.5
 1.8
-1.0
27 LOC4333674 disease resistance protein RGA5-like 4333674 3.5 4.7
 2.3
 4.1
1.9








28 LOC4324366 uncharacterized LOC4324366 4324366 Os01g0919600 3.4 3.7
 3.1
 0.6
 0.6
-1.2
 1.2
0.8
 1.0
0.5
 0.4
0.2
 0.3
-1.6
 -0.4
-0.9
 4.2
1.5
 3.3
1.8
 -0.9
-1.3
29 LOC4352890 BEL1-like homeodomain protein 7 4352890 Os12g0636200 3.4 3.3
 3.5
 3.1
2.3
 2.9
2.2
 0.9
0.8
 0.8
0.4
 3.2
2.9
 2.0
1.8
 1.5
-0.2
 1.6
1.0
 3.7
3.1
 1.8
0.1
30 LOC4336511 peroxisomal membrane protein 11-4-like 4336511 OSNPB_040534600 3.4 3.0
 3.8
 3.4
 -0.3
 0.8
-0.2
 1.7
-0.5
 0.6
0.5
 0.5
 2.1
 1.2
-0.5
 -0.5
-0.9
 -0.4
31 LOC4339408 uncharacterized LOC4339408 4339408 Os05g0530300 3.3 3.8
 2.8
 2.9
2.8
 1.6
1.1
 0.8
0.1
 0.4
-0.3
 1.7
1.5
 0.8
 0.7
 2.2
2.0
 3.6
1.9
 1.7
32 LOC4352807 K(+) efflux antiporter 3, chloroplastic 4352807 3.3 3.7
 2.8
 2.7
 3.9
 1.3
0.7
 0.6
0.6
 2.7
2.5
 1.7
 0.2
 2.3
 0.8
 6.6
33 LOC4334805 ankyrin repeat domain-containing protein 2A 4334805 Os03g0851700 3.3 3.9
 2.6
 2.6
-1.0
 1.7
0.3
 0.7
-0.1
 1.5
0.1
 2.5
1.8
 0.9
 3.0
 0.5
 2.9
 1.3
34 LOC4352611 uncharacterized LOC4352611 4352611 Os12g0576300 3.2 4.3
 2.2
 1.2
 1.9
1.5
 0.5
0.3
 0.3
-0.7
 1.0
0.9
 1.2
 0.1
 1.9
0.4
 1.7
0.5
 1.2
35 LOC4330280 protein indeterminate-domain 4, chloroplastic 4330280 Os02g0672100 3.2 3.3
 3.2
 2.7
2.1
 3.0
1.9
 1.3
1.1
 1.2
0.9
 1.8
1.3

4.1
2.5
 1.8
1.1
 2.1
1.7
36 LOC4343665 protein TIME FOR COFFEE 4343665 Os07g0571100 3.2 3.7
 2.8
 1.5
 0.6
 2.1
1.2
 0.6
0.2
 0.4
0.1
 2.5
 1.0
 0.8
0.7
 3.7
3.1
 1.4
37 LOC4328520 homeobox protein knotted-1-like 2 4328520 OSNPB_020182800 3.2 3.7
 2.8
 2.4
2.4
 2.3
0.6
 4.8
1.9
 3.3
1.0
 2.8
1.2
 1.7
1.5
 2.4
0.9
 2.6
1.9
 2.5
1.5
 3.1
1.4
38 LOC4328793 receptor-like protein kinase 5 4328793 Os02g0228300 3.2 3.5
 2.9
 2.4
1.0
 -0.8
 3.4
1.6
 1.5
1.3
 0.1
-0.0
 0.3
-1.0
 0.6
-0.1
 1.4
0.7
 0.5
0.4
 0.3
0.1
39 LOC4325531 phosphoenolpyruvate carboxylase 1 4325531 Os01g0208700 3.2 2.8
 3.5
 1.1
0.4
 3.6
1.2
 1.7
0.4
 2.5
2.0
 2.9
1.1
 3.8
2.7
 4.5
0.5
 1.0
0.3
 1.9
1.4
 2.8
2.4
40 LOC4334274 malate dehydrogenase, glyoxysomal-like 4334274 Os03g0773800 3.2 4.2
 2.1
 1.9
-0.0
 0.5
-0.1
 0.7
0.3
 0.8
-0.1
 1.9
1.3
 3.0
-0.6
 2.0
-2.4
 1.4
0.9
 0.9
-0.2
 2.1
-1.4
41 LOC4331797 solute carrier family 25 member 44 4331797 Os03g0175200 3.1 2.9
 3.4
 1.0
 4.0
1.1
 1.3
1.1
 1.9
1.5
 1.2
0.7
 -1.7
 1.7
 1.5
1.2
 3.2
1.6
 0.9
0.4
42 LOC4330982 protein TIC 55, chloroplastic 4330982 Os02g0792800 3.1 3.6
 2.7
 3.5
 1.2
 2.6
1.5
 3.1
2.4
 4.0
3.0
 2.9
 4.6
 4.3
3.9
 3.1
1.9
 6.7
43 LOC4345803 uncharacterized LOC4345803 4345803 Os08g0469700 3.1 3.1
 3.2
 2.0
0.8
 3.3
0.0
 1.0
0.5
 0.8
0.2
 1.0
0.5
 0.3
-0.1
 1.6
-1.3
 2.4
2.1
 2.0
1.9
 2.8
0.4
44 LOC9272053 chloroplast sensor kinase, chloroplastic 9272053 Os12g0293000 3.1 2.6
 3.7
 3.9
 2.8
 -0.5
-1.0
 0.2
-0.8
 -0.4
-1.4
 2.9
 1.6
 2.0
 2.9
 2.7
45 LOC4328647 EIN3-binding F-box protein 1 4328647 Os02g0200900 3.1 3.0
 3.2
 2.6
2.5
 0.8
0.5
 2.3
1.9
 2.1
1.7
 2.0
1.9
 1.9
1.2
 0.8
-0.2
 2.5
1.8
 3.3
2.7
 1.0
0.9
46 LOC4342137 phytoene synthase 2, chloroplastic 4342137 OSNPB_060729000 3.1 4.0
 2.2
 2.3
1.7
 2.4
 1.3
0.6
 1.8
1.7
 3.0
2.3
 3.7
0.5
 1.4
1.3
 2.8
2.4
 2.2
0.6
 1.2
1.2
47 LOC4326363 probable transcription factor GLK2 4326363 OSNPB_010239000 3.1 2.1
 4.2
 2.9
2.9
 4.7
0.5
 2.8
2.7
 3.4
2.6
 2.8
2.0
 3.2
0.8
 2.5
2.4
 1.0
1.0
 1.1
1.1
 4.6
0.6
48 LOC4340087 protein HEADING DATE 3B-like 4340087 Os06g0142600 3.1 4.1
 2.1
 4.4
0.7
 1.5
 0.5
0.3
 1.1
0.8
 1.4
0.3
 3.5
3.4
 2.3
1.9
 2.4
0.9
 1.7
1.2
 0.9
-1.9
49 LOC4349616 root phototropism protein 2 4349616 Os11g0118300 3.1 3.6
 2.6
 2.3
1.4
 5.2
 2.6
2.3
 3.1
2.7
 3.5
2.7
 2.0
 2.5
 2.3
1.1
 2.0
1.0
 4.7
3.1
50 LOC4335734 probable BOI-related E3 ubiquitin-protein ligase 3 4335734 Os04g0402500

1.7
0.3








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