Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4330262   tRNA pseudouridine synthase A 
 osa-r.5   4330262   tRNA pseudouridine synthase A 
 osa-m.8   4330262   tRNA pseudouridine synthase A 
 ath-u.4   AT1G20370   Pseudouridine synthase family protein 
 ath-u.4   AT1G76120   Pseudouridine synthase family protein 
 gma-u.4   100778978   tRNA pseudouridine synthase A 
 gma-u.4   100811976   tRNA pseudouridine synthase A-like 
 sly-u.4   101250299   tRNA pseudouridine synthase A 
 ppo-u.4   7490609   tRNA pseudouridine synthase A 
 ppo-u.4   7485628   tRNA pseudouridine synthase A 
 mtr-u.4   11442694   tRNA pseudouridine synthase A 
 mtr-u.4   11440088   tRNA pseudouridine synthase A 

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Top 50 coexpressed genes to 4330262 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3008   Ribosome biogenesis in eukaryotes  8 86 11.00
 osa3013   Nucleocytoplasmic transport  4 109 4.09
 osa3020   RNA polymerase  1 55 -
 osa3440   Homologous recombination  1 55 -
 osa3018   RNA degradation  2 112 -

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osa:LOC4330262 (tRNA pseudouridine synthase A) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4330262
osa-r.5
for
4330262
osa-m.8
for
4330262
ath-u.4
for
AT1G20370
ath-u.4
for
AT1G76120
gma-u.4
for
100778978
gma-u.4
for
100811976
sly-u.4
for
101250299
ppo-u.4
for
7490609
ppo-u.4
for
7485628
mtr-u.4
for
11442694
mtr-u.4
for
11440088
1 LOC4328227 myb-binding protein 1A-like protein 4328227 Os02g0135700 6.6 6.7
 6.5
 5.0
 3.2
 3.7
3.2
 3.4
2.8
 3.3
3.2
 3.3
1.7
 4.4
2.8
 1.8
 2.3
2 LOC4325781 pentatricopeptide repeat-containing protein At4g01990, mitochondrial 4325781 Os01g0301000 6.3 6.3
 6.4








3 LOC4335144 pumilio homolog 3 4335144 Os04g0201200 6.0 7.5
 4.5








4 LOC4334285 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like 4334285 OSNPB_030775300 5.8 6.1
 5.6
 3.4
 0.8
 3.6
2.8
 5.1
2.4
 3.1
 2.3
 2.3
 1.8
 2.4
5 LOC9270208 protein RRP6-like 2 9270208 Os10g0437200 5.8 5.7
 5.8
 3.2
2.3
 2.7
1.1
 3.3
2.1
 2.7
2.3
 4.0
 3.9
3.5
 2.8
2.6
 3.1
2.9
 2.5
2.0
6 LOC4352795 p21-activated protein kinase-interacting protein 1-like 4352795 Os12g0615900 5.5 5.0
 6.0
 3.1
 2.8
 6.0
4.9
 3.8
2.6
 5.4
 4.2
 6.0
 -0.3
 -0.6
7 LOC4342742 pentatricopeptide repeat-containing protein At1g80270, mitochondrial 4342742 Os07g0222700 5.5 5.6
 5.3
 3.7
2.5
 2.6
1.7
 6.3
5.9
 6.1
4.6
 5.0
 5.4
5.3
 4.5
3.9
 1.5
0.0
 1.1
0.4
8 LOC4329995 polyribonucleotide nucleotidyltransferase 2, mitochondrial-like 4329995 OSNPB_020617700 5.5 6.5
 4.5
 1.9
 0.6
 4.1
 3.3
 2.8
 4.5
 4.2
 -0.0
 -1.3
9 LOC4333495 U3 snoRNP-associated protein-like YAOH 4333495 OSNPB_030625900 5.4 5.7
 5.0
 5.9
 3.3
 4.7
4.3
 3.8
3.3
 5.7
 4.5
4.0
 4.3
3.7
 0.1
 0.1
10 LOC4332367 mitochondrial substrate carrier family protein B 4332367 Os03g0267700 5.3 4.0
 6.6
 1.1
0.7
 2.5
1.0
 4.4
2.2
 2.4
1.3
 3.8
 2.8
1.5
 3.9
3.1
 0.4
0.0
 0.2
0.2
11 LOC4333869 zinc finger protein VAR3, chloroplastic 4333869 Os03g0708900 5.3 6.0
 4.5
 1.8
 1.0
 2.3
1.8
 3.4
1.5
 3.5
 1.3
 2.1
 0.6
 0.8
12 LOC4343611 elongator complex protein 1 4343611 Os07g0563700 5.3 4.5
 6.0
 3.0
 0.6
 4.9
 2.5
 4.6
 4.8
3.3
 3.0
3.0
 3.6
 2.7
13 LOC4344057 probable protein arginine N-methyltransferase 3 4344057 OSNPB_070640000 5.3 5.8
 4.7
 4.7
 2.2
 9.9
5.3
 3.2
3.1
 5.6
 4.0
 4.2
 0.8
 1.6
14 LOC4334667 pumilio homolog 24 4334667 Os03g0831100 5.2 5.2
 5.3
 4.6
 2.8
 4.5
3.6
 2.6
1.9
 5.7
 5.3
4.1
 4.5
2.3
 0.8
 0.7
15 LOC4338508 importin subunit beta-1 4338508 Os05g0353400 5.2 5.5
 4.9
 2.8
1.7
 1.1
0.6

6.8
 3.3
0.4
 2.5
1.1

16 LOC4325041 DNA repair protein recA homolog 3, mitochondrial 4325041 Os01g0901200 5.2 5.3
 5.0
 2.4
 3.1
 2.9
2.9
 1.3
1.2
 4.9
 2.8
0.8
 2.5
1.7
 1.8
-0.3
 1.5
0.7
17 LOC4341246 50S ribosomal protein L1 4341246 Os06g0546400 5.1 6.3
 4.0
 4.0
 1.9
 3.4
1.2
 2.1
0.3
 4.7
 3.0
 5.9
 0.8
 0.8
18 LOC4331367 uncharacterized LOC4331367 4331367 Os03g0111800 5.1 5.1
 5.1
 1.6
 1.2
 4.5
 3.8
 2.5
 1.9
 2.2
 1.9
 2.0
19 LOC4348938 pentatricopeptide repeat-containing protein At1g61870, mitochondrial 4348938 Os10g0484900 5.0 6.4









20 LOC9272465 multisubstrate pseudouridine synthase 7 9272465 Os05g0509300 5.0 5.7
 4.4
 2.9
 1.1
 1.9
0.2
 2.9
0.6
 5.6
 1.6
 3.3
 0.6
 0.7
21 LOC4343819 ribosome biogenesis protein WDR12 homolog 4343819 Os07g0600400 5.0 4.4
 5.5
 2.5
 0.9
 8.4
5.2
 3.1
3.0
 2.7
 3.5
 3.5
 0.5
 1.6
22 LOC4338742 uncharacterized LOC4338742 4338742 Os05g0403600 5.0 4.9
 5.0
 3.0
0.5
 1.9
1.6
 2.1
2.1
 2.2
2.0
 1.7
 2.9
2.9
 3.9
3.9
 2.7
2.6
 3.3
2.7
23 LOC4339341 periodic tryptophan protein 2 4339341 Os05g0519500 4.9 5.7
 4.1
 2.8
 1.1
 7.7
4.9
 3.7
3.3
 6.1
 7.3
4.1
 3.9
3.6
 0.9
 -0.5
24 LOC4329957 pentatricopeptide repeat-containing protein At1g79540 4329957 Os02g0611400 4.9 5.4
 4.4
 6.6
 1.9
 3.7
1.7
 5.5
4.0
 4.7
 1.9
 3.3
 2.0
 1.7
25 LOC4346843 probable protein arginine N-methyltransferase 1 4346843 OSNPB_090359800 4.9 4.1
 5.7
 3.1
2.4
 2.0
1.4
 4.4
4.0
 2.5
2.1
 6.4
6.1
 2.4
1.7
 2.0
1.2
 -0.8
 -0.6
26 LOC4327779 exportin-2 4327779 Os01g0235400 4.9 5.2
 4.5
 2.6
 0.1
 2.0
1.6
 2.0
1.6
 4.9
 4.2
3.0
 3.4
2.6
 1.9
 1.6
27 LOC4328001 U3 small nucleolar RNA-associated protein 6 homolog 4328001 Os02g0103900 4.8 5.0
 4.7
 8.2
 5.6
 4.7
3.3
 3.3
3.0
 5.5
 5.9
 6.2
 1.2
 2.1
28 LOC4339430 pentatricopeptide repeat-containing protein At3g49240, mitochondrial 4339430 Os05g0534000 4.8 3.5
 6.1

3.6
3.0
 3.5
2.6
 3.8
 4.7
 6.2
 2.0
1.8
 1.8
1.4
29 LOC4352760 WD repeat-containing protein 75 4352760 Os12g0609800 4.8 4.8
 4.8
 2.8
 2.1
 6.7
4.7
 3.0
2.7
 4.1
 2.8
0.4
 3.9
2.2
 1.8
 0.5
30 LOC4346865 zinc finger CCCH domain-containing protein 59-like 4346865 OSNPB_090364000 4.8 5.1
 4.5
 0.7
 1.6
 1.1
-0.6
 1.5
1.2
 1.1
 0.4
 1.7
 3.2
 3.1
31 LOC4338325 proline-, glutamic acid- and leucine-rich protein 1 4338325 Os05g0295900 4.8 4.9
 4.6
 3.1
 2.9
 2.9
2.0
 2.7
1.8
 5.5
 3.3
 3.2
 1.5
0.2
 1.5
0.3
32 LOC9269497 importin-4 9269497 Os03g0261950 4.7 4.9
 4.6
 2.2
 1.3
 2.7
2.6
 1.5
0.5
 4.3
 4.4
3.9
 2.2
1.5
 1.1
 0.9
33 LOC4330356 UPF0160 protein C694.04c 4330356 Os02g0686600 4.7 5.3
 4.2
 2.6
0.5
 1.0
0.5
 6.1
4.7
 3.5
3.2
 3.0
 4.0
 2.8
 0.6
 0.5
34 LOC4338555 pentatricopeptide repeat-containing protein At1g10270 4338555 Os05g0365500 4.7 4.7
 4.8
 3.0
1.9
 2.2
1.2
 4.2
2.9
 3.6
2.8
 3.0
 2.8
2.4
 4.3
2.5
 2.1
 0.4
35 LOC4338564 uncharacterized LOC4338564 4338564 Os05g0367100 4.7 4.6
 4.8
 0.8
 0.8
 2.8
2.3
 3.1
1.7
 3.0
 2.1
 1.2
 1.1
 0.9
36 LOC4345386 putative methyltransferase NSUN6 4345386 Os08g0365900 4.6 3.5
 5.7
 1.5
 0.3
 1.3
 2.3
 2.5
 1.0
 2.0
 1.5
 1.3
37 LOC4351600 nucleolar protein 6 4351600 Os12g0166500 4.6 4.9
 4.4
 3.2
 1.2
 4.3
3.8
 3.2
2.6
 4.7
 4.5
 3.5
 1.8
 1.6
38 LOC9270399 DNA-directed RNA polymerase I subunit 1 9270399 Os06g0612200 4.6 6.2
3.9
 2.2
 5.6
 3.3
 3.2
 4.7
 3.2
 1.8
 0.5
39 LOC4340137 nucleosome assembly protein 1-1 4340137 OSNPB_060149400 4.6 4.4
 4.7
 3.4
3.1
 2.2
1.6
 4.8
4.4
 3.8
3.0
 2.6
1.6
 2.0
2.0
 1.8
1.0
 1.8
0.9
 2.2
0.6
40 LOC4351433 U3 small nucleolar ribonucleoprotein protein MPP10 4351433 Os12g0133900 4.5 4.4
 4.6
 3.7
 2.3
 6.0
4.7
 3.5
1.7
 3.6
 4.4
1.0
 4.7
2.4
 1.6
 1.5
41 LOC4342510 uncharacterized LOC4342510 4342510 Os07g0170300 4.5 5.8
 3.3
 4.6
 3.9


3.9
 3.4
 2.2
 0.0
42 LOC4332841 probable nucleolar protein 5-2 4332841 Os03g0350300 4.5 3.9
 5.2
 3.9
2.9
 1.8
1.7
 11.3
6.9
 2.3
2.3
 6.3
2.4
 5.4
4.2
 5.2
3.9
 0.0
-0.5
 0.4
-1.0
43 LOC4349717 U3 small nucleolar ribonucleoprotein protein MPP10 4349717 Os11g0137100 4.5 5.9
3.7
 2.3
 6.0
4.7
 3.5
1.7
 3.6
 4.4
1.0
 4.7
2.4
 1.6
 1.5
44 LOC4325759 protein OSB3, chloroplastic/mitochondrial 4325759 Os01g0949060 4.5 4.3
 4.7
 2.0
0.7
 1.0
0.4
 0.8
 1.2
 5.2
 0.7
 2.8
 -0.3
 -0.4
45 LOC4340089 protein arginine N-methyltransferase PRMT10-like 4340089 OSNPB_060142800 4.5 4.5
 4.5
 2.0
 1.5
 2.8
2.5
 3.6
2.9
 3.6
 1.6
 2.3
 0.7
 0.6
46 LOC9270402 U3 small nucleolar RNA-associated protein 21 homolog 9270402 Os06g0644600 4.5 6.0
3.1
 2.6
 7.5
6.4
 4.0
2.1
 3.8
 5.4
 5.2
 1.4
 1.3
47 LOC4352769 DEAD-box ATP-dependent RNA helicase 9-like 4352769 OSNPB_120611200 4.5 3.8
 5.2
 2.3
1.9
 0.4
-0.9
 5.7
5.3
 4.5
3.6
 1.9
-0.3
 4.0
3.2
 3.6
2.8
 0.6
0.4
 1.1
0.3
48 LOC4346646 uncharacterized LOC4346646 4346646 Os09g0296400 4.5 4.3
 4.6
 1.7
 0.1
 2.6
 3.0
 -1.3
 3.4
 4.7
 -0.5
 -0.8
49 LOC4330343 uncharacterized LOC4330343 4330343 Os02g0684300 4.5 4.4
 4.5
 3.0
 1.7
 0.4
0.0
 2.7
1.3
 3.7
 1.9
 1.9
 1.7
1.5
 2.5
1.0
50 LOC4343043 uncharacterized LOC4343043 4343043 Os07g0421000 4.4 3.9
 5.0








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