Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4330280   protein indeterminate-domain 4, chloroplastic 
 osa-r.5   4330280   protein indeterminate-domain 4, chloroplastic 
 osa-m.8   4330280   protein indeterminate-domain 4, chloroplastic 
 osa-u.4   9272621   protein indeterminate-domain 5, chloroplastic 
 osa-u.4   4346276   protein indeterminate-domain 6, chloroplastic 
 ath-u.4   AT1G14580   C2H2-like zinc finger protein 
 ath-u.4   IDD4   indeterminate(ID)-domain 4 
 gma-u.4   100818072   protein indeterminate-domain 5, chloroplastic-like 
 gma-u.4   100807789   protein indeterminate-domain 5, chloroplastic 
 gma-u.4   100780268   protein indeterminate-domain 5, chloroplastic 
 ppo-u.4   18101538   protein indeterminate-domain 5, chloroplastic 
 ppo-u.4   18102534   protein indeterminate-domain 5, chloroplastic 
 ppo-u.4   18101539   protein indeterminate-domain 5, chloroplastic 
 mtr-u.4   112422592   protein indeterminate-domain 5, chloroplastic 
 mtr-u.4   25482698   protein indeterminate-domain 5, chloroplastic 
 mtr-u.4   25485591   protein indeterminate-domain 5, chloroplastic 

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Top 50 coexpressed genes to 4330280 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  4 35 6.06
 osa40   Pentose and glucuronate interconversions  2 41 2.47
 osa10   Glycolysis / Gluconeogenesis  1 143 -
 osa1240   Biosynthesis of cofactors  2 248 -
 osa4075   Plant hormone signal transduction  2 262 -

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osa:LOC4330280 (protein indeterminate-domain 4, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4330280
osa-r.5
for
4330280
osa-m.8
for
4330280
osa-u.4
for
9272621
osa-u.4
for
4346276
ath-u.4
for
AT1G14580
ath-u.4
for
IDD4
gma-u.4
for
100818072
gma-u.4
for
100807789
gma-u.4
for
100780268
ppo-u.4
for
18101538
ppo-u.4
for
18102534
ppo-u.4
for
18101539
mtr-u.4
for
112422592
mtr-u.4
for
25482698
mtr-u.4
for
25485591
1 LOC4345576 homeobox-leucine zipper protein HOX5-like 4345576 OSNPB_080416000 4.5 5.7
 3.3
 1.0
 1.6










2 LOC4352523 pentatricopeptide repeat-containing protein At2g31400, chloroplastic 4352523 Os12g0562300 4.3 4.7
 3.9
 -0.0
 2.2
 2.4
 0.6
 0.5
0.3
 1.2
0.9
 0.1
-0.3
 1.4
0.7
 2.1
1.7
 2.1
0.9
 0.3
0.2
 -0.3
-0.8
 -0.1
-0.9
3 LOC4325003 gibberellin 20 oxidase 2-like 4325003 OSNPB_010883800 3.6 3.4
 3.7
 0.3
 1.7

-1.0
 -0.7
 -0.9
 -0.2
 0.3
 0.8
 0.3
-0.2
 0.4
-0.3
 0.9
-0.2
4 LOC4343665 protein TIME FOR COFFEE 4343665 Os07g0571100 3.6 3.6
 3.5
 0.4
 2.8
 0.5
 1.2
 1.8
1.3
 1.9
1.4
 1.7
1.2
 1.4
1.3
 0.9
0.8
 1.2
1.1
 1.6
 1.3
 1.6
5 LOC4342343 amino acid permease 6 4342343 Os07g0134000 3.5 4.0
 3.1
 0.1
 1.1
 2.4
0.5
 1.9
0.3
 0.4
0.0
 0.3
-1.0
 0.1
-0.3
 1.5
 1.7
 0.5
 1.4
-0.3
 1.5
0.3
 0.0
-0.9
6 LOC4339807 uncharacterized LOC4339807 4339807 Os05g0594500 3.5 3.8
 3.1
 0.1
 2.3
 -0.9
 0.3
 1.2
 1.4
 0.5
 0.5
-0.2
 -0.5
-0.7
 2.5
-0.3
 0.9
 1.4
 0.1
7 LOC4340405 polyadenylate-binding protein-interacting protein 7 4340405 Os06g0199200 3.4 5.4
 1.3
 -0.3
-0.4
 1.1
-0.1
 1.3
 0.7
 1.5
1.4
 1.7
1.3
 2.3
2.2
 0.6
0.6
 0.8
0.5
 0.9
0.3
 1.7
 1.2
 1.2
8 LOC4349233 BEL1-like homeodomain protein 4 4349233 Os10g0534900 3.4 4.5
 2.2
 -0.2
 1.2










9 LOC4332623 phytochrome B-like 4332623 OSNPB_030309200 3.3 3.3
 3.3
 -0.4
 0.3
 1.2
-0.1
 0.4
0.2
 1.0
0.5
 1.1
1.0
 2.9
1.6
 1.4
0.4
 -0.0
-0.3
 1.3
1.0
 2.4
 1.3
 2.2
10 LOC4331729 BEL1-like homeodomain protein 7 4331729 Os03g0165300 3.3 3.3
 3.2
 0.9
0.7
 1.8
1.3
 2.1
1.7
 1.6
1.3
 1.0
0.9
 1.8
1.4
 2.6
2.3
 1.0
0.3
 0.1
-0.2
 1.7
1.4
 0.3
-0.2
 0.4
-0.2
 1.1
0.6
11 LOC4341419 aldehyde dehydrogenase family 2 member C4 4341419 Os06g0592400 3.2 3.7
 2.8
 0.7
0.5
 1.1
0.3
 0.7
 1.0
 1.3
0.5
 1.7
0.5
 1.5
0.7
 0.8
 2.6
 -0.4
 1.5
0.5
 0.1
0.0
 1.6
1.5
12 LOC4329738 cryptochrome-1 4329738 Os02g0573200 3.2 3.3
 3.2
 1.4
0.7
 3.8
2.1
 1.9
 3.0
 1.1
1.0
 1.3
0.7
 1.3
1.0
 2.5
1.1
 1.2
1.1
 4.1
1.8
 2.1
 1.7
 1.4
13 LOC4333631 uncharacterized LOC4333631 4333631 Os03g0660700 3.2 2.3
 4.1
 0.3
 1.1










14 LOC4326284 ABC transporter C family member 4 4326284 Os01g0356400 3.2 4.6
1.8
 1.6
 2.0
-0.4
 1.4
-0.9
 0.8
0.3
 0.4
-0.1
 2.1
0.6
 0.0
-0.2
 0.8
0.4
 0.7
-1.2
 0.1
-0.0
 0.4
-0.3
 0.9
0.7
15 LOC4349837 BEL1-like homeodomain protein 1 4349837 Os11g0158832 3.2 2.4
 3.9
 -0.2
 2.0
 -0.4
 1.1
 1.9
1.8
 2.7
2.2
 2.6
2.2
 0.2
-0.2
 0.4
-0.4
 1.5
0.3
 1.4
1.3
 2.0
0.3
 1.1
0.6
16 LOC4347050 uncharacterized LOC4347050 4347050 Os09g0413600 3.1 5.0
 1.3
 -0.4
 0.4
 -0.1
-1.1
 0.4
-1.2
 2.8
1.5
 1.4
0.8
 1.1
0.3
 -0.0
-0.5
 0.3
-0.0
 0.4
0.2
 1.1
0.5
 1.4
0.2
 0.9
0.7
17 LOC4341481 glucan endo-1,3-beta-glucosidase 14 4341481 Os06g0607000 3.1 2.9
 3.3
 0.3
-0.7
 1.4
-0.4
 1.0
-1.0
 0.0
-0.8
 1.4
 1.2
 -0.8
 -0.3
-0.3
 1.0
-0.9
 -0.7
-0.9
 0.4
-0.3
 -0.0
-0.4
 0.1
0.1
18 LOC4331452 homeobox protein BEL1 homolog 4331452 Os03g0124000 3.1 2.9
 3.3
 1.0
 1.3










19 LOC4338714 probable serine/threonine-protein kinase PBL7 4338714 Os05g0398800 3.0 2.3
 3.8
 0.6
 1.7
 3.5
 1.6
 0.4
-0.2
 0.2
-0.4
 0.8
-0.1
 1.2
0.8
 1.2
0.8
 1.5
0.5
 0.0
 0.6
 0.4
20 LOC4330297 homeobox-leucine zipper protein ROC5-like 4330297 OSNPB_020674800 3.0 3.0
 3.1
 1.4
1.2
 2.3
1.4
 1.8
0.3
 2.5
1.9
 1.7
1.2
 2.8
1.9
 2.0
1.8
 2.0
1.5
 2.3
2.2
 1.4
0.6
 0.9
0.6
 1.1
0.9
 0.7
0.5
21 LOC4339090 aldose reductase 4339090 Os05g0474600 3.0 1.7
 4.2
 -0.7
 -0.2
 -0.3
 0.9
 -0.1
 -1.2
 -0.2





22 LOC4340002 probable aminotransferase ACS12 4340002 Os06g0130400 3.0 4.5
 1.4
 1.2
 1.2
 1.3
0.1
 2.2
1.2
 1.1
0.9
 1.4
1.4
 1.7
1.4
 1.0
-0.1
 1.9
0.2
 1.5
1.2
 1.2
-0.2
 2.8
0.2
 1.2
0.8
23 LOC4351990 pentatricopeptide repeat-containing protein At3g46610 4351990 Os12g0283900 2.9 3.9
 2.0
 0.4
 1.0
 0.2
 1.4
 1.1
0.7
 2.5
1.3
 0.3
0.1
 -0.1
 -0.6
 1.2
 1.2
 1.2
 0.9
24 LOC4330982 protein TIC 55, chloroplastic 4330982 Os02g0792800 2.9 2.8
 3.0
 0.5
 2.1
 0.2
 0.1
 1.9
0.4
 1.0
-0.1
 0.0
-0.5
 0.3
-0.4
 0.6
0.5
 1.7
1.6
 1.5
 1.0
 0.8
25 LOC4349598 probable serine/threonine-protein kinase WNK7 4349598 OSNPB_110114600 2.9 1.8
 4.0
 1.5
1.2
 1.7
1.0
 -0.6
-1.0
 0.2
-0.6
 0.6
-0.0
 0.7
0.3
 0.6
0.4
 -1.2
-1.2
 -0.7
-1.2
 -0.1
-0.8
 3.3
1.6
 2.4
1.2
 0.9
0.4
26 LOC4327916 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like 4327916 Os01g0286100 2.9 2.8
 2.9
 -0.6
 -0.6










27 LOC4334716 G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 4334716 Os03g0838100 2.9 3.0
 2.7
 1.6
 1.9
 0.3
 0.7
 -0.5
 -0.0
 1.1
 1.8
0.9
 0.6
0.0
 0.4
-0.1
 1.4
 -0.3
 1.1
28 LOC4330816 cyclin-dependent kinase inhibitor 1-like 4330816 OSNPB_020762400 2.9 2.4
 3.3
 -0.2
 0.8










29 LOC4332159 U-box domain-containing protein 75-like 4332159 Os03g0232600 2.8 3.1
 2.6
 2.1
 2.6
 -0.7
-1.0
 -0.5
-1.8
 0.0
-0.4
 0.5
0.0
 0.6
0.3
 0.9
0.3
 0.3
-0.2
 0.3
-0.2
 0.7
-1.1
 -0.2
-2.0
 1.1
-0.6
30 LOC4347098 aspartyl protease family protein At5g10770 4347098 Os09g0423500 2.8 2.7
 3.0
 0.5
0.4
 1.4
0.9
 1.2
 3.0
 0.7
0.3
 1.1
0.9
 0.3
0.0
 1.0
0.6
 0.9
0.7
 0.9
0.6
 2.2
 0.9
 1.1
31 LOC4333860 DELLA protein SLR1-like 4333860 OSNPB_030707600 2.8 3.6
 2.0
 0.5
 1.5
 1.0
0.9
 2.4
1.2
 1.5
1.2
 2.5
1.3
 3.7
2.9
 2.6
1.5
 0.6
0.5
 2.8
2.6
 0.4
0.3
 3.0
-0.1
 3.8
0.6
32 LOC4345994 probable lipoxygenase 8, chloroplastic 4345994 OSNPB_080509100 2.8 3.2
 2.3
 0.7
0.5
 0.9
0.8
 0.9
 0.1
 2.4
2.0
 3.5
1.9
 1.7
1.5
 1.5
0.7
 1.6
1.3
 1.3
1.1
 0.5
-0.1
 0.7
0.2
 0.3
0.1
33 LOC4350032 transcriptional corepressor SEUSS 4350032 Os11g0207100 2.8 1.9
 3.7
 0.8
0.6
 1.5
1.0
 0.2
 1.9
 2.1
1.7
 2.1
1.4
 3.5
2.8
 0.8
0.7
 0.3
0.2
 1.0
0.9
 1.1
0.9
 1.2
1.0
 2.3
2.1
34 LOC4336008 cryptochrome-1 4336008 Os04g0452100 2.7 3.8
 1.7
 1.4
0.7
 3.8
2.1
 1.9
 3.0
 1.1
1.0
 1.3
0.7
 1.3
1.0
 2.5
1.1
 1.2
1.1
 4.1
1.8
 2.1
 1.7
 1.4
35 LOC4352791 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like 4352791 OSNPB_120615400 2.7 2.9
 2.6












36 LOC4347635 homeobox-leucine zipper protein ROC6-like 4347635 Os09g0526200 2.7 3.5
 2.0
 1.4
1.2
 2.3
1.4
 1.8
0.3
 2.5
1.9
 1.7
1.2
 2.8
1.9
 2.0
1.8
 2.0
1.5
 2.3
2.2
 1.4
0.6
 0.9
0.6
 1.1
0.9
 0.7
0.5
37 LOC4346800 probable LRR receptor-like serine/threonine-protein kinase At1g07650 4346800 Os09g0345300 2.7 3.5
 2.0
 0.5
 0.5
 1.5
 1.8
 3.7
1.6
 2.7
1.0
 0.3
-0.5
 0.8
 1.5
 -0.0
 2.5
 1.4
 0.1
38 LOC9266530 sucrose transport protein SUT2-like 9266530 OSNPB_120641400 2.7 3.6
 1.8
 0.8
 0.5
 -0.3
 -1.0
 -1.2
-1.3
 -0.4
-1.4
 0.2
-0.3
 -0.3
 0.7
 0.6
 0.7
-0.2
 -0.6
-0.6
 1.2
0.4
39 LOC4327285 pectinesterase 4327285 Os01g0312500 2.7 2.6
 2.8
 -0.4
-0.7
 0.1
-0.2
 0.6
-0.2
 0.6
0.0
 -0.6
-0.7
 -0.6
-1.1
 1.1
-0.5
 0.4
0.1
 1.3
1.1
 0.1
-0.0
 1.5
0.7
 0.5
-0.6
 1.4
-0.2
40 LOC4328528 uncharacterized LOC4328528 4328528 Os02g0184500 2.7 3.2
 2.3
 0.8
0.7
 0.3
-0.2
 0.1
-0.4
 0.9
0.8
 0.5
0.3
 0.4
0.0
 0.5
-0.1
 -0.0
-0.3
 0.5
-1.0
 0.4
-0.3
 0.3
0.3
 0.4
0.3
 0.1
-0.6
41 LOC4331378 trihelix transcription factor GTL1 4331378 Os03g0113500 2.7 3.3
 2.1
 1.4
0.6
 1.0
0.6
 -0.4
 1.7
 4.1
2.8
 3.2
3.1
 4.2
2.5
 2.4
1.5
 1.0
0.8
 1.8
1.7
 3.1
2.8
 3.3
1.7
 3.1
2.9
42 LOC4334142 uncharacterized LOC4334142 4334142 Os03g0753500 2.7 4.0
 1.4
 1.1
1.1
 2.4
1.7










43 LOC4328005 trihelix transcription factor GTL1 4328005 Os02g0104500 2.7 2.3
 3.1
 0.2
 -0.4
 -1.2
 0.8
 -0.7
-0.9
 -0.6
-0.8
 1.4
0.7
 0.5
-0.1
 -0.8
-1.2
 0.1
-1.3
 -1.6
 -0.5
 -0.8
44 LOC4326363 probable transcription factor GLK2 4326363 OSNPB_010239000 2.7 1.2
 4.2
 1.7
1.6
 3.0
1.6
 3.2
2.9
 4.2
4.1
 1.8
1.6
 3.2
1.9
 2.4
2.1
 0.8
0.7
 1.5
1.4
 1.4
1.1
 1.4
0.9
 2.2
0.2
 0.9
-0.5
45 LOC4343046 protein TSS 4343046 Os07g0422000 2.7 2.4
 2.9
 -0.4
 0.9
 0.5
 1.4
 2.1
0.7
 2.5
0.8
 1.1
0.2
 1.1
0.2
 0.7
-1.6
 1.0
0.4
 0.3
 2.0
 3.0
46 LOC4329169 uncharacterized LOC4329169 4329169 Os02g0321600 2.7 1.5
 3.8
 0.1
 0.8
 1.7
 1.0
 1.0
 1.0
 1.3





47 LOC4342825 probable polygalacturonase 4342825 Os07g0245200 2.7 2.2
 3.1
 0.2
-0.1
 0.4
-0.4
 0.4
 -1.0
 0.7
-0.0
 1.6
0.4
 1.2
0.5
 0.1
0.0
 -0.0
-0.5
 0.1
-0.5
 0.8
0.6
 1.9
1.4
 3.2
1.3
48 LOC4332089 50S ribosomal protein L15, chloroplastic 4332089 Os03g0219900 2.7 2.6
 2.7
 -0.6
 -0.0
 -1.1
 -0.2
 -0.2
 -0.1
 0.4
 0.4
-0.1
 0.1
-0.7
 1.1
0.0
 -0.1
 0.5
 -0.9
49 LOC4344192 4-alpha-glucanotransferase DPE2-like 4344192 OSNPB_070662900 2.6 3.7
 1.6
 -1.2
 0.4
 1.1
 -1.0
 0.6
0.6
 0.7
-0.2
 -0.1
-0.2
 0.2
-0.4
 0.1
-0.0
 0.3
0.1
 1.7
 2.2
 2.0
50 LOC4331999 BTB/POZ domain-containing protein SR1IP1 4331999 Os03g0206700 2.6 2.6
 2.6
 1.1
 2.9
 0.2
 1.5
 1.0
0.5
 0.5
0.2
 1.2
0.4
 1.3
 0.9
 1.7
 1.2
0.4
 1.2
0.8
 1.1
0.3
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