Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4330860   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 osa-r.5   4330860   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 osa-m.8   4330860   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 ath-u.4   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100792726   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 sly-u.4   101256843   pentatricopeptide repeat-containing protein 
 ppo-u.4   7478495   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 mtr-u.4   112419508   pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like 
 mtr-u.4   11409652   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 

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Top 50 coexpressed genes to 4330860 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1210   2-Oxocarboxylic acid metabolism  2 53 2.25
 osa220   Arginine biosynthesis  1 36 -
 osa260   Glycine, serine and threonine metabolism  1 67 -
 osa1230   Biosynthesis of amino acids  3 234 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4330860 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4330860
osa-r.5
for
4330860
osa-m.8
for
4330860
ath-u.4
for
PDE247
gma-u.4
for
100792726
sly-u.4
for
101256843
ppo-u.4
for
7478495
mtr-u.4
for
112419508
mtr-u.4
for
11409652
1 LOC4334236 pentatricopeptide repeat-containing protein At5g46460, mitochondrial 4334236 Os03g0767700 4.5 4.1
 4.8
 -0.4




2 LOC4327605 putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial 4327605 Os01g0819800 4.3 3.1
 5.6
 9.4
 3.0
 3.3
1.7
 1.0
3 LOC4342822 pentatricopeptide repeat-containing protein At4g18520, chloroplastic 4342822 Os07g0244400 3.9 2.9
 5.0
 5.6
 7.2
 4.7
1.1
 1.4
4 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 3.9 4.0
 3.7
 -0.6
 3.7
2.5
 1.1
 1.7
 0.3
 0.5
5 LOC4336084 uncharacterized LOC4336084 4336084 Os04g0464600 3.9 3.2
 4.5
 2.9
 4.6
3.2
 -1.7
 0.5
 1.7
 3.1
6 LOC4347825 uncharacterized protein At2g39795, mitochondrial 4347825 Os09g0557400 3.8 4.1
 3.6
 1.9
1.8
 3.7
2.0
 2.8
2.7
 2.6
1.2
 -0.0
-0.3
 -0.3
-0.9
7 LOC4325580 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 4325580 Os01g0715900 3.7 3.1
 4.3





8 LOC4351951 oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 4351951 Os12g0270100 3.4 4.0
 2.7
 5.0
 6.5
 4.7
 5.9
 -0.3
 -0.5
9 LOC4332866 probable diphthine methyl ester synthase 4332866 Os03g0355800 3.3 3.1
 3.6
 1.6
 2.2
0.3
 0.6
 2.2
 -0.3
 -0.4
10 LOC4344238 pentatricopeptide repeat-containing protein At4g32430, mitochondrial 4344238 Os07g0670000 3.3 2.4
 4.3
 4.5
4.6
1.1
 0.5
11 LOC4352058 serine hydroxymethyltransferase 4 4352058 Os12g0409000 3.3 2.7
 3.9
 -0.2
-1.7
 -0.1
-0.4
 -0.3
-1.2
 0.8
-0.4
 0.7
0.1
 -0.2
-0.5
12 LOC4334352 protein WHAT'S THIS FACTOR 1 4334352 Os03g0786600 3.3 3.6
 3.0
 0.5
 1.1
0.1
 1.3
2.0
 2.4
13 LOC4336289 uncharacterized LOC4336289 4336289 Os04g0497900 3.3 2.6
 4.0
 4.0
 3.3
 3.1
 2.9
 4.3
 4.7
14 LOC4330260 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 4330260 Os02g0668100 3.2 3.9
 2.6
 -0.7
 3.1
 0.7
 1.1
 1.6
 2.0
15 LOC4334836 pentatricopeptide repeat-containing protein At5g46580, chloroplastic 4334836 Os03g0856100 3.2 3.5
 2.9
 1.7
 4.5
4.4
 3.2
 3.0
 1.4
 2.4
16 LOC4332063 pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like 4332063 Os03g0215900 3.2 4.1
1.3
 7.4
6.9
 2.2
1.5
 4.2
2.2
 2.5
0.9
 2.6
1.3
17 LOC4338741 uncharacterized LOC4338741 4338741 Os05g0403400 3.1 3.3
 3.0
 2.2
0.6
 3.2
3.1
 -1.0
 3.2
2.7
 2.7
2.7
 3.2
3.1
18 LOC4336590 acetylglutamate kinase 4336590 Os04g0550500 3.1 1.9
 4.3
 0.2
 3.0
2.0
 0.0
 2.2
1.6
 2.3
 1.9
19 LOC4329382 uncharacterized LOC4329382 4329382 Os02g0489500 3.1 3.6
 2.6
 1.7
 2.2
 0.8
 3.2
 0.9
 0.7
20 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 3.1 3.2
 2.9
 0.5
 1.4
 1.3
 1.3
 1.7
 2.4
21 LOC4335133 transcription factor PCF1-like 4335133 OSNPB_040194600 3.1 3.8
 2.3
-0.9
-0.9
 0.6
 0.4
 0.4
 -0.4
22 LOC4332127 uncharacterized LOC4332127 4332127 Os03g0226700 3.0 2.3
 3.7
 -0.1
 2.7
2.5
 -0.6
 1.1
 0.5
 1.4
23 LOC4326545 probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial 4326545 Os01g0742300 3.0 4.1
-0.6
 0.2
-1.1
 0.7
 -0.5
 3.1
 3.7
24 LOC4330705 methyltransferase-like protein 7A 4330705 Os02g0744100 3.0 1.9
 4.1
 -0.5
-1.1
 1.5
 0.5
 1.5
 -1.0
 -1.6
25 LOC4336112 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4336112 Os04g0469400 3.0 1.7
 4.3
 3.2
 5.3
 3.4
0.1
 0.5
26 LOC4331123 glutathionyl-hydroquinone reductase YqjG 4331123 Os02g0814800 3.0 2.5
 3.5
 0.4
 1.6
 0.3
 1.8
 0.3
 0.4
27 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 2.9 2.9
 3.0
 1.2
 1.1
0.9
 2.0
 1.5
 1.0
 1.4
28 LOC4337804 pentatricopeptide repeat-containing protein At3g05340 4337804 Os05g0147600 2.9 2.6
 3.3
 4.5
 5.2
 4.0
 2.0
 0.2
 -0.5
29 LOC4347529 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 4347529 Os09g0509000 2.9 3.1
 2.7
 2.3
 3.5
3.3
 3.7
2.0
 4.0
1.7
 1.6
0.5
 0.6
-0.1
30 LOC4327891 uncharacterized LOC4327891 4327891 Os01g0776300 2.9 2.8
 3.0





31 LOC4348962 putative pentatricopeptide repeat-containing protein At5g52630 4348962 Os10g0488900 2.9 2.4
 3.3





32 LOC4331726 probable fructokinase-4 4331726 Os03g0164700 2.9 3.4
 2.4
 3.0
 2.1
0.3
 0.9
 2.1
1.4
 1.7
 2.0
33 LOC112936043 ribosomal RNA small subunit methyltransferase G-like 112936043 2.9 4.1
1.4
 3.5
 3.1
0.7
 -0.4
34 LOC4334612 dnaJ homolog subfamily B member 5 4334612 Os03g0822800 2.9 2.0
 3.7
 -0.2
 1.3
0.1
 -0.5
 0.0
 0.9
 1.2
35 LOC4339738 serine carboxypeptidase-like 50 4339738 Os05g0582800 2.9 4.1
 1.6
1.2
0.9
 2.3
0.9
 1.1
0.8
 2.3
0.5
 3.4
0.7
36 LOC4351219 scarecrow-like protein 14 4351219 Os11g0705900 2.9 2.6
 3.1





37 LOC4337151 uncharacterized LOC4337151 4337151 Os04g0637500 2.9 2.4
 3.3





38 LOC4341611 protein TIC 21, chloroplastic 4341611 Os06g0638100 2.9 3.7
 2.0
 -0.4
 1.8
1.4
 2.1
 0.7
0.5
 1.1
 1.0
39 LOC4339896 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 4339896 Os06g0112000 2.8 1.3
 4.3
 5.6
 6.8
2.8
 4.4
 4.4
 2.0
0.2
 1.5
0.0
40 LOC4333992 ribosomal RNA small subunit methyltransferase E 4333992 Os03g0729700 2.8 1.9
 3.8
 2.9
 0.8
 1.7
 2.6
 0.2
 -0.7
41 LOC4352436 riboflavin synthase 4352436 Os12g0541000 2.8 3.6
1.4
 2.8
 1.8
 1.8
1.7
 2.1
0.6
 2.2
0.4
42 LOC4347930 pentatricopeptide repeat-containing protein At3g62890 4347930 Os09g0573000 2.8 2.8
 2.9





43 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 2.8 2.7
 2.9





44 LOC4330192 3-isopropylmalate dehydratase small subunit 3 4330192 Os02g0655300 2.8 2.4
 3.1
 0.5
0.1
 2.1
1.1
 0.4
 0.3
 1.1
 0.8
45 LOC4330466 zinc-finger homeodomain protein 7 4330466 OSNPB_020706600 2.8 3.3






46 LOC4328126 pentatricopeptide repeat-containing protein At1g02060, chloroplastic 4328126 Os02g0121900 2.8 2.1
 3.4
 5.6
1.5
 3.4
 1.9
 1.9
47 LOC4327943 ubiquitin carboxyl-terminal hydrolase 51 4327943 Os01g0689000 2.7 2.2
 3.3





48 LOC4347017 pentatricopeptide repeat-containing protein At4g02750 4347017 Os09g0407800 2.7 3.4

5.4
 3.6
1.4
 1.1
49 LOC4345435 thioredoxin-like protein CITRX, chloroplastic 4345435 OSNPB_080378900

1.8
 4.8
3.8
 3.1
 2.8
 0.2
-0.6
 0.2
-0.7
50 LOC4345651 uncharacterized LOC4345651 4345651 Os08g0433300







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