Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4331249   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 osa-r.5   4331249   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 osa-m.8   4331249   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 osa-u.4   9270448   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 ath-u.4   AT3G19810   BTB/POZ domain protein, putative (DUF177) 
 gma-u.4   100792185   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 sly-u.4   101255042   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 ppo-u.4   7481592   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 
 mtr-u.4   11406154   large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 

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Top 50 coexpressed genes to 4331249 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  16 336 17.24
 osa860   Porphyrin metabolism  2 42 2.45
 osa195   Photosynthesis  1 77 -
 osa480   Glutathione metabolism  1 114 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4331249 (large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4331249
osa-r.5
for
4331249
osa-m.8
for
4331249
osa-u.4
for
9270448
ath-u.4
for
AT3G19810
gma-u.4
for
100792185
sly-u.4
for
101255042
ppo-u.4
for
7481592
mtr-u.4
for
11406154
1 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 7.1 7.4
 6.8
 1.8
 5.5
3.2
 4.1
3.0
 1.5
 0.9
 2.0
2 LOC4330964 uncharacterized LOC4330964 4330964 Os02g0788500 6.4 6.5
 6.4
 1.0
0.4
 6.6
 2.5
2.4
 2.9
 1.8
1.6
 2.4
3 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 6.3 5.8
 6.8
 2.2
 8.1
 5.0
4.3
2.0
 2.5
4 LOC4324908 rhodanese-like domain-containing protein 4A, chloroplastic 4324908 Os01g0889800 6.3 6.8
 5.8
 1.0
 5.2
 5.9
3.5
 4.1
 1.7
 3.2
5 LOC4330740 pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like 4330740 OSNPB_020750400 6.3 6.1
 6.4
 2.7
 5.9
 4.4
-0.9
 2.8
 3.0
 3.8
6 LOC4331942 30S ribosomal protein S10, chloroplastic 4331942 Os03g0196800 6.2 6.7
 5.7
 3.4




7 LOC4331535 glutathione S-transferase F11 4331535 Os03g0135300 6.0 5.9
 6.1
 3.1
 0.4
-0.1
 1.4
0.8
 2.3
1.5
 0.6
0.4
 2.0
-0.4
8 LOC4334749 30S ribosomal protein S6 alpha, chloroplastic 4334749 Os03g0843400 6.0 6.8
 5.2
 2.1
 4.3
 6.0
5.2
 3.7
 1.3
 3.0
9 LOC4352538 psbP domain-containing protein 1, chloroplastic 4352538 Os12g0564400 6.0 5.3
 6.6
 2.7
2.1
 1.9
 2.6
 4.1
 1.4
0.4
 1.1
10 LOC4334651 50S ribosomal protein L18, chloroplastic-like 4334651 OSNPB_030828100 5.9 6.3
 5.5
 2.4
 3.7
 3.8
 1.1
 1.7
1.2
 2.0
11 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 5.8 7.1
 4.5
 3.5
 4.8
 6.6
3.0
 2.4
 1.9
 1.2
-0.0
12 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 5.8 5.9
 5.6
 1.7
 4.5
 5.6
 2.1
 1.9
1.9
 0.4
13 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 5.7 6.5
 5.0
 2.6
 3.7
 6.4
5.6
 2.7
 1.9
 2.5
14 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 5.7 5.5
 5.9
 2.8
 5.8
 3.7
 3.0
 0.5
 3.4
15 LOC4326401 probable dual-specificity RNA methyltransferase RlmN 4326401 Os01g0973400 5.7 4.7
 6.7
 2.3
 6.4
 4.3
2.6
 4.6
 2.5
 4.1
16 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 5.7 7.2
 4.2
 1.3
 4.5
 3.4
3.3
 3.2
 1.5
 2.5
17 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 5.7 6.2
 5.1
 2.1
 4.0
 3.1
 2.7
 1.4
 3.2
18 LOC4334100 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic 4334100 Os03g0747700 5.6 6.3
 4.9
 1.2
 2.7
 2.7
1.4
 1.1
 0.6
 3.5
19 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 5.6 7.2
 3.9
 2.7
 3.5
 3.9
3.5
 3.5
 1.8
0.0
 2.3
20 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 5.5 6.3
 4.8
 2.5
 4.6
 5.6
4.9
 4.2
 2.4
1.4
 1.8
21 LOC4340929 uncharacterized LOC4340929 4340929 Os06g0332800 5.5 5.7
 5.3
 2.0
 3.9
 3.6
3.5
 4.2
 1.1
0.8
 1.7
22 LOC4346938 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic 4346938 OSNPB_090382400 5.5 4.7
 6.3
 1.8
 6.2
 6.6
 1.1
 2.1
 2.1
23 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 5.4 7.0
 3.7
 2.1
0.4
 4.6
 3.8
2.7
 3.2
 1.0
 2.5
24 LOC4345435 thioredoxin-like protein CITRX, chloroplastic 4345435 OSNPB_080378900 5.3 4.9
 5.7
 2.7
 6.2
 4.3
2.3
 1.3
 1.9
 0.5
0.4
25 LOC4331815 ylmG homolog protein 2, chloroplastic 4331815 Os03g0178200 5.2 5.1
 5.3
 2.5
 1.7
 3.1
2.7
 1.0
 0.8
 1.5
26 wgl2 white green leaf2 4334247 Os03g0769100 5.2 6.0
 4.5
 1.9
 4.1
 6.5
5.9
 4.8
 1.6
1.4
 2.0
27 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 5.2 6.5
 3.9
 0.9
0.6
 3.2
2.8
 2.9
2.8
 1.9
1.4
 1.3
1.0
 2.3
1.8
28 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 5.2 4.9
 5.4
 2.1
 4.8
 3.6
2.9
 3.4
 2.2
 1.6
29 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 5.1 5.1
 5.2
 1.7
1.4
 3.5
3.1
 3.4
2.7
 2.4
2.1
 3.0
0.8
 4.0
30 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 5.1 5.0
 5.2
 2.7
 5.8
 2.9
2.9
 4.8
 1.5
 1.6
31 LOC4324472 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4324472 Os01g0966200 5.1 5.2
 5.0
 2.8
 1.6
 4.4
2.9
 1.6
 0.5
 1.5
32 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 5.0 4.2
 5.9
 2.9
 4.2
 4.0
2.9
 4.1
 1.2
1.0
 3.8
1.7
33 LOC4327541 50S ribosomal protein L34, chloroplastic 4327541 Os01g0805000 5.0 6.0
 4.1
 2.7
 1.4
 5.6
4.6
 2.0
 1.1
 1.5
34 LOC4332466 50S ribosomal protein L10, chloroplastic 4332466 Os03g0284400 5.0 6.1
 3.9
 2.8
 2.1
 4.7
 4.4
 1.7
1.3
 2.7
35 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 5.0 5.3
 4.7
 2.5
 2.8
 4.2
3.8
 1.7
 1.1
 1.0
36 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 5.0 4.1
 5.8
 1.9
 4.8
 2.9
2.4
 3.8
 0.6
0.2
 2.0
37 LOC4325168 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 4325168 Os01g0271400 5.0 4.5
 5.4
 3.9
 5.1
 4.2
2.4
 4.1
 1.7
 2.0
38 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 4.9 5.1
 4.8
 3.3




39 LOC4324026 protein FLUORESCENT IN BLUE LIGHT, chloroplastic 4324026 Os01g0510600 4.9 5.2
 4.7
 2.4
0.9
 8.8
 4.0
2.7
 3.7
3.2
 1.2
 2.2
40 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 4.9 5.0
 4.9
 2.5
 5.2
 3.5
 1.0
 2.2
 0.8
41 LOC4324275 50S ribosomal protein 5, chloroplastic 4324275 Os01g0278900 4.9 7.3
 2.5
 1.5




42 LOC4333624 ferredoxin C 1, chloroplastic 4333624 Os03g0659200 4.8 4.2
 5.4
 2.2
3.6
1.0
 1.4
 1.5
-1.2
 2.8
43 LOC4349098 uncharacterized LOC4349098 4349098 Os10g0512500 4.8 5.1
 4.5
 2.8
 6.5
 7.0
 2.1
 2.5
 4.2
44 LOC4332348 50S ribosomal protein L4, chloroplastic 4332348 Os03g0265400 4.8 6.5
 3.1
 2.2
 3.7
 4.6
3.8
 3.5
 1.3
 3.2
45 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 4.8 4.8
 4.8
 4.1
1.0
 5.7
 4.0
2.2
 1.3
 0.7
0.3
 2.4
46 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 4.8 4.3
 5.3
 2.3
 7.1
 4.3
1.5
2.0
 2.7
47 LOC4334555 50S ribosomal protein L17, chloroplastic 4334555 Os03g0815400 4.8 6.6
 3.0
 1.6
 3.2
 4.3
4.2
 2.9
2.5
 1.7
1.4
 2.3
48 LOC4337539 photosynthetic NDH subunit of lumenal location 5, chloroplastic 4337539 Os05g0103200 4.8 5.2
 4.4
 1.5
 2.8
 3.1
2.8
 5.0
 1.9
0.7
 2.4
49 LOC4337526 50S ribosomal protein L28, chloroplastic 4337526 Os05g0101400 4.8 4.9
 4.6
 2.6
 4.0
 3.3
 2.7
 1.8
 2.5
50 LOC4349608 elongation factor P 4349608 Os11g0116400 4.8 5.4
 4.2
 1.6
1.4
 6.6
 3.5
3.1
 1.8
 1.0
 1.0
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