Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4331425   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 osa-r.5   4331425   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 gma-u.4   100777584   pentatricopeptide repeat-containing protein At1g09900 
 sly-u.4   101245075   pentatricopeptide repeat-containing protein 
 ppo-u.4   7455264   pentatricopeptide repeat-containing protein At1g05670, mitochondrial 
 mtr-u.4   25495583   pentatricopeptide repeat-containing protein At1g09900 

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Top 50 coexpressed genes to 4331425 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa220   Arginine biosynthesis  1 36 -
 osa53   Ascorbate and aldarate metabolism  1 64 -
 osa260   Glycine, serine and threonine metabolism  1 67 -
 osa630   Glyoxylate and dicarboxylate metabolism  1 76 -
 osa520   Amino sugar and nucleotide sugar metabolism  1 162 -

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osa:LOC4331425 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4331425
osa-r.5
for
4331425
gma-u.4
for
100777584
sly-u.4
for
101245075
ppo-u.4
for
7455264
mtr-u.4
for
25495583
1 LOC4344238 pentatricopeptide repeat-containing protein At4g32430, mitochondrial 4344238 Os07g0670000 3.0 4.4
-0.5
0.2
2 LOC107280628 pentatricopeptide repeat-containing protein At2g13600-like 107280628 2.7 3.9
 0.9
 -0.2
0.9
3 LOC4334929 pentatricopeptide repeat-containing protein At3g29230 4334929 Os04g0110500 2.5 3.5



4 LOC4327350 uncharacterized LOC4327350 4327350 Os01g0810200 2.5 3.5
 -0.3
 0.7
 0.4
 0.3
5 LOC4324326 pentatricopeptide repeat-containing protein At1g05600 4324326 Os01g0913800 2.5 3.6
 4.3
 0.8
 0.2
 1.7
-0.2
6 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 2.5 3.6
 1.7
1.5
 0.6
0.5
 1.5
0.9
 0.6
0.6
7 LOC4326393 probable E3 ubiquitin-protein ligase RHC2A 4326393 Os01g0972000 2.5 3.5
 -0.1
-0.3
 -1.0
-1.4
 0.5
0.3
 1.0
-0.5
8 LOC4344412 branchpoint-bridging protein 4344412 Os08g0100700 2.4 3.7
 1.6
1.4
 1.3
 0.9
0.2
 0.4
9 LOC4335906 protein disulfide isomerase-like 1-2 4335906 OSNPB_040436300 2.4 3.4
 0.2
-0.2
 0.0
-0.8
 -1.2
 -0.3
10 LOC4339492 uncharacterized LOC4339492 4339492 Os05g0543800 2.4 3.2



11 LOC4328898 probable inactive dual specificity protein phosphatase-like At4g18593 4328898 Os02g0251700 2.3 3.5
 1.3
 1.1
 -0.3
 -0.1
12 LOC4349066 SET and MYND domain-containing protein 4 4349066 Os10g0506800 2.3 3.7
 2.4
1.9
 3.1
 0.6
 1.6
13 LOC4329306 uncharacterized LOC4329306 4329306 Os02g0462401 2.3 3.4
 0.2
0.2
 0.4
14 LOC9269859 uncharacterized LOC9269859 9269859 2.3 3.2



15 LOC4328786 pentatricopeptide repeat-containing protein At1g51965, mitochondrial 4328786 2.3 2.9
 -0.5
 0.4
 1.0
 1.2
16 LOC4350307 uncharacterized LOC4350307 4350307 2.3 4.1



17 LOC4341516 glycine dehydrogenase (decarboxylating), mitochondrial 4341516 Os06g0611900 2.3 3.5
 1.3
0.6
 0.4
 -0.6
 -0.8
18 LOC4339850 probable methyltransferase PMT17 4339850 Os06g0103900 2.2 3.2
0.2
 0.5
-1.4
19 LOC4339886 eyes absent homolog 4339886 Os06g0110100 2.2 2.8
 0.2
-0.6
 0.8
 0.5
 0.6
20 LOC4327820 cinnamoyl-CoA reductase 1-like 4327820 Os01g0978400 2.2 3.0
 -0.1
 -1.2
 -0.8
 1.8
21 LOC9269748 pentatricopeptide repeat-containing protein At4g18520, chloroplastic 9269748 Os03g0644200 2.2 2.7
 1.9
 0.5
 -0.7
 0.3
22 LOC4346297 putative low molecular weight protein-tyrosine-phosphatase slr0328 4346297 Os08g0557400 2.2 3.1
 -0.1
-0.2
 0.2
 0.4
-0.5
 0.5
23 LOC4351907 pentatricopeptide repeat-containing protein At5g27110 4351907 Os12g0256900 2.1 2.7
 2.8
 1.8

24 LOC4327612 protein FATTY ACID EXPORT 3, chloroplastic 4327612 Os01g0821700 2.1 3.1
 2.1
1.6
 1.0
 -0.0
-0.1
 0.5
25 LOC9268747 uncharacterized LOC9268747 9268747 2.1 3.1



26 LOC4336587 ethylene-responsive transcription factor ERF038 4336587 Os04g0550200 2.1 3.0
 0.9
0.7
 0.5
-0.1
 1.0
-0.2
 0.7
0.1
27 LOC4346359 uncharacterized LOC4346359 4346359 Os08g0566700 2.1 3.0



28 LOC9268876 uncharacterized LOC9268876 9268876 2.1 3.0



29 LOC4351467 E3 ubiquitin-protein ligase RING1 4351467 Os12g0140600 2.1 2.8



30 LOC4346132 uncharacterized protein YciO 4346132 Os08g0531300 2.0 3.1
 1.1
 0.5
 0.2
 0.3
31 LOC4343226 serine carboxypeptidase-like 4343226 OSNPB_070479300 2.0 2.6
 -0.0
-0.3
 0.9
0.2
 -0.2
-0.7
 0.6
0.5
32 LOC4351571 uncharacterized LOC4351571 4351571 Os12g0161800 2.0 3.0
 1.7
0.5
 0.9
0.6
 2.3
-0.8
 1.1
0.6
33 LOC4349511 CSC1-like protein At1g32090 4349511 Os10g0579100 2.0 2.9
 0.5
-0.3
 1.1
 0.4
0.3
 -0.6
34 LOC9269531 uncharacterized LOC9269531 9269531 2.0 2.9



35 LOC4331537 ankyrin repeat domain-containing protein, chloroplastic 4331537 Os03g0135600 2.0 3.0
 1.1
0.9
 1.3
 -0.1
-1.0
 2.0
1.3
36 LOC4345448 double-stranded RNA-binding protein 4-like 4345448 OSNPB_080384100 2.0 2.5
 1.2
0.1
 -0.1
 0.9
 0.8
-0.2
37 LOC4349782 2-carboxy-D-arabinitol-1-phosphatase 4349782 Os11g0150100 2.0 2.7
 -0.1
-0.4
 0.4
 -0.0
 -0.6
38 LOC4346094 UDP-glucuronate 4-epimerase 6 4346094 Os08g0526100 2.0 2.9



39 LOC4343868 PHD finger protein ALFIN-LIKE 9-like 4343868 OSNPB_070608400 2.0 3.1
 0.9
0.7
 1.3
1.0
 1.2
0.8
 1.0
0.9
40 LOC107279235 uncharacterized LOC107279235 107279235 2.0 3.0



41 LOC4328122 uncharacterized LOC4328122 4328122 Os02g0121500 2.0 2.6



42 LOC4347153 uncharacterized LOC4347153 4347153 Os09g0436900 2.0 2.8
 2.1
 0.6
 -0.6
 1.6
43 LOC4324165 anthocyanidin 5,3-O-glucosyltransferase 4324165 Os01g0734600 2.0 2.9



44 LOC4339622 probable E3 ubiquitin-protein ligase ZFP1 4339622 Os05g0564300 2.0 2.6
 -0.7
-0.9
 0.7
0.2
 2.2
-0.2
 -1.8
45 LOC4344262 pentatricopeptide repeat-containing protein At3g18020 4344262 Os07g0674300 2.0 2.5
 1.2
 1.1
 -0.1
 1.5
46 LOC4351479 protein TRAUCO 4351479 Os12g0143200 2.0 2.6
 -0.8
-1.0
 1.3
 0.3
-0.0
 1.0
47 LOC4330860 pentatricopeptide repeat-containing protein At1g05750, chloroplastic 4330860 Os02g0769900 2.0 2.7
 1.8
 0.2
 -0.2
 0.9
0.5
48 LOC4337558 uncharacterized LOC4337558 4337558 Os05g0105500 2.0 2.7
 -0.1
-1.0
 1.4
-0.1
 -0.4
-1.5
 1.3
-0.3
49 LOC9268172 uncharacterized LOC9268172 9268172 Os01g0887400 2.0 2.8
 2.3
0.5
 0.7
 -0.1
 2.0
50 LOC4340457 aminoacylase-1 4340457 Os06g0210200 2.0 2.7
 -0.3
 1.6
 2.2
0.2
 0.1
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