Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332063   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like 
 osa-r.5   4332063   pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like 
 ath-u.4   SVR7   pentatricopeptide (PPR) repeat-containing protein 
 gma-u.4   106794528   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.4   100818701   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 gma-u.4   100818251   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 sly-u.4   101264082   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 sly-u.4   101258591   pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like 
 ppo-u.4   7479598   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 ppo-u.4   7474081   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.4   120578292   pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like 
 mtr-u.4   25486257   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 
 mtr-u.4   11437309   pentatricopeptide repeat-containing protein At4g16390, chloroplastic 

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Top 50 coexpressed genes to 4332063 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa30   Pentose phosphate pathway  1 57 -
 osa51   Fructose and mannose metabolism  1 64 -
 osa710   Carbon fixation in photosynthetic organisms  1 77 -
 osa10   Glycolysis / Gluconeogenesis  1 143 -

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osa:LOC4332063 (pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic-like) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332063
osa-r.5
for
4332063
ath-u.4
for
SVR7
gma-u.4
for
106794528
gma-u.4
for
100818701
gma-u.4
for
100818251
sly-u.4
for
101264082
sly-u.4
for
101258591
ppo-u.4
for
7479598
ppo-u.4
for
7474081
mtr-u.4
for
120578292
mtr-u.4
for
25486257
mtr-u.4
for
11437309
1 LOC4351951 oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 4351951 Os12g0270100 4.1 5.5
 2.3
 6.2
 4.7
 4.7
 3.3
 2.6
 2.7
 4.0
 1.7
 1.6
 1.4
2 LOC4329341 pentatricopeptide repeat-containing protein At1g09900 4329341 Os02g0470000 3.7 5.0










3 LOC4334836 pentatricopeptide repeat-containing protein At5g46580, chloroplastic 4334836 Os03g0856100 3.6 4.7
 10.0
 5.5
5.0
 7.7
6.9
 5.1
4.6
 8.6
 4.7
 2.4
 4.1
 1.2
 4.5
 6.1
4 LOC4330370 50S ribosomal protein L18 4330370 Os02g0689700 3.5 5.0
 1.2
 1.8
1.8
 3.6
2.3
 2.4
1.4
 1.8
 1.0
 1.4
1.1
 2.8
0.9
 1.1
 1.0
 1.8
5 LOC4336891 pentatricopeptide repeat-containing protein At3g22150, chloroplastic 4336891 Os04g0602600 3.5 4.6
 2.4
 3.0
 3.8
 3.5
 2.8
 2.1
 3.5
 3.5
 0.3
 3.0
 2.1
6 LOC4345435 thioredoxin-like protein CITRX, chloroplastic 4345435 OSNPB_080378900 3.3 4.3
 5.1
 3.7
2.7
 4.3
3.0
 2.8
2.0
 4.1
 1.9
 2.5
 2.3
 1.2
1.1
 4.3
2.0
 1.9
1.8
7 LOC4352705 renalase 4352705 Os12g0597400 3.3 4.3
 4.8
 1.7
 1.4
 1.7
 3.5
 2.0
 1.7
 2.1
 0.5
 2.0
 1.7
8 LOC4331249 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 4331249 Os02g0831200 3.3 4.0
 3.0
 1.6
 4.1
 1.9
 3.1
 1.9
 1.5
 3.3
 0.7
 2.4
 3.3
9 LOC4331123 glutathionyl-hydroquinone reductase YqjG 4331123 Os02g0814800 3.2 4.3
 0.8
 1.4
 2.6
 1.7
 3.2
 1.9
 2.0
 1.0
 -0.9
 0.3
 1.5
10 LOC4330860 pentatricopeptide repeat-containing protein At1g05750, chloroplastic 4330860 Os02g0769900 3.2 4.1
 1.3
 6.9
 3.8
 3.8
 2.2
 1.5
 2.2
 4.2
 1.3
0.6
 1.0
0.9
 2.6
2.5
11 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 3.2 4.2
 5.5
 3.3
 5.2
 2.7
 4.7
 2.4
 1.3
 2.1
 1.9
 4.2
 4.5
12 LOC4346468 protein CLMP1 4346468 Os09g0135400 3.1 3.9
 1.5
 5.4
5.2
 5.3
5.3
 4.1
2.9
 7.6
6.9
 4.8
4.0
 1.0
0.6
 2.4
2.1
 1.4
 2.8
 3.6
13 LOC4349304 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic-like 4349304 Os10g0548900 3.1 3.8
 8.7
 3.5
1.7
 3.8
1.7
 3.7
2.6
 5.3
 2.6
 2.5
 3.7
 1.4
 2.6
 3.2
14 LOC4335458 protein WHAT'S THIS FACTOR 1 4335458 Os04g0312100 3.1 3.8
 1.7
 1.2
 0.9
 1.4
 3.5
 2.1
 3.1
 3.6
 0.6
 1.5
 3.9
15 LOC9270240 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 9270240 Os06g0114366 3.1 4.0










16 LOC4335974 D-galacturonate reductase 4335974 Os04g0447500 3.1 4.4
 -1.6
 2.2
0.0
 2.5
-0.6
 2.0
0.1
 0.2
-0.4
 0.2
-1.0

0.3
0.1
 0.1
-0.8
 -0.1
-0.5
17 LOC4334962 pentatricopeptide repeat-containing protein At3g57430, chloroplastic 4334962 Os04g0118700 3.0 4.3
 4.3
 2.9
 4.2
 2.9
 3.8
 3.3
 2.9
 3.0
 0.6
 4.4
 4.8
18 LOC4340573 pentatricopeptide repeat-containing protein At5g06540 4340573 Os06g0231400 3.0 4.2
1.2
 2.0
 1.2
 1.1
 0.2
 2.6
 2.1


19 LOC4344232 probable GTP-binding protein OBGC1, chloroplastic 4344232 Os07g0669250 3.0 4.2
 4.4
 2.3
 3.1
 3.4
 4.7
 2.2
 2.6
 3.7
 2.3
 3.9
 5.5
20 LOC4325986 protein ABCI7, chloroplastic 4325986 Os01g0127300 3.0 4.2
 5.3
 2.8
 2.6
 1.7
 5.7
 2.9
 2.7
2.7
 2.5
2.2
 0.2
 4.1
 2.6
21 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 3.0 3.9










22 LOC4336112 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4336112 Os04g0469400 2.9 3.7
 0.9
 4.2
 3.1
 4.0
 1.7
 0.8

0.9
 1.9
 1.5
23 LOC4339230 uncharacterized LOC4339230 4339230 Os05g0500400 2.9 3.3
 2.0
 1.8
0.9
 3.4
3.3
 1.4
1.3
 2.8
 1.5
 0.6
 1.4
 1.0
 1.9
 0.8
24 LOC4332243 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 4332243 Os03g0247000 2.9 3.3
 3.9
1.5
 3.2
2.8
 3.9
3.0
 2.3
2.1
 6.5
5.4
 5.0
3.6
 1.3
0.7
 2.6
2.2
 0.3
-0.5
 3.6
3.1
 2.9
1.8
25 LOC4340243 uncharacterized LOC4340243 4340243 Os06g0166200 2.9 3.7
 6.3




2.0
 2.9
 0.4
 3.1
 5.8
26 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 2.9 3.9










27 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 2.9 3.4
 0.1
 2.4
 1.5
 2.0
 4.0
 2.1
 1.1
 1.8
 -0.3
 3.0
 2.5
28 LOC4339930 uncharacterized LOC4339930 4339930 Os06g0116400 2.8 3.5
 4.0
1.6
 2.9
2.1
 2.2
2.0
 2.1
2.0
 3.0
1.5
 1.9
1.4
 0.5
-0.7
 1.0
0.0
 -0.4
 1.8
 0.0
29 LOC4324472 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4324472 Os01g0966200 2.8 3.8
 2.7
 -0.1
-0.2
 2.0
1.4
 0.6
0.3
 1.0
 1.0
 0.6
 0.7
 0.3
 2.7
 2.3
30 LOC4334866 DIBOA-glucoside dioxygenase BX6 4334866 Os03g0860600 2.8 3.9










31 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 2.8 3.4
 6.2
 0.8
 2.2
 1.8
 4.3
 3.3
 2.3
1.9
 4.1
1.3
 0.5
 5.8
 1.7
32 LOC4346272 uncharacterized protein ycf39 4346272 Os08g0553800 2.8 4.0
 0.7
 0.3
 0.6
 0.4
 0.6
 -0.2
 1.7
0.0
 1.1
-0.4
 -0.9
 0.2
 2.2
33 LOC4342622 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 4342622 Os07g0191500 2.8 3.4
 3.4
 1.4
 2.8
 1.8
 4.1
 2.0
 2.0
 3.0
 3.2
 3.3
 3.9
34 LOC9271320 uncharacterized LOC9271320 9271320 Os03g0138900 2.8 3.9
 2.4




2.5
 1.8
 -0.2
 0.3
 1.5
35 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 2.7 3.9
 3.0
 1.3
0.0
 2.8
0.8
 2.1
1.0
 3.1
 3.1
 1.7
1.1
 2.0
1.7
 1.1
 4.3
 3.8
36 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 2.7 3.5
 2.5
 3.0
2.8
 3.3
3.1
 3.4
3.0
 2.8
 0.1
 0.9
 2.6
 0.8
 2.7
 2.7
37 LOC4341770 fructose-1,6-bisphosphatase, chloroplastic 4341770 Os06g0664200 2.7 3.9
 1.2
 2.7
1.6
 3.3
2.1
 3.2
1.0
 -0.4
 0.2
 1.4
 3.3
 0.2
 3.5
 4.3
38 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 2.7 3.2
 2.2
 2.8
2.0
 4.2
1.9
 3.2
1.7
 3.4
 2.4
 1.6
 3.1
 1.2
 3.6
 2.8
39 LOC4330746 photosynthetic NDH subunit of lumenal location 4, chloroplastic 4330746 Os02g0751600 2.7 3.3
 -1.1
 0.3
 0.8
 -0.0

2.1
 0.7
 -0.3
 1.5
 1.5
40 LOC4343774 pentatricopeptide repeat-containing protein At5g02860 4343774 Os07g0590600 2.7 3.7
 3.1
 5.0
1.6
 5.4
2.9
 5.0
2.9
 3.7
 1.0
 5.0
2.5
 4.4
3.4
 1.5
 2.0
 4.4
41 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 2.7 3.8
 2.9
 2.2
 2.3
 2.3
 4.9
 4.2
 2.0
 2.5
 0.9
 2.6
 3.5
42 wsl6 white stripe leaf6 9271571 OSNPB_050567300 2.7 3.3
 5.5
 1.7
1.4
 3.4
1.2
 1.7
0.9
 3.7
 3.0
 1.1
 2.9
 -0.2
 3.4
 2.3
43 LOC107276689 pentatricopeptide repeat-containing protein At3g42630 107276689 Os08g0520200 2.7 3.9
 0.2
 0.7
0.3
 2.2
0.6
 2.9
0.4
 0.6
 0.7
 2.1
 1.4
 1.1
1.0
 2.0
2.0
 2.5
2.0
44 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 2.7 3.4
 1.6
 1.8
0.8
 2.9
1.3
 1.9
1.2
 1.8
 1.5
 2.1
 1.5
 -0.2
-0.4
 3.3
-0.5
 1.4
-0.4
45 LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial 4342480 Os07g0165000 2.7 3.7
 4.3
 1.3
0.8
 2.9
2.7
 2.2
2.2
 5.5
 3.4
 1.7
 3.0
 0.6
 3.8
 3.8
46 LOC4340666 1-aminocyclopropane-1-carboxylate oxidase homolog 4 4340666 2.7 3.8
0.9
-0.5
 -0.3
-0.4
 0.2
0.0
 0.3
 0.0
 0.7
 2.3
 -0.4
-0.8
 0.8
0.1
 0.4
-0.0
47 LOC4327435 probable phytol kinase 2, chloroplastic 4327435 OSNPB_010832000 2.7 3.4
 -0.6
 -0.4
 -0.4
 -0.0
 -0.5
 0.1
 0.4
-0.9
 -0.0
-0.2
 -0.9
-1.4
 3.1
1.1
 0.7
-0.0
48 LOC4352665 uncharacterized LOC4352665 4352665 Os12g0587200 2.6 3.6










49 LOC4328331 uncharacterized LOC4328331 4328331 Os02g0152900 2.6 3.4










50 LOC9272178 uncharacterized LOC9272178 9272178 Os02g0313450











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