Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332348   50S ribosomal protein L4, chloroplastic 
 osa-r.5   4332348   50S ribosomal protein L4, chloroplastic 
 osa-m.8   4332348   50S ribosomal protein L4, chloroplastic 
 ath-u.4   RPL4   ribosomal protein L4 
 gma-u.4   100803701   50S ribosomal protein L4, chloroplastic 
 gma-u.4   100790380   50S ribosomal protein L4, chloroplastic 
 sly-u.4   101254712   50S ribosomal protein L4, chloroplastic 
 ppo-u.4   7492297   50S ribosomal protein L4, chloroplastic 
 mtr-u.4   25500064   50S ribosomal protein L4, chloroplastic 

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Top 50 coexpressed genes to 4332348 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  26 335 34.59
 osa195   Photosynthesis  3 76 3.26
 osa3018   RNA degradation  1 112 -
 osa3015   mRNA surveillance pathway  1 115 -

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osa:LOC4332348 (50S ribosomal protein L4, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332348
osa-r.5
for
4332348
osa-m.8
for
4332348
ath-u.4
for
RPL4
gma-u.4
for
100803701
gma-u.4
for
100790380
sly-u.4
for
101254712
ppo-u.4
for
7492297
mtr-u.4
for
25500064
1 LOC4334749 30S ribosomal protein S6 alpha, chloroplastic 4334749 Os03g0843400 12.6 10.6
 14.6
 12.9
 7.6
7.0
 9.8
9.2
 8.7
 6.5
 3.5
2 LOC4334651 50S ribosomal protein L18, chloroplastic-like 4334651 OSNPB_030828100 11.2 10.4
 12.1
 11.0
 6.4
 8.4
 6.3
 4.0
3.4
 3.2
3 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 11.0 7.4
 14.7
 15.6
 5.8
 9.4
 8.2
5.0
 5.5
3.9
 4.8
4 LOC4332466 50S ribosomal protein L10, chloroplastic 4332466 Os03g0284400 10.7 8.5
 12.9
 7.4
 6.3
 8.4
 9.9
 5.3
4.1
 3.6
5 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 10.6 8.7
 12.6
 12.7
 6.5
4.9
 9.0
7.4
 9.1
 4.8
 3.9
6 LOC4331942 30S ribosomal protein S10, chloroplastic 4331942 Os03g0196800 10.6 9.2
 12.0





7 LOC4334555 50S ribosomal protein L17, chloroplastic 4334555 Os03g0815400 10.4 9.1
 11.7
 11.3
 4.6
3.9
 7.0
6.2
 8.3
6.6
 6.7
5.3
 4.2
8 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 10.2 8.3
 12.1
 17.6
 6.8
4.5
 10.1
6.7
 8.2
 7.5
1.6
 4.2
9 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 10.2 8.8
 11.6
 8.1
 7.3
6.2
 8.6
8.0
 8.4
 7.0
 1.7
10 LOC4333233 30S ribosomal protein S5, chloroplastic 4333233 Os03g0452300 10.0 9.0
 10.9
 16.6
 9.5
7.9
 12.0
11.4
 13.6
 6.2
 5.0
11 LOC4330763 50S ribosomal protein L29, chloroplastic 4330763 Os02g0754300 9.8 7.6
 12.0
 11.1
 5.6
5.2
 7.0
6.2
 7.4
4.8
 5.1
1.0
 3.7
12 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 9.8 8.5
 11.1
 12.1
 4.2
3.5
 6.3
4.8
 10.2
 6.3
4.2
 2.2
13 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 9.6 7.1
 12.2
 9.7
 5.4
 6.8
 9.4
 4.6
3.4
 2.3
14 LOC4332089 50S ribosomal protein L15, chloroplastic 4332089 Os03g0219900 9.6 7.7
 11.6
 12.4
 6.8
 9.1
 8.6
 8.9
0.5
 5.4
15 LOC4327541 50S ribosomal protein L34, chloroplastic 4327541 Os01g0805000 9.3 9.2
 9.4
 11.0
 7.7
5.7
 9.3
8.0
 8.3
 7.5
 1.7
16 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 9.1 8.2
 10.0
 3.6
-0.4
 8.9
 11.3
 5.4
3.3
 4.6
2.9
 3.1
17 ASL2 Albino Seedling Lethal2 4328932 Os02g0259600 9.0 8.3
 9.7
 9.9
 7.0
6.4
 9.3
8.9
 10.0
 7.4
3.5
 3.4
18 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 8.6 8.7
 8.6
 6.0
 4.4
4.3
 5.6
5.2
 6.1
 2.7
0.9
 3.1
19 LOC4324275 50S ribosomal protein 5, chloroplastic 4324275 Os01g0278900 8.4 6.9
 9.8





20 wgl2 white green leaf2 4334247 Os03g0769100 8.2 6.7
 9.7
 15.5
 6.6
5.4
 9.0
7.1
 9.9
 6.6
5.6
 2.0
21 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 8.1 6.1
 10.2
 8.8
 5.9
4.6
 5.9
5.0
 9.3
 4.8
 4.0
22 LOC4334131 50S ribosomal protein L6, chloroplastic 4334131 Os03g0751400 8.1 5.1
 11.1
 13.0
 5.4
4.5
 7.9
6.4
 8.9
 6.3
 3.6
23 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 8.1 5.4
 10.8
 14.0
 5.8
3.7
 7.3
4.8
 11.1
 5.0
 3.6
24 LOC4338460 uncharacterized LOC4338460 4338460 Os05g0337400 8.1 7.5
 8.6
 10.3
 6.5
5.8
 8.0
6.3
 9.5
 6.5
 3.8
25 LOC4337506 30S ribosomal protein S17, chloroplastic-like 4337506 Os04g0691600 7.9 7.8
 8.0
6.4
6.3
 9.8
8.1
 8.3
 6.3
 2.6
26 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 7.6 6.5
 8.8
 9.5
 6.3
5.8
 11.3
7.2
6.9
 3.2
27 LOC4332730 uncharacterized LOC4332730 4332730 Os03g0331600 7.5 6.3
 8.8
 6.2
 4.4
3.1
 7.5
6.3
 5.5
 5.0
 2.6
28 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 7.5 5.1
 10.0
 8.8
 4.8
4.6
 5.9
5.3
 7.5
 4.3
 2.9
29 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 7.5 6.7
 8.3
 13.0
 5.4
4.5
 7.9
6.4
 8.9
 6.3
 3.6
30 LOC4340929 uncharacterized LOC4340929 4340929 Os06g0332800 7.4 7.6
 7.3
 5.9
 5.2
3.5
 7.2
4.5
 4.5
 3.1
0.6
 2.1
31 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 7.2 5.2
 9.2
 10.1
 5.1
 7.1
 6.2
 5.2
 3.1
32 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 6.7 5.9
 7.5
 15.6
4.2
 6.3
6.3
 10.0
8.1
 10.9
 7.2
3.8
 4.2
3.2
33 LOC4339629 uncharacterized LOC4339629 4339629 Os05g0565500 6.6 4.9
 8.3
1.5
1.0
 1.9
1.7
 2.0
 2.9
 0.5
34 LOC4342438 RNA-binding protein CP33, chloroplastic 4342438 Os07g0158300 6.4 6.0
 6.9
 8.1
 5.4
5.1
 6.9
6.6
 6.0
 4.9
3.5
 2.0
1.5
35 LOC4333624 ferredoxin C 1, chloroplastic 4333624 Os03g0659200 6.4 6.0
 6.8
3.9
2.5
 7.3
3.4
 1.7
 2.7
1.2
 1.6
36 LOC4331815 ylmG homolog protein 2, chloroplastic 4331815 Os03g0178200 6.4 7.9
 4.9
 5.6
 3.7
2.6
 6.3
4.6
 4.6
 4.1
 2.3
37 LOC4331439 nascent polypeptide-associated complex subunit alpha-like protein 1 4331439 Os03g0121700 6.3 7.8
 4.8
 3.4
1.9
 2.2
1.0
 1.9
0.8
 1.9
0.5
 2.9
2.2
 2.9
1.4
38 LOC4337539 photosynthetic NDH subunit of lumenal location 5, chloroplastic 4337539 Os05g0103200 6.3 5.8
 6.8
 4.5
 5.0
3.1
 6.1
3.9
 8.8
 4.2
3.4
 3.9
39 LOC4327627 protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic-like 4327627 OSNPB_010798500 6.3 5.1
 7.4
 2.1
 4.4
3.2
 4.1
3.2
 2.7
 1.8
 2.1
40 LOC4332652 30S ribosomal protein S1, chloroplastic 4332652 Os03g0315800 6.2 5.7
 6.8
 7.5
 6.5
3.8
 9.0
4.4
 9.2
2.7
 5.9
5.3
 6.4
41 LOC4340391 putative peroxiredoxin Q, chloroplastic 4340391 OSNPB_060196300 6.2 8.2
 4.3
 5.4
 2.7
2.0
 3.6
1.8
 4.6
 3.7
3.1
 1.0
42 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 6.2 5.8
 6.6
 5.3
0.5
 4.4
4.2
 3.7
3.2
 5.4
-0.2
 2.9
1.8
 3.4
2.1
43 LOC4324026 protein FLUORESCENT IN BLUE LIGHT, chloroplastic 4324026 Os01g0510600 6.2 6.1
 6.3
 8.4
 4.2
3.5
 3.5
3.1
 7.6
2.2
 1.3
 2.5
44 LOC4329197 fruit protein pKIWI502 4329197 Os02g0328300 6.2 5.1
 7.3
 2.3
 4.9
1.3
 5.3
1.8
 5.1
 3.7
-0.7
 2.6
45 LOC4349608 elongation factor P 4349608 Os11g0116400 6.1 6.2
 6.1
 9.8
 3.5
2.5
 5.0
3.2
 4.1
 4.5
 2.5
46 LOC4333746 ferredoxin C 2, chloroplastic 4333746 Os03g0685000 6.1 6.7
 5.5
 1.8
 5.6
2.7
 5.7
3.8
 5.9
 2.5
 2.7
47 LOC4334910 uncharacterized LOC4334910 4334910 Os04g0105700 6.1 5.6
 6.6
 4.1
 5.6
 6.6
 4.5
 4.0
 2.4
48 LOC4341664 50S ribosomal protein L35, chloroplastic 4341664 Os06g0647100 6.1 6.0
 6.2
 8.8
 7.5
5.8
 8.4
7.9
 8.0
 2.4
 3.5
49 LOC4337526 50S ribosomal protein L28, chloroplastic 4337526 Os05g0101400 6.1 6.8
 5.4
 9.7
 5.2
 8.1
 9.2
 5.5
 2.7
50 LOC9272428 50S ribosomal protein L19-2, chloroplastic 9272428 Os02g0652600 6.1 8.2
10.3
9.6
 5.5
3.8
 7.5
6.9
 9.6
 4.2
 4.0
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