Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332388   RNA polymerase sigma factor sigB 
 osa-r.5   4332388   RNA polymerase sigma factor sigB 
 osa-m.8   4332388   RNA polymerase sigma factor sigB 
 osa-u.4   4350441   RNA polymerase sigma factor sigB 
 ath-u.4   SIG2   RNApolymerase sigma subunit 2 
 gma-u.4   106799192   RNA polymerase sigma factor sigB-like 
 gma-u.4   100788815   RNA polymerase sigma factor sigB 
 sly-u.4   101263246   RNA polymerase sigma factor sigB 
 ppo-u.4   7482402   RNA polymerase sigma factor sigB 
 ppo-u.4   7491092   RNA polymerase sigma factor sigB 
 mtr-u.4   11419288   RNA polymerase sigma factor sigB 

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Top 50 coexpressed genes to 4332388 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa630   Glyoxylate and dicarboxylate metabolism  2 76 -
 osa4146   Peroxisome  2 92 -
 osa1240   Biosynthesis of cofactors  2 248 -
 osa1200   Carbon metabolism  2 273 -
 osa3010   Ribosome  3 353 -

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osa:LOC4332388 (RNA polymerase sigma factor sigB) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332388
osa-r.5
for
4332388
osa-m.8
for
4332388
osa-u.4
for
4350441
ath-u.4
for
SIG2
gma-u.4
for
106799192
gma-u.4
for
100788815
sly-u.4
for
101263246
ppo-u.4
for
7482402
ppo-u.4
for
7491092
mtr-u.4
for
11419288
1 LOC4330746 photosynthetic NDH subunit of lumenal location 4, chloroplastic 4330746 Os02g0751600 4.7 4.0
 5.5
 3.8
 2.5
 3.2
 3.4
4.6
 1.9
 2.6
2 LOC4331897 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 4331897 Os03g0190100 4.7 4.7
 4.6
 4.5
 5.1
 3.5
2.5
 3.2
2.9
 3.4
 0.3
 -0.4
 3.3
3 LOC4324388 uncharacterized LOC4324388 4324388 Os01g0680600 4.6 6.5
 2.7
 2.0
 1.9
1.4
 2.8
 3.1
 1.0
-1.3
 3.3
-0.2
 3.7
1.2
 2.6
4 LOC4349041 thylakoid lumenal 17.4 kDa protein, chloroplastic 4349041 Os10g0502000 4.5 4.6
 4.4
 4.2
 4.0
 3.3
1.5
 3.5
2.1
 5.6
 2.4
 2.3
 3.9
5 LOC4348548 uncharacterized LOC4348548 4348548 Os10g0395200 4.5 4.4
 4.5
 3.7
0.7
 2.4
 1.8
1.8
 3.1
2.7
 2.7
 3.3
-0.6
 1.5
0.1
 4.1
6 LOC4331942 30S ribosomal protein S10, chloroplastic 4331942 Os03g0196800 4.3 4.0
 4.6
 5.9






7 LOC4345971 thylakoid lumenal 19 kDa protein, chloroplastic 4345971 Os08g0504500 4.3 4.2
 4.3
 3.2
 3.2
 3.5
3.4
 3.1
3.0
 4.2
 1.9
 1.6
 3.6
8 LOC4328006 putative nitric oxide synthase 4328006 OSNPB_020104700 4.2 4.2
 4.2
 6.4
 4.6
 4.1
2.6
 3.8
3.0
 4.0
 3.5
 3.2
 5.6
9 LOC4325426 uncharacterized LOC4325426 4325426 Os01g0382700 4.1 4.3
 4.0
 1.6
 3.0
 -0.1
 0.8
 2.8
 2.4
 0.7
 1.7
10 LOC4334251 cytochrome c biogenesis protein CCS1, chloroplastic-like 4334251 OSNPB_030769600 4.1 5.0
 3.2
 5.2
 5.9
 5.5
 5.4
 6.0
 2.1
 0.4
 3.4
11 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.0 3.5
 4.6
 6.3
 7.3
 6.5
 5.3
 7.9
 4.9
 2.2
 3.4
12 LOC4330307 uncharacterized LOC4330307 4330307 Os02g0677600 4.0 3.0
 5.1
 0.5
 2.7
 1.6
1.6
 1.7
1.6
 2.2
 2.3
 0.7
 1.6
13 LOC4324472 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4324472 Os01g0966200 4.0 2.8
 5.2
 3.6
 4.0
 3.5
2.0
 2.8
2.6
 3.2
 1.3
 1.6
 3.8
14 LOC4343647 uncharacterized LOC4343647 4343647 Os07g0568900 4.0 2.6
 5.4
 6.0






15 LOC4344232 probable GTP-binding protein OBGC1, chloroplastic 4344232 Os07g0669250 4.0 4.4
 3.5
 5.2
 5.3
 5.9
 6.7
 5.7
 3.8
 4.3
 5.7
16 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 3.9 3.9
 3.9
 4.0
 1.7
 3.2
3.2
 4.1
2.8
 3.5
 2.3
 3.3
 1.7
17 LOC4337135 uncharacterized LOC4337135 4337135 Os04g0635700 3.9 4.0
 3.8
 4.3
 3.3
 3.5
2.9
 4.0
3.4
 2.0
 3.3
0.5
 0.4
0.1
 1.8
18 LOC4326517 uncharacterized LOC4326517 4326517 Os01g0940600 3.8 4.5
 3.1
 4.2
 2.9
 3.6
 4.4
 3.1
 3.7
 4.0
 4.0
19 LOC4345962 serine--glyoxylate aminotransferase 4345962 Os08g0502700 3.8 4.0
 3.7
 0.6
 2.0
 1.4
0.4
 1.7
1.2
 1.2
 2.8
1.6
 1.0
0.5
 2.0
-0.7
20 LOC4325987 uncharacterized lipoprotein syc1174_c 4325987 Os01g0127400 3.8 3.6
 4.0
 6.1
2.2
 2.7
 6.4
 1.5
 0.4
 1.9
21 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 3.8 3.8
 3.8
 5.2
 4.9
 5.5
4.0
 5.7
4.6
 5.3
 3.1
 4.1
 3.5
22 LOC9270240 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 9270240 Os06g0114366 3.7 4.0
 3.5
 2.9






23 LOC4342717 pentatricopeptide repeat-containing protein At2g41720 4342717 Os07g0213300 3.7 3.1
 4.3
 3.3
 4.5
 5.0
 4.4
 4.7
 0.5
 1.4
 3.6
24 LOC4334778 arginine decarboxylase 4334778 Os03g0848100 3.7 4.5
 2.9
 3.6
1.8
 1.2
 3.2
-0.1
 1.4
 2.1
 4.8
-0.6
25 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 3.7 3.6
 3.7
 7.5
 2.9
 4.8
 6.3
 3.1
 1.9
 2.0
 6.5
26 LOC4332348 50S ribosomal protein L4, chloroplastic 4332348 Os03g0265400 3.7 3.1
 4.2
 5.5
 4.2
 6.3
4.8
 8.4
5.7
 6.4
 5.0
 2.7
 3.5
27 LOC9267504 D-ribulose kinase 9267504 Os07g0409200 3.6 3.5
 3.7
 2.0
 2.5
 2.8
 2.8
 1.6
 2.6
 2.5
 2.6
28 LOC4347166 photosystem I chlorophyll a/b-binding protein 6, chloroplastic 4347166 Os09g0439500 3.6 3.3
 3.9
 1.6
 2.7
 3.1
1.9
 3.0
2.4
 3.1
 1.6
 0.5
 2.9
29 LOC4339890 pentatricopeptide repeat-containing protein At5g27270 4339890 Os06g0111300 3.6 4.1
 3.1
 4.7
 2.3
 2.0
 3.5
 2.2
 0.4
-0.1
 1.2
0.6
 3.5
30 LOC107277281 pentatricopeptide repeat-containing protein At4g01030, mitochondrial 107277281 Os05g0586900 3.6 4.7
3.7
 1.7
 2.4
1.7
 2.3
1.8
 3.1
 0.5
 0.4
 2.4
31 LOC4346559 uncharacterized LOC4346559 4346559 Os09g0266000 3.6 3.4
 3.7
 3.7
 -0.4
 3.6
 3.4
 1.3
 1.1
 2.4
 1.5
32 LOC4339017 probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 4339017 OSNPB_050460600 3.5 4.1
 3.0
 0.4
 2.2
 1.3
 2.0
 4.0
 1.1
 0.6
 1.0
33 LOC4334749 30S ribosomal protein S6 alpha, chloroplastic 4334749 Os03g0843400 3.5 2.6
 4.5
 4.8
 3.6
 7.4
6.2
 8.2
8.2
 5.9
 2.9
 3.0
 2.9
34 LOC4342622 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 4342622 Os07g0191500 3.5 3.2
 3.8
 2.0
 2.3
 1.9
 2.4
 2.5
 0.9
 1.8
 1.3
35 LOC4341062 uncharacterized LOC4341062 4341062 Os06g0484500 3.5 3.9
 3.1
 1.9
 4.1
 2.8
2.8
 3.7
3.0
 3.0
 2.0
0.6
 1.0
0.2
 4.7
36 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 3.5 3.9
 3.0
 5.5
-0.1
 1.6
0.9
 3.1
2.5
 3.5
2.5
 2.6
 3.0
1.2
 1.9
0.8
 1.8
1.6
37 LOC4326474 uncharacterized LOC4326474 4326474 3.5 4.0
 2.9







38 LOC4333900 uncharacterized LOC4333900 4333900 Os03g0713200 3.4 3.1
 3.7
 3.5
2.2
0.3
 1.9
1.3
 1.4
 2.0
 1.5
39 LOC4333747 uncharacterized tRNA/rRNA methyltransferase YsgA 4333747 Os03g0685100 3.4 2.1
 4.7
 4.8
 1.6
 0.7
 0.8
 3.2
 0.4
 1.3
 2.6
40 LOC4326159 protein EXECUTER 2, chloroplastic-like 4326159 OSNPB_010107900 3.4 4.0
 2.8
 3.3
 2.5
 2.3
1.5
 2.4
1.9
 3.9
 2.7
0.8
 2.2
2.0
 2.9
41 LOC4327403 pentatricopeptide repeat-containing protein At5g39980, chloroplastic 4327403 Os01g0833000 3.4 2.7
 4.1
 2.3
 3.6
 4.1
2.2
 4.6
1.9
 3.3
 2.7
 3.1
 2.3
42 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 3.4 2.9
 3.9
 7.0
 4.4
 6.5
4.2
 5.9
3.3
 3.6
 4.5
 2.0
 2.9
0.2
43 LOC4334349 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like 4334349 Os03g0786000 3.4 3.3
 3.4
 1.1
-0.1
 3.7
1.3
 1.3
1.2
 1.5
0.5
 0.8
0.5
 1.0
0.2
 0.2
-0.5
 1.2
1.1
44 LOC4334962 pentatricopeptide repeat-containing protein At3g57430, chloroplastic 4334962 Os04g0118700 3.4 4.5
1.5
 3.6
 3.0
 3.9
 3.9
 3.0
 1.8
 4.1
45 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 3.4 2.3
 4.4
 7.4
 3.9
 5.5
1.6
 5.3
2.8
 4.6
 1.2
 1.9
 2.5
46 LOC4337429 endonuclease MutS2 4337429 Os04g0680700 3.4 3.5
 3.2
 4.5
 3.3
 2.8
 3.3
 2.1
 1.4
 2.0
 4.8
47 LOC4332759 pentatricopeptide repeat-containing protein At5g41170, mitochondrial 4332759 Os03g0336000 3.3 3.8
 2.9
 2.0
2.4
 2.0
 1.4
 2.2
 2.1
 2.5
48 LOC4336744 GDSL esterase/lipase At5g41890 4336744 Os04g0577300 3.3 1.9
 4.7
 3.3


0.3


49 LOC4343973 15-cis-phytoene desaturase, chloroplastic/chromoplastic 4343973 Os07g0626800 3.3 2.7
 3.9
 1.7
 4.2
 2.9
 3.0
 4.1
 2.0
 1.6
 3.6
50 LOC4339380 photosystem I assembly factor PSA3, chloroplastic 4339380 Os05g0526200 3.3 4.6
 2.0
 2.7
 5.9
 5.8
3.1
 5.2
3.7
 4.0
 0.5
 1.0
 2.1
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