Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332471   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 osa-r.5   4332471   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 osa-m.8   4332471   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 ath-u.4   AT5G02830   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100794606   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 sly-u.4   101261059   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 ppo-u.4   18100244   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 
 mtr-u.4   11430650   pentatricopeptide repeat-containing protein At5g02830, chloroplastic 

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Top 50 coexpressed genes to 4332471 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3060   Protein export  2 49 2.32
 osa310   Lysine degradation  1 36 -
 osa30   Pentose phosphate pathway  1 57 -
 osa561   Glycerolipid metabolism  1 84 -
 osa480   Glutathione metabolism  2 114 -

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osa:LOC4332471 (pentatricopeptide repeat-containing protein At5g02830, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332471
osa-r.5
for
4332471
osa-m.8
for
4332471
ath-u.4
for
AT5G02830
gma-u.4
for
100794606
sly-u.4
for
101261059
ppo-u.4
for
18100244
mtr-u.4
for
11430650
1 LOC4329586 ribonuclease J 4329586 Os02g0539600 5.4 3.6
 7.3
 0.5
 4.5
4.1
 1.6
 2.8
2.0
 6.0
0.2
2 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 5.1 2.8
 7.5
 1.3
 3.2
2.0
 1.1
 1.6
 1.4
3 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 4.5 3.2
 5.8
 0.9
 2.6
1.8
 0.6
 1.7
 2.6
4 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 4.4 3.9
 4.9
 1.2
 1.9
 3.9
 2.5
 2.9
5 LOC4341569 stromal processing peptidase, chloroplastic-like 4341569 Os06g0625400 4.2 4.7
 3.8
 0.9
 2.5
1.6
 2.0
 2.1
 2.8
6 LOC4348626 acylamino-acid-releasing enzyme 1-like 4348626 Os10g0415600 4.0 5.0
 2.9
 -1.0
 2.8
1.7
 2.2
1.4
 1.0
 2.1
0.7
7 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 4.0 2.7
 5.2
 4.0
 3.3
 2.9
4.2
8 LOC4340450 uncharacterized LOC4340450 4340450 Os06g0209300 3.8 4.2
 3.5
 2.3
 1.0
0.6
 0.8
 2.4
2.1
 2.7
9 LOC4347448 protein Iojap, chloroplastic 4347448 Os09g0493600 3.8 2.5
 5.1
 0.6
 1.4
1.0
 1.6
 1.0
0.5
 2.5
10 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 3.8 2.8
 4.8
 -1.3
 1.8
0.8
 2.1
 1.5
0.3
 2.7
11 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 3.7 2.3
 5.2
 3.3
 5.7
1.7
 3.2
 2.6
1.6
 6.5
12 LOC4336989 APO protein 1, chloroplastic 4336989 Os04g0615500 3.7 4.0
 3.5
 0.1
 2.4
1.2
 0.8
 1.0
 0.8
13 LOC4334387 probable zinc metalloprotease EGY1, chloroplastic 4334387 OSNPB_030792400 3.7 3.4
 4.0
 3.1
 2.9
2.2
 2.0
 2.3
 4.3
14 LOC4327790 probable 2-carboxy-D-arabinitol-1-phosphatase 4327790 Os01g0237100 3.7 2.0
 5.4
2.0
2.0
 2.3
 1.5
 1.9
15 LOC4325801 chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic-like 4325801 OSNPB_010132800 3.7 4.2
 3.1
 0.5
-0.2
 4.2
 1.1
 0.0
 1.4
0.3
16 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 3.6 2.2
 5.1
 1.6
 1.9
0.7
 2.0
 4.3
 2.0
17 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 3.6 2.5
 4.7
 4.1
 4.1
 0.9
 0.9
 2.7
18 LOC4332853 chromatin-remodeling ATPase INO80 4332853 Os03g0352500 3.6 4.2
 3.0
 0.8
 1.9
0.9
 1.6
 1.0
0.9
 1.2
19 LOC4351854 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4351854 Os12g0236900 3.6 3.8
 3.3
 -0.0
 3.6
2.8
 0.8
 1.5
 2.9
20 LOC4333825 importin-5 4333825 Os03g0701000 3.6 3.2
 3.9
 -0.0
 1.0
0.3
 -0.2
 0.9
0.4
 1.5
0.8
21 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 3.5 4.1
 2.9
 0.7
-0.6
 3.6
3.2
 0.6
 2.6
2.3
 2.8
1.3
22 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 3.5 3.1
 3.8
 6.4
 3.5
2.6
 3.3
 2.3
1.0
 2.5
2.1
23 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 3.4 2.7
 4.2
 0.1
 3.5
3.4
 1.1
 3.8
3.3
 2.2
24 LOC4334045 serine/threonine-protein kinase SMG1 4334045 Os03g0738300 3.4 4.0
 2.9
1.2
 2.6
 1.3
 1.3
25 LOC4330619 pentatricopeptide repeat-containing protein At3g22690 4330619 Os02g0730900 3.4 1.9
 5.0




26 LOC4347968 protein NRT1/ PTR FAMILY 8.3 4347968 Os10g0111300 3.4 3.7
 3.0




27 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 3.4 2.2
 4.5
 5.7
 4.8
 2.8
 1.5
 3.5
28 LOC4331681 photosynthetic NDH subunit of subcomplex B 2, chloroplastic 4331681 Os03g0158300 3.4 1.7
 5.0
 2.4
 5.3
2.1
 2.1
 2.0
 1.3
29 LOC4339063 UTP--glucose-1-phosphate uridylyltransferase 3, chloroplastic 4339063 Os05g0468600 3.4 2.8
 3.9
 3.9
 3.7
1.3
 2.6
 2.5
 3.3
30 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 3.3 1.2
 5.5
 0.3
 1.1
0.7
 0.7
-0.9
 1.7
1.2
 1.1
-0.6
31 LOC4345611 chaperonin-like RBCX protein 1, chloroplastic 4345611 Os08g0425200 3.3 1.3
 5.4
 -0.8
 2.3
1.5
 2.4
 1.5
 3.2
32 LOC4324952 5'-3' exoribonuclease 3 4324952 Os01g0872700 3.3 3.2
 3.4
 1.3
-0.8
 2.1
0.8
 1.6
0.0
 1.8
0.9
 0.6
0.5
33 LOC4346337 puromycin-sensitive aminopeptidase-like 4346337 OSNPB_080562700 3.3 4.5
 2.1
 0.7
 1.6
0.9
 2.9
 3.7
1.0
 0.1
34 LOC4324478 sec-independent protein translocase protein TATC, chloroplastic-like 4324478 OSNPB_010501700 3.3 2.9
 3.7
 0.9
 0.6
-0.1
 0.4
 1.6
 2.9
35 LOC4339629 uncharacterized LOC4339629 4339629 Os05g0565500 3.3 2.8
 3.7
2.1
0.5
 1.3
 0.7
 2.0
36 LOC4336085 CRM-domain containing factor CFM2, chloroplastic 4336085 Os04g0464800 3.3 3.9
1.7
 2.5
1.9
 1.4
 1.4
 2.9
37 LOC4324867 histone deacetylase HDT2 4324867 Os01g0909500 3.2 3.2
 3.2




38 LOC4325305 DNA polymerase eta 4325305 Os01g0757800 3.2 2.5
 3.9
 0.3
 0.9
 -0.6
 -0.2
 0.9
39 LOC4328457 ribosomal RNA large subunit methyltransferase I 4328457 Os02g0173700 3.2 1.7
 4.7
 0.1
 2.0
1.3
 1.8
40 LOC4341105 alpha-glucan water dikinase, chloroplastic 4341105 Os06g0498400 3.2 3.4
 3.0
 0.8
 3.7
3.4
 2.0
 2.1
0.6
 2.6
41 LOC4333103 glucose-6-phosphate 1-dehydrogenase, chloroplastic 4333103 Os03g0412800 3.2 2.9
 3.5
 1.5
0.4
 3.5
2.3
 1.0
-0.5
 2.2
0.3
 2.1
0.7
42 LOC4336393 protein disulfide isomerase pTAC5, chloroplastic 4336393 Os04g0514400 3.2 2.4
 4.0
 3.1
 4.7
2.9
 1.4
 2.0
 4.9
43 LOC4344819 histone-lysine N-methyltransferase ATXR3 4344819 Os08g0180100 3.2 4.7
 1.6
 0.2
 0.6
0.6
 2.1
 2.3
2.0
 1.2
0.3
44 LOC4331244 probable cytosolic oligopeptidase A 4331244 Os02g0830100 3.2 4.3
 2.0
 -0.5
-0.9
 0.4
-0.1
 0.7
 0.9
0.3
 -0.1
45 LOC4325329 protein GIGANTEA-like 4325329 OSNPB_010182600 3.1 2.0
 4.3
 0.2
 1.0
0.8
 1.3
1.1
 1.1
0.6
46 LOC4335870 uncharacterized protein At4g26450 4335870 Os04g0431000 3.1 2.8
 3.5




47 LOC4343172 ABC transporter B family member 28 4343172 Os07g0464600 3.1 2.5
 3.8
 2.1
 2.3
 4.3
 0.9
 1.6
48 PHT4;1 probable anion transporter 1, chloroplastic 4326905 OSNPB_010279700 3.1 2.8
 3.4
 5.6
2.9
 3.3
2.7
 4.6
2.3
 2.7
1.7
 3.1
1.5
49 LOC4349978 DNA topoisomerase 2-binding protein 1-A 4349978 Os11g0191300 3.1 3.1
 3.0
 1.3
 1.9
 -0.2
 0.1
 0.8
-0.8
50 LOC112936032 pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like 112936032

3.8
 2.6
 0.3
 3.2
3.0
 3.8
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