Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332477   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 osa-r.5   4332477   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 osa-m.8   4332477   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 osa-u.4   4344396   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 ath-u.4   ADT2   arogenate dehydratase 2 
 gma-u.4   100787387   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 gma-u.4   100787759   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 sly-u.4   101251252   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 ppo-u.4   7469086   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 mtr-u.4   11412114   arogenate dehydratase 2 

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Top 50 coexpressed genes to 4332477 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1230   Biosynthesis of amino acids  5 219 4.02
 osa220   Arginine biosynthesis  2 34 2.63
 osa260   Glycine, serine and threonine metabolism  2 64 2.09
 osa630   Glyoxylate and dicarboxylate metabolism  2 76 -
 osa1200   Carbon metabolism  2 273 -

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osa:LOC4332477 (arogenate dehydratase/prephenate dehydratase 2, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332477
osa-r.5
for
4332477
osa-m.8
for
4332477
osa-u.4
for
4344396
ath-u.4
for
ADT2
gma-u.4
for
100787387
gma-u.4
for
100787759
sly-u.4
for
101251252
ppo-u.4
for
7469086
mtr-u.4
for
11412114
1 LOC4325930 probable mitochondrial-processing peptidase subunit beta, mitochondrial 4325930 Os01g0711100 5.5 5.9
 5.1
 -0.5





2 LOC4340880 BTB/POZ domain-containing protein At2g04740 4340880 Os06g0318200 4.5 4.9
 4.1
 1.0
 3.8
 1.6
 0.8
 1.5
 2.3
 1.3
3 LOC4337992 protein SLOW GREEN 1, chloroplastic 4337992 Os05g0182100 4.3 5.3
 3.2
 -0.1
 -0.0
 1.8
1.5
 0.1
-0.7
 -0.0
 0.8
-0.0
 3.0
4 LOC4331244 probable cytosolic oligopeptidase A 4331244 Os02g0830100 4.2 4.6
 3.7
 -0.2
 2.9
2.2
 2.4
1.9
 -0.4
-0.7
 1.5
 1.0
0.7
 2.6
5 LOC4329974 protein TonB 4329974 Os02g0614200 4.0 4.3
 3.7
 -0.3
 1.4
0.9
 0.7
-0.3
 -0.5
-1.2
 0.1
 0.6
 2.9
6 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 3.9 3.3
 4.6
 -0.4
 1.1
 1.3
1.1
 -0.5
-0.5
 0.4
 0.1
 3.4
7 LOC4333802 uncharacterized LOC4333802 4333802 Os03g0695500 3.9 3.2
 4.6
 -0.7
 1.0
 1.4
 -0.1
 -0.4
 0.1
 1.5
8 LOC4337697 acetylornithine aminotransferase, mitochondrial 4337697 Os05g0129100 3.9 2.7
 5.2
 0.6
-0.3
 1.9
 2.3
0.4
 -1.3
-1.4
 -1.0
 0.7
-1.2
 1.9
9 LOC4347749 serine/threonine-protein kinase STY46 4347749 Os09g0544300 3.9 4.1
 3.8
 0.3
0.2
 0.3
-0.2
 0.7
0.0
 -0.0
-0.1
 0.5
0.3
 0.7
0.5
 -0.1
-0.8
10 LOC4335654 uncharacterized LOC4335654 4335654 Os04g0386500 3.9 3.0
 4.7
 1.0
-1.1
 3.1
 0.2
0.0
 0.6
-1.0
 1.3
 0.9
0.7
 0.0
11 LOC4331865 uncharacterized LOC4331865 4331865 Os03g0185500 3.9 3.5
 4.3
 -0.1
 0.5
 -0.1
-0.6
 0.4
0.2
 -0.8
 1.4
 1.1
12 LOC4346015 psbP domain-containing protein 3, chloroplastic 4346015 Os08g0512500 3.9 4.0
 3.7
 0.3
 -0.5
 0.2
-1.4
 -0.4
-0.8
 -0.6
 -0.9
 -0.0
13 LOC4343846 mitochondrial import inner membrane translocase subunit TIM17-2 4343846 Os07g0604500 3.9 3.8
 3.9
 0.5
 0.3
0.2
 1.9
1.0
 -0.3
-0.6
 1.5
1.4
 1.8
1.5
 1.2
14 LOC4341010 mitogen-activated protein kinase 11-like 4341010 OSNPB_060367900 3.8 3.7
 3.9
 1.6
1.2
 0.2
-0.0
 1.0
0.7
 1.7
1.7
 0.6
0.0
 1.4
0.4
 1.1
0.3
15 LOC4333169 uncharacterized LOC4333169 4333169 Os03g0428800 3.7 4.0
 3.5
 0.0
 1.8
 0.5
 -1.6
 -0.1
 0.5
 -1.9
16 LOC4351989 protein RETICULATA-RELATED 1, chloroplastic 4351989 Os12g0283800 3.7 4.0
 3.5
 -0.0
 0.7
 1.2
0.8
 -1.0
-2.0
 -0.3
-1.2
 2.5
-1.4
 3.2
17 LOC4324952 5'-3' exoribonuclease 3 4324952 Os01g0872700 3.7 3.3
 4.2
 -1.4
 2.0
1.5
 2.0
1.3
 2.0
0.3
 2.0
0.7
 1.1
0.2
 2.9
0.4
18 LOC4325651 threonine synthase, chloroplastic 4325651 Os01g0693800 3.7 3.5
 3.8
 -0.5
-1.5
 3.2
-1.7
 3.4
2.3
 -1.0
-2.0
 -0.1
-0.8
 0.7
0.3
 1.4
1.2
19 LOC4332221 integrator complex subunit 9 homolog 4332221 Os03g0243200 3.7 3.3
 4.0
 -0.3
 2.1
 0.1
 1.4
 -0.2
 2.0
 0.5
20 LOC4343672 COMPASS-like H3K4 histone methylase component WDR5B 4343672 Os07g0572000 3.7 3.5
 3.8
 1.2
-0.2
 1.4
-0.3
 2.2
1.5
 0.5
0.3
 1.7
1.0
 0.2
-0.3
 3.4
2.6
21 LOC4351854 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4351854 Os12g0236900 3.7 3.8
 3.5
 1.6
 1.3
 3.4
2.4
 1.3
0.7
 0.6
 0.7
 3.4
22 LOC4331530 ATP phosphoribosyltransferase, chloroplastic-like 4331530 OSNPB_030134300 3.6 3.9
 3.3
 -0.7
 2.0
1.6
 2.0
0.8
 1.3
0.0
 -0.1
 0.6
-0.7
 3.1
-0.1
23 LOC4335637 small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial 4335637 Os04g0381600 3.5 4.7
 2.4
 1.2
 0.1
 0.2
-1.1
 0.4
-0.8
 1.3
 1.0
-0.4
 3.4
24 LOC4326311 ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like 4326311 OSNPB_010574500 3.5 2.3
 4.7
 -0.3
-0.6
 0.7
 1.5
1.2
 1.7
1.2
 0.6
-0.1
 2.3
 1.0
25 LOC4339682 malate dehydrogenase, mitochondrial 4339682 Os05g0574400 3.5 3.4
 3.6
 1.5
0.2
 2.2
1.3
 1.7
 1.3
 2.4
0.9
 1.1
0.8
 1.4
26 LOC4344847 polyadenylate-binding protein RBP45 4344847 Os08g0190200 3.5 3.7
 3.2
 0.4
-0.1
 3.6
3.2
 3.1
1.3
 0.7
0.6
 1.7
1.2
 0.8
0.3
 4.5
1.1
27 LOC4336462 mitochondrial intermembrane space import and assembly protein 40 homolog 4336462 OSNPB_040527700 3.4 3.0
 3.8
 2.0
 2.4
 1.3
 -1.8
 1.3
 1.4
 -0.3
28 LOC4334103 YTH domain-containing family protein 2 4334103 Os03g0748000 3.4 4.5
 2.3
 -0.3
-0.9
 2.0
-0.1
 1.0
0.8
 0.4
0.3
 0.3
 -0.9
-1.3
 0.6
29 LOC4337834 translocase of chloroplast 159, chloroplastic 4337834 Os05g0151400 3.4 4.1
 2.7
 -0.6
 0.4
 0.7
0.3
 -2.3
-2.5
 -0.9
-1.0
 1.6
0.8
 2.6
30 LOC4329676 NADPH-dependent pterin aldehyde reductase 4329676 Os02g0557700 3.4 3.2
 3.6
 1.0
 3.0
 -0.2
 -1.3
 0.9
 1.3
 0.1
31 LOC4349053 DEAD-box ATP-dependent RNA helicase 12-like 4349053 OSNPB_100503700 3.4 3.5
 3.3
 2.5
0.9
 3.1
1.3
 1.5
0.9
 -0.4
-0.7
 2.4
1.8
 1.9
1.3
 5.1
4.3
32 LOC4340893 UPF0061 protein AZOSEA38000 4340893 Os06g0320700 3.4 2.9
 3.8
 0.6
 2.6
 1.5
 -1.1
 1.9
-0.0
 1.5
 2.3
33 LOC4336738 uncharacterized LOC4336738 4336738 Os04g0576500 3.4 2.8
 3.9






34 LOC4342365 myb-like protein L 4342365 Os07g0139500 3.4 3.9
 2.8
 0.6
 -0.4
 -0.7
-0.9
 3.2
1.8
 1.2
 1.9
 0.9
35 LOC4323891 uncharacterized LOC4323891 4323891 Os01g0695200 3.4 4.9
0.9
 0.2
0.2
 0.8
0.4
 2.0
1.0
 1.9
 3.6
0.9
 -0.2
36 LOC4345438 phosphoglucan phosphatase LSF1, chloroplastic 4345438 Os08g0379300 3.4 4.6
 2.1
 0.4
 0.4
 1.8
0.8
 2.4
2.3
 -0.5
 0.7
 -0.1
37 LOC4351307 CBL-interacting protein kinase 14-like 4351307 OSNPB_120113500 3.4 3.5
 3.2
 0.6
0.3
 -0.6
-1.7
 0.2
0.2
 2.1
0.4
 0.9
-0.2
 1.3
1.0
 -0.1
-0.8
38 LOC4338414 rhodanese-like domain-containing protein 7 4338414 Os05g0323100 3.3 1.9
 4.7
 1.3
 0.6
 2.0
 -0.3
 -0.5
 0.0
 3.4
39 LOC4325633 uncharacterized protein YqeG 4325633 Os01g0796500 3.3 4.8
 1.8
 -1.0
 1.6
 1.4
 1.0
 2.1
-0.9
 1.2
1.1
 0.9
0.2
40 LOC4350492 zinc finger CCCH domain-containing protein 63-like 4350492 OSNPB_110472000 3.3 4.1
 2.4
 0.6
0.2
 -1.0
-1.4
 0.8
0.3
 3.7
1.5
 -1.4
 0.8
0.7
 -0.3
41 LOC4333458 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic 4333458 OSNPB_030617900 3.3 2.8
 3.8
 1.0
 1.8
 1.5
-0.1
 -0.1
-0.3
 1.6
 -0.2
 2.6
42 LOC4326612 probable aldo-keto reductase 1 4326612 Os01g0618100 3.3 2.9
 3.6
 -0.1
-0.7
0.4
0.1
 0.9
0.8
 0.8
-0.6
 0.2
-0.6
 1.5
-0.5
43 LOC4344457 GDP-mannose transporter GONST1 4344457 Os08g0107400 3.3 3.2
 3.4
 -0.5
 -0.3
 -0.2
-0.6
 -0.4
-0.4
 -0.4
 1.9
-1.1
 -1.0
44 LOC4345375 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 4345375 OSNPB_080360100 3.3 2.7
 3.8
 0.8
 -0.2
 1.6
 0.6
 -0.3
 1.0
1.0
 0.5
45 LOC4332435 uncharacterized LOC4332435 4332435 Os03g0279600 3.2 2.6
 3.9
 -1.0
 -0.4
 0.7
0.6
 -0.4
-1.4
 1.7
0.6
 1.0
 -0.5
46 LOC4324773 serine hydroxymethyltransferase 7 4324773 Os01g0874900 3.2 3.4
 3.1
 0.2
-1.2
 -0.1
-1.3
 0.7
0.4
 0.6
-0.0
 0.4
 1.9
1.8
 2.6
-0.5
47 LOC4346217 sorbitol dehydrogenase 4346217 Os08g0545200 3.2 2.3
 4.1
 -1.7
 1.5
 -0.3
-1.1
 0.6
-0.3
 0.3
 0.2
-0.9
 0.3
48 LOC4330474 carbamoyl-phosphate synthase small chain, chloroplastic-like 4330474 OSNPB_020708100 3.2 3.6
 2.8
 0.4
 4.4
 2.5
2.0
 2.5
1.6
 0.0
 1.6
1.0
 4.4
0.4
49 LOC4340227 E4 SUMO-protein ligase PIAL1 4340227 Os06g0164000 3.2 3.5
 2.9
 -0.7
 -0.7
-0.9
 3.3
2.7
 4.6
3.9
 0.7
 0.4
 1.5
0.1
50 LOC4341695 DNA-directed RNA polymerase 3B, chloroplastic 4341695 Os06g0652000 3.2 3.1
 3.3
 -0.9
-1.2
 2.6
2.4
 2.7
2.7
 1.4
1.3
 1.0
0.9
 3.0
2.9
 3.0
1.6
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