Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332626   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 osa-r.5   4332626   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 osa-m.8   4332626   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 ath-u.4   PPR2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100786610   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 gma-u.4   100813729   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sly-u.4   101254329   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sly-u.4   101247998   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 ppo-u.4   7471076   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 ppo-u.4   7468136   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 mtr-u.4   11419567   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 mtr-u.4   120577889   pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like 

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Top 50 coexpressed genes to 4332626 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  10 336 8.76
 osa3060   Protein export  3 49 3.82
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa4145   Phagosome  1 82 -
 osa4141   Protein processing in endoplasmic reticulum  1 224 -

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osa:LOC4332626 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332626
osa-r.5
for
4332626
osa-m.8
for
4332626
ath-u.4
for
PPR2
gma-u.4
for
100786610
gma-u.4
for
100813729
sly-u.4
for
101254329
sly-u.4
for
101247998
ppo-u.4
for
7471076
ppo-u.4
for
7468136
mtr-u.4
for
11419567
mtr-u.4
for
120577889
1 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 7.6 7.1
 8.1
 4.2
 5.2
 3.2
 2.2
 2.1
 0.9
0.6
 1.8
1.8
 3.8
 4.2
2 LOC4343528 peptide chain release factor PrfB1, chloroplastic 4343528 Os07g0546600 5.7 7.0
 4.4
 3.4
 4.6
 4.4
 3.1
 2.0
 1.0
 0.4
 3.4
 3.3
3 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 5.6 6.0
 5.2
 2.9
1.7
 3.9
3.7
 4.0
3.9
 1.9
0.5
 2.9
1.8
 1.6
-0.4
 2.0
1.7
 0.8
0.8
 1.6
0.8
4 LOC4352441 uncharacterized LOC4352441 4352441 Os12g0541500 5.5 5.8
 5.2
 4.1
 7.8
7.6
 6.6
6.1
 2.9
 3.3
 0.8
 1.5
 0.8
 3.0
5 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 5.3 5.9
 4.6
 2.5
 5.0
4.1
 5.4
3.9
 4.3
 3.4
 0.6
 2.1
 1.1
 2.3
6 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 5.2 5.3
 5.1
 1.9
 4.3
 4.0
 3.2
 2.4
 2.7
1.7
 2.3
1.9
 2.1
 3.0
7 LOC4334651 50S ribosomal protein L18, chloroplastic-like 4334651 OSNPB_030828100 5.1 6.3
 3.9
 2.4
 6.4
 5.8
 3.3
 6.7
 1.5
1.1
 1.4
1.3
 1.5
 2.1
8 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 5.0 4.9
 5.0
 1.8
 6.6
5.4
 5.1
5.0
 2.4
 1.6
 1.4
 2.6
 1.9
 2.6
9 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 5.0 6.3
 3.6
 4.0
 7.8
6.0
 5.0
4.2
 2.8
 4.1
 2.7
 2.4
 2.7
 2.6
10 LOC4334749 30S ribosomal protein S6 alpha, chloroplastic 4334749 Os03g0843400 4.9 5.8
 4.1
 1.9
 6.9
5.5
 7.8
5.4
 3.4
 2.8
 1.0
 3.9
 2.4
 2.6
11 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 4.9 5.1
 4.7
 4.8
 7.3
3.2
 5.0
2.7
 1.4
 2.0
 0.9
0.6
 2.4
1.6
 3.5
 4.3
12 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 4.9 4.9
 4.8
 2.9
 1.5
 1.9
 3.2
 3.6
 1.1
 3.0
 0.5
 0.8
13 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 4.8 4.9
 4.7
 4.5
 6.5
4.9
 6.5
5.4
 4.7
 4.2
 1.7
0.6
 3.2
2.1
 1.6
 2.3
14 LOC4325387 cell division protein FtsY homolog, chloroplastic 4325387 Os01g0958100 4.8 4.9
 4.7
 1.8
 2.3
 2.0
 3.8
 3.6
 2.9
 3.7
 1.5
 1.3
15 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 4.8 4.8
 4.8
 2.2
 5.8
4.1
 5.0
3.6
 1.8
 3.2
 0.8
 1.9
 1.5
 2.3
16 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 4.7 4.7
 4.8
 3.0
 4.9
3.7
 5.4
3.7
 3.4
 2.9
 1.2
 2.4
 2.6
 2.6
17 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 4.7 5.2
 4.2
 3.0
2.7
 4.7
4.1
 4.6
3.3
 3.6
3.3
 3.7
3.4
 1.3
1.1
 4.0
3.5
 1.5
 2.1
18 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 4.7 4.4
 5.0
 3.3
 5.1
1.8
 4.9
1.7
 2.8
 3.1
 1.9
0.7
 2.3
-0.4
 3.2
 2.9
19 LOC4326936 photosynthetic NDH subunit of subcomplex B 5, chloroplastic 4326936 Os01g0929100 4.7 6.6
 2.8
 -0.5
 1.6
 1.1
 1.0
 -0.4
 0.1
 -0.0
 1.2
 1.7
20 LOC4340929 uncharacterized LOC4340929 4340929 Os06g0332800 4.7 4.7
 4.7
 2.4
 4.4
4.3
 4.6
4.5
 2.9
 2.2
 0.9
0.2
 2.1
-0.1
 1.3
 1.8
21 LOC4334632 transcription termination/antitermination protein NusG 4334632 Os03g0825500 4.7 6.8
 2.6
 3.4
 2.9
 1.6
 3.9
 3.3
 2.2
 2.7
 1.0
 2.5
22 LOC4327084 pentatricopeptide repeat-containing protein DOT4, chloroplastic 4327084 Os01g0205200 4.7 5.3
 4.0
 3.1
 1.3
-0.7
 1.3
-0.6



1.9
 2.5
23 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 4.7 4.0
 5.3
 1.3
 1.0
 0.8
 2.8
 0.5
 1.0
0.5
 1.2
0.8
 1.2
 1.4
24 LOC4342438 RNA-binding protein CP33, chloroplastic 4342438 Os07g0158300 4.7 4.5
 4.8
 2.2
 6.9
4.3
 6.5
4.5
 2.9
 2.9
 2.1
1.4
 5.4
4.4
 1.4
1.1
 1.3
1.1
25 LOC4330582 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4330582 Os02g0725200 4.7 5.2
 4.2
 3.3
 2.1
 1.9
 2.4
 2.5
 0.4
 2.0
 2.1
 2.3
26 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 4.7 4.6
 4.8
 1.5
1.5
 7.3
 6.0
 2.3
1.7
 3.1
1.0
 2.5
0.9
 2.0
1.8
 1.0
 1.7
27 LOC4351050 peptide chain release factor APG3, chloroplastic 4351050 Os11g0657100 4.7 4.2
 5.1
 2.9
 2.1
0.7
 1.4
0.2
 3.7
 2.0
 -0.2
 -0.1
 0.5
 1.2
28 LOC4338877 DAR GTPase 3, chloroplastic 4338877 Os05g0430400 4.6 5.0
 4.2
 3.5
 3.9
0.5
 3.4
-0.1
 3.1
 0.1
 2.1
 1.7
 1.9
 1.9
29 LOC4332348 50S ribosomal protein L4, chloroplastic 4332348 Os03g0265400 4.6 4.5
 4.7
 3.2
 6.1
5.6
 6.1
5.3
 4.0
 3.5
 0.5
 2.5
 1.7
 1.6
30 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 4.6 5.0
 4.3
 2.4
 3.0
2.9
 2.8
1.6
 4.2
 3.3
 1.4
 4.1
 0.3
 1.9
31 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 4.6 4.0
 5.3
 2.1
 5.6
4.9
 4.3
3.4
 2.6
 3.5
 3.1
0.3
 2.6
2.5
 2.6
 2.5
32 LOC4336948 methionine aminopeptidase 1B, chloroplastic 4336948 Os04g0610500 4.6 5.1
 4.1
 4.0
 3.5
2.9
 2.6
2.5
 3.2
 2.2
 0.9
 1.5
 1.6
 1.4
33 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 4.6 3.9
 5.3








34 LOC4331815 ylmG homolog protein 2, chloroplastic 4331815 Os03g0178200 4.6 4.5
 4.6
 2.2
 4.5
4.0
 4.3
3.5
 3.3
 3.1
 -0.3
 3.6
 0.7
 1.6
35 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.5 6.2
 2.7
 1.8
 3.7
 1.8
 3.2
 2.1
 1.7
 2.9
 2.5
 2.4
36 LOC4342342 peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic 4342342 Os07g0133700 4.5 3.9
 5.1
 0.9
 1.8
 2.7
 2.2
 1.7
 1.0
 1.1
 0.6
 0.4
37 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 4.5 4.7
 4.2
 3.6
 4.0
3.3
 3.2
2.9
 2.3
 3.7
 1.7
 3.2
 2.7
 4.3
38 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 4.5 4.2
 4.7
 2.8
 6.1
 5.9
 4.3
3.1
 3.2
2.8
 3.3
1.4
 4.4
3.0
 2.3
 2.5
39 LOC4327541 50S ribosomal protein L34, chloroplastic 4327541 Os01g0805000 4.5 4.0
 5.0
 2.0
 6.0
5.6
 5.7
4.5
 3.3
 3.4
 -0.3
 2.2
 1.6
 2.3
40 LOC4334445 probable GTP-binding protein OBGC2 4334445 OSNPB_030799700 4.5 5.2
 3.8
3.8
2.0
 4.1
2.2
 3.0
 3.2
 2.1
 4.5
 2.7
 2.7
41 LOC4339930 uncharacterized LOC4339930 4339930 Os06g0116400 4.5 4.8
 4.1
 2.5
-0.6
 3.7
2.8
 4.3
1.7
 2.0
-0.2
 1.6
-0.1
 1.7
0.2
 2.7
1.0
 1.7
 1.0
42 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 4.5 4.6
 4.3
 4.5
 6.6
3.7
 6.3
2.8
 5.3
 3.9
 1.8
 1.9
 1.8
 1.8
43 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 4.4 4.5
 4.4
 2.5
1.9
 2.6
2.5
 1.8
1.6
 1.1
 2.2
 1.7
0.3
 2.3
0.6
 1.7
0.3
 1.8
0.7
44 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 4.4 5.8
 3.1
 2.9
0.9
 4.9
4.2
 4.0
3.7
 3.3
1.0
 3.2
1.3
 1.8
1.6
 3.4
2.5
 1.7
1.2
 2.6
1.9
45 LOC4324476 tyrosine--tRNA ligase, chloroplastic/mitochondrial 4324476 Os01g0500900 4.4 5.0
 3.8
 3.6
 5.6
5.6
 5.2
4.4
 3.5
 4.1
 2.3
 2.5
 1.7
0.8
 2.1
1.4
46 LOC4334251 cytochrome c biogenesis protein CCS1, chloroplastic-like 4334251 OSNPB_030769600 4.4 5.2
 3.6
 2.4
 4.6
 3.5
 2.5
 1.3
 1.3
 3.8
 3.0
 2.8
47 LOC4347821 cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 4347821 Os09g0556500 4.4 5.2
 3.6
 1.0
 3.4
3.4
 2.9
2.5
 2.4
 3.5
 3.2
 3.1
 4.0
 3.3
48 LOC4346032 transcription termination factor MTERF6, chloroplastic/mitochondrial 4346032 Os08g0515800 4.4 3.4
 5.3
 5.9
 6.1
5.0
 4.2
3.4
 3.2
 4.3
 1.5
 1.5
 0.9
 0.9
49 LOC4326553 dual-specificity RNA methyltransferase RlmN 4326553 Os01g0640800 4.4 4.7
 4.0
 1.0
 2.7
 2.0
 3.0
 2.3
 2.0
 1.5
 0.6
 0.8
50 LOC4324152 GTP-binding protein At2g22870 4324152 Os01g0732200 4.3 4.7
 3.9
 3.9
 3.6
2.0
 3.4
1.1
 3.1
 4.4
 2.0
1.2
 2.4
1.5
 1.8
 1.8
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