Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4332957   RNA-binding protein CP29B, chloroplastic 
 osa-r.5   4332957   RNA-binding protein CP29B, chloroplastic 
 osa-m.8   4332957   RNA-binding protein CP29B, chloroplastic 
 osa-u.4   4344001   29 kDa ribonucleoprotein A, chloroplastic 
 ath-u.4   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.4   CP29   chloroplast RNA-binding protein 29 
 gma-u.4   100812934   ribonucleoprotein At2g37220, chloroplastic-like 
 gma-u.4   100786275   RNA-binding (RRM/RBD/RNP motifs) family protein 
 sly-u.4   101255645   29 kDa ribonucleoprotein B, chloroplastic 
 sly-u.4   101245790   29 kDa ribonucleoprotein A, chloroplastic 
 ppo-u.4   18100185   RNA-binding protein CP29B, chloroplastic 
 ppo-u.4   7486483   RNA-binding protein CP29B, chloroplastic 
 mtr-u.4   11433272   29 kDa ribonucleoprotein A, chloroplastic 

close


Top 50 coexpressed genes to 4332957 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  6 336 4.14
 osa195   Photosynthesis  1 77 -
 osa3018   RNA degradation  2 112 -
 osa270   Cysteine and methionine metabolism  1 122 -
 osa500   Starch and sucrose metabolism  1 173 -

close


osa:LOC4332957 (RNA-binding protein CP29B, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4332957
osa-r.5
for
4332957
osa-m.8
for
4332957
osa-u.4
for
4344001
ath-u.4
for
AT2G37220
ath-u.4
for
CP29
gma-u.4
for
100812934
gma-u.4
for
100786275
sly-u.4
for
101255645
sly-u.4
for
101245790
ppo-u.4
for
18100185
ppo-u.4
for
7486483
mtr-u.4
for
11433272
1 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 10.2 8.6
 11.8
 7.4








2 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 9.8 10.1
 9.6
 6.1
0.9
 4.3
0.2
 4.8
1.4
 4.2
3.6
 5.3
4.8
 4.6
3.1
 3.1
1.1
 2.9
1.9
 6.7
3.4
 6.5
3.1
3 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 9.4 8.1
 10.8
 3.9
 3.1
 1.6
 5.8
4.7
 7.1
5.4
 3.6
 5.7
 2.7
0.9
 4.8
2.9
 4.6
2.4
4 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 9.2 10.1
 8.3
 3.9
 3.7
 6.2
 5.3
4.4
 6.7
4.9
 5.6
 3.6
 2.5
 4.9
 5.7
5 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 8.9 9.3
 8.6
 5.9
 7.1
 9.2
 9.7
4.6
 8.6
4.9
 4.7
 3.8
 3.6
 6.7
 5.0
6 LOC4349098 uncharacterized LOC4349098 4349098 Os10g0512500 8.9 7.9
 9.9
 5.6
 5.4
 5.1
 5.9
 6.0
 4.2
 5.0
 1.6
 4.0
 5.0
7 LOC4346938 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic 4346938 OSNPB_090382400 8.8 7.3
 10.3
 4.9
 3.1
 4.0
 3.7
 4.2
 5.0
 2.4
 2.7
 5.4
 6.2
8 LOC9269203 tRNase Z TRZ2, chloroplastic 9269203 Os09g0482680 8.7 7.8
 9.7
 3.8
0.3
 1.7
-0.6
 2.7
-0.9
 5.6
3.5
 6.0
5.3
 3.7
1.0
 4.3
0.5
 2.5
-0.5
 6.6
0.6
 5.3
0.4
9 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 8.0 7.8
 8.1
 4.7
4.6
 4.9
3.3
 6.6
2.4
 5.1
5.0
 7.0
5.9
 6.1
4.4
 5.9
3.6
 2.2
2.0
 6.0
5.6
 6.6
5.7
10 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 7.9 6.9
 8.9
 4.8
 3.7
 1.8
 4.0
2.1
 3.7
1.8
 2.8
 4.5
 2.4
 4.0
 3.2
11 LOC4332899 uncharacterized LOC4332899 4332899 Os03g0363400 7.8 7.1
 8.6
 4.1
 3.1
 3.3
 3.2
 4.1
 2.4
 2.6
 0.8
 1.3
 1.3
-0.6
12 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 7.7 6.5
 9.0
 5.5
0.4
 4.4
0.6
 5.4
1.5
 6.8
4.3
 7.0
4.3
 4.8
 2.7
 3.2
2.6
 5.1
3.7
 8.5
2.4
13 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 7.7 7.9
 7.5
 3.9
 3.1
 1.0
 4.6
2.2
 5.2
2.9
 2.5
 5.6
 2.9
-1.0
 6.6
-0.1
 2.2
14 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 7.7 8.9
 6.4
 6.0
4.6
 5.0
 8.5
 5.3
5.2
 5.1
4.2
 4.4
 5.1
 2.1
 3.3
 4.5
15 wsl3 white stripe leaf3 4348823 Os10g0462800 7.7 8.9
 6.4
 5.0
 4.8
 6.2
 5.7
4.0
 5.3
2.6
 5.6
 5.0
 3.0
 7.1
 4.4
16 LOC4328965 chloroplast processing peptidase 4328965 Os02g0267000 7.6 7.0
 8.1
 3.2
 3.2
 2.0
 5.3
3.0
 6.2
2.6
 5.4
 4.4
 2.2
1.2
 4.3
1.2
 4.4
17 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 7.5 7.7
 7.2
 2.9
 2.7
 2.4
 2.9
2.5
 3.6
2.8
 3.2
 3.3
 4.7
 6.0
 1.9
18 LOC4349608 elongation factor P 4349608 Os11g0116400 7.3 5.9
 8.7
 3.4
3.2
 5.1
 5.1
 2.8
2.8
 4.4
3.4
 4.6
 3.6
 3.2
 7.4
 2.8
19 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 7.1 6.5
 7.6
 8.0
 3.4
 3.4
 5.5
3.9
 5.3
3.5
 4.1
2.9
 4.0
2.6
 2.3
0.9
 5.1
0.9
 3.4
20 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 7.0 7.8
 6.3
 2.2
 1.7
 3.2
 4.5
 4.9
 3.3
 2.8
 1.4
 3.2
 3.0
21 LOC4331225 uncharacterized LOC4331225 4331225 Os02g0827600 7.0 5.9
 8.2
 3.1
 2.5
 4.2
 4.5
3.4
 4.2
3.3
 3.0
 1.5
 1.4
 3.7
 1.8
22 LOC4327479 cysteine synthase-like 4327479 Os01g0814800 7.0 5.9
 8.1
 3.5
 3.5
 5.7



1.8
 2.9
 7.3
23 LOC4340929 uncharacterized LOC4340929 4340929 Os06g0332800 7.0 8.0
 6.0
 3.6
 5.0
 3.3
 4.8
3.4
 3.6
3.2
 4.9
 13.2
 2.4
0.6
 4.1
1.1
 3.3
24 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 7.0 7.1
 6.8
 5.0
 2.3
 2.3
 3.5
 3.3
 2.5
 2.0
 3.0
 3.6
 3.9
25 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 7.0 6.4
 7.5
 6.5
 5.5
 4.8
 6.7
4.8
 7.3
6.6

3.7
 9.1
 5.3
26 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 6.9 6.1
 7.7
 4.0
 3.5
 3.5
 5.2
 5.7
 4.1
 5.4
 1.8
 2.8
 3.7
27 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 6.8 5.7
 8.0
 3.7
-0.0
 3.2
-1.0
 2.7
-0.2
 2.6
2.0
 2.8
1.4
 4.6
2.9
 3.2
1.0
 1.4
-0.2
 4.1
0.9
 2.1
0.8
28 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 6.7 6.3
 7.1
 3.5
 2.6
 3.0
 5.3
3.1
 4.7
3.3
 2.5
 3.5
 1.4
 2.2
 5.4
29 LOC4341808 twinkle homolog protein, chloroplastic/mitochondrial 4341808 Os06g0671700 6.6 7.0
 6.2
 2.9
 2.1
 2.2
 1.1
0.9
 1.1
0.6
 3.8
 1.0
 0.9
 2.3
 2.4
30 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 6.6 6.8
 6.3
 6.1
 3.5
1.5
 2.8
0.1
 4.5
 5.2
 2.3
1.5
 2.7
2.2
 2.3
2.2
 5.4
4.6
 3.3
31 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 6.6 5.4
 7.8
 3.1
 4.8
 3.3
 4.3
 4.3
 5.6
 4.4
 1.6
 3.1
 4.3
32 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 6.5 5.7
 7.3
 5.6
 4.5
3.6
 4.8
4.7
 4.9
4.7
 5.6
5.2
 5.2
 5.3
 1.0
 5.7
 5.8
33 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 6.5 6.6
 6.5
 4.8
 2.6
 2.2
 2.8
2.7
 2.3
2.2
 6.0
 4.4
 1.5
 2.7
 2.1
34 LOC4340109 single-stranded DNA-binding protein WHY1, chloroplastic 4340109 Os06g0145800 6.5 7.3
 5.7
 2.3
 2.7
2.5
 4.5
3.8
 5.4
4.0
 6.6
5.1
 6.2
 3.2
 2.5
1.0
 5.9
2.2
 3.7
1.5
35 wsl6 white stripe leaf6 9271571 OSNPB_050567300 6.5 6.5
 6.4
 4.5
 5.5
 5.2
 3.6
0.3
 3.1
0.3
 5.4
 5.5
 1.3
 4.9
 3.2
36 LOC4350988 GTPase Der 4350988 Os11g0638000 6.4 5.8
 7.1
 5.1
 4.1
 5.9
 9.5
 9.3
 3.8
 4.2
 1.2
 3.2
 2.6
37 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 6.4 7.1
 5.8
 5.5
 2.7
 3.4
 5.3
4.8
 5.2
5.2
 6.9
 6.0
 3.4
 6.3
 3.9
38 LOC4344001 29 kDa ribonucleoprotein A, chloroplastic 4344001 Os07g0631900 6.4 7.0
 5.8
 6.4
 12.2
 12.2
 19.7
 19.7
 7.1
 7.1
 8.1
 8.1
39 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 6.4 6.4
 6.4
 3.8
 3.7
 3.2
 3.0
 3.3
 3.7
 6.5
 1.8
0.5
 2.9
2.1
 2.7
40 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 6.4 6.4
 6.4
 5.4
 4.1
 3.3
 6.0
4.6
 5.4
5.1
 3.0
 4.2
 3.7
 6.7
 3.3
41 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 6.4 7.8
 4.9
 4.7
 3.9
 3.6
 3.4
3.2
 4.3
3.1
 3.5
 4.4
 1.5
 4.4
 3.1
42 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 6.3 5.6
 7.1
 0.9
 1.9
 2.5
 5.0
 4.6
 3.9
 1.6
 1.9
 4.0
 4.5
43 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 6.3 6.8
 5.9
 5.0
3.7
 5.1
 4.0
 4.8
3.8
 4.7
4.5
 3.0
 3.9
 2.8
 5.4
 2.9
44 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 6.2 6.4
 6.0
 5.4
2.8
 3.6
 1.5
 5.7
4.2
 5.0
4.0
 5.2
 6.6
 3.0
1.7
 4.0
2.8
 3.8
45 LOC4337506 30S ribosomal protein S17, chloroplastic-like 4337506 Os04g0691600 6.2 6.6
 5.8
 4.0

3.9
3.9
 3.9
3.6
 3.0
 6.4
 5.4
 6.6
 4.1
46 LOC4330763 50S ribosomal protein L29, chloroplastic 4330763 Os02g0754300 6.2 6.9
 5.5
 4.4
 5.5
 3.3
 5.3
5.0
 5.0
4.4
 3.7
2.8
 5.7
3.2
 4.0
1.2
 5.4
0.7
 4.1
47 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 6.1 6.2
 6.0
 4.8
 3.8
 3.6
 3.5
1.1
 2.8
0.5
 2.5
 2.8
 1.0
 2.4
 2.3
48 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 6.1 6.8
 5.3
 5.3
 6.1
 4.0
 3.5
3.3
 3.4
3.1
 4.7
 5.6
 2.1
-0.1
 3.8
1.7
 2.5
49 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 6.1 6.2
 6.0
 3.2
1.2
 5.9
1.8
 6.1
1.8
 2.6
-0.2
 2.7
-0.2
 1.5
 2.9
 2.2
 3.2
 0.3
0.0
50 LOC4326542 uncharacterized tRNA/rRNA methyltransferase MRA_3618 4326542 Os01g0742000 6.1 8.6
2.6
 2.0
 3.7
 3.2
 3.3
 3.7
 2.8
 2.8
 3.9
 3.8
The preparation time of this page was 1.6 [sec].