Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4333342   uncharacterized LOC4333342 
 osa-r.5   4333342   uncharacterized LOC4333342 
 osa-m.8   4333342   uncharacterized LOC4333342 
 ath-u.4   PIFI   post-illumination chlorophyll fluorescence increase 
 gma-u.4   100790141   uncharacterized LOC100790141 
 gma-u.4   100818459   protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic 
 sly-u.4   101260209   uncharacterized LOC101260209 
 ppo-u.4   7470544   uncharacterized LOC7470544 
 mtr-u.4   11429342   protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic 

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Top 50 coexpressed genes to 4333342 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  4 35 6.06
 osa730   Thiamine metabolism  2 22 3.01
 osa860   Porphyrin metabolism  1 42 -
 osa4016   MAPK signaling pathway - plant  1 158 -
 osa1240   Biosynthesis of cofactors  3 248 -

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osa:LOC4333342 (uncharacterized LOC4333342) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4333342
osa-r.5
for
4333342
osa-m.8
for
4333342
ath-u.4
for
PIFI
gma-u.4
for
100790141
gma-u.4
for
100818459
sly-u.4
for
101260209
ppo-u.4
for
7470544
mtr-u.4
for
11429342
1 LOC4332353 uncharacterized LOC4332353 4332353 Os03g0265900 8.8 8.6
 8.9
 0.6
 2.9
2.6
 3.9
3.3
 2.5
0.5
 1.8
-0.2
 5.2
-0.1
2 LOC4326932 bifunctional nuclease 1-like 4326932 OSNPB_010702000 8.0 7.8
 8.2





3 LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 7.2 5.9
 8.5
 3.9
2.5
 4.7
2.2
 4.9
4.6
 5.0
3.5
 5.4
3.8
 5.5
2.9
4 LOC4330000 two-component response regulator-like PRR1 4330000 OSNPB_020618200 7.1 5.7
 8.6
 1.0
 2.8
1.3
 3.8
2.1
 1.7
0.2
 0.4
 2.0
2.0
5 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 6.9 7.3
 6.4
 2.0
 0.7
 0.9
 1.2
 2.1
 1.4
6 LOC4344001 29 kDa ribonucleoprotein A, chloroplastic 4344001 Os07g0631900 6.6 7.7
 5.6
 1.2
0.5
 2.2
2.2
 3.3
3.0
 4.0
0.5
 1.8
0.4
 2.8
7 LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like 4345779 Os08g0463900 6.3 6.2
 6.3
 2.2
 1.0
 -0.1
 3.7
 1.7
 1.4
8 LOC4327616 RING-H2 finger protein ATL74 4327616 Os01g0822800 6.2 5.0
 7.4
 -0.4
-0.8
 1.9
1.3
 2.1
1.7
 -0.5
 2.4
1.4
 1.0
0.7
9 LOC4350698 adagio-like protein 3 4350698 OSNPB_110547000 6.2 5.7
 6.6
 2.0
 2.4
2.0
 3.3
2.9
 2.9
 1.9
1.0
 4.2
10 LOC4326442 light-regulated protein, chloroplastic-like 4326442 OSNPB_010102900 6.2 6.8
 5.5
 8.5
 3.6
3.2
 4.1
3.0
 2.1
 3.0
 5.8
11 LOC4331855 uncharacterized LOC4331855 4331855 Os03g0184100 6.2 6.5
 5.8
 0.9
 2.9
2.3
 3.7
3.0
 2.7
 1.8
0.7
 4.2
12 LOC4333341 uncharacterized LOC4333341 4333341 6.1 5.3
 6.8





13 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 6.1 6.7
 5.4
 5.9
 3.1
 3.1
 2.9
2.9
 1.2
 6.6
14 LOC4332686 uncharacterized LOC4332686 4332686 Os03g0322600 6.0 5.0
 7.0
 -0.5
 0.7
-0.4
 -0.0
-1.1
 2.4
 1.5
 1.8
15 LOC4329586 ribonuclease J 4329586 Os02g0539600 6.0 7.4
 4.5
 0.8
 2.2
2.1
 3.8
3.0
 3.4
 0.9
-0.4
 3.6
-0.2
16 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 5.9 5.3
 6.5
 -0.6
 2.3
0.6
 3.1
1.8
 0.2
 0.5
0.4
 2.5
17 LOC4337388 chaperone protein dnaJ C76, chloroplastic 4337388 Os04g0675400 5.7 5.7
 5.8
 3.9
 3.0
2.4
 5.5
3.9
 3.6
 0.7
 7.7
18 LOC4336846 UV-B-induced protein At3g17800, chloroplastic 4336846 Os04g0596300 5.7 5.0
 6.3
 4.2
 0.9
0.5
 1.9
1.8
0.8
 1.2
19 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 5.6 7.0
 4.2
 1.7
 1.6
1.2
 2.2
1.6
 4.3
 1.6
0.6
 -0.2
-0.7
20 LOC4333169 uncharacterized LOC4333169 4333169 Os03g0428800 5.6 6.0
 5.3
 6.0
 2.2
 3.8
 4.6
 2.0
 3.3
21 LOC4326391 transcription factor PCL1-like 4326391 OSNPB_010971800 5.5 4.9
 6.1
 1.0
0.3
 2.0
1.0
 2.5
1.0
 -0.3
 1.0
0.8
 2.1
22 LOC9269734 lysine-specific demethylase JMJ30 9269734 Os08g0508500 5.5 4.8
 6.1
 0.8
 2.6
2.4
 3.6
2.6
 1.4
 1.2
 1.4
23 LOC4324652 uncharacterized LOC4324652 4324652 Os01g0221500 5.4 4.8
 5.9
 2.1
 1.2
0.1
 1.3
1.0
 6.7
-0.5
 -0.1
 2.8
24 LOC4324116 uncharacterized LOC4324116 4324116 Os01g0687300 5.2 6.4
 4.0





25 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 5.2 4.4
 6.0
 4.3
 3.5
2.7
 4.7
3.0
 2.6
 2.3
1.7
 3.5
0.3
26 LOC4330886 thioredoxin-like 3-1, chloroplastic 4330886 OSNPB_020774100 5.0 7.0
5.1
 0.7
0.4
 1.2
0.9
 4.6
 0.4
 4.4
27 LOC4347674 two-component response regulator-like PRR95 4347674 OSNPB_090532400 5.0 5.6
 4.4
 1.8
0.4
 4.3
3.8
 4.7
3.9
 3.8
3.7
 1.0
0.8
 3.9
-0.3
28 LOC4342509 uncharacterized LOC4342509 4342509 Os07g0170200 4.9 3.5
 6.4
 7.3
 0.3
0.2
 1.2
0.8
3.9
2.1
 2.3
29 LOC4345611 chaperonin-like RBCX protein 1, chloroplastic 4345611 Os08g0425200 4.9 4.7
 5.1
 6.9
 2.9
2.8
 4.5
3.7
 3.7
 4.0
 5.0
30 LOC4333719 phosphomethylpyrimidine synthase, chloroplastic 4333719 Os03g0679700 4.8 5.4
 4.3
 3.6
 2.2
1.1
 2.2
1.4
 4.3
 1.2
0.9
 1.0
31 LOC4348520 uncharacterized LOC4348520 4348520 Os10g0389500 4.8 4.5
 5.2
 0.9
 2.9
2.3
 3.7
3.0
 2.7
 1.8
0.7
 4.2
32 LOC4324158 heat stress transcription factor C-1b-like 4324158 OSNPB_010733200 4.8 4.6
 5.0
2.4
1.6
 2.3
1.6
 1.9
 1.6
 1.8
33 LOC4335654 uncharacterized LOC4335654 4335654 Os04g0386500 4.7 4.7
 4.7
 4.1
 2.4
2.1
 3.3
2.7
 1.5
 1.4
0.8
 3.0
34 LOC4325329 protein GIGANTEA-like 4325329 OSNPB_010182600 4.6 3.1
 6.1
 2.0
 3.4
2.8
 3.6
2.6
 3.8
2.7
 1.5
0.9
35 LOC4338807 thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic 4338807 Os05g0417200 4.6 5.7
 3.5
 0.5
 -0.5
 1.8
 2.6
 1.2
 1.3
36 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 4.5 5.1
 3.9
 1.5
1.2
 1.6
1.2
 2.4
1.7
 3.8
 0.5
-0.1
 0.9
-0.1
37 LOC4337512 uncharacterized LOC4337512 4337512 Os04g0692200 4.5 4.0
 5.1
 1.9
 1.2
0.8
 0.8
0.6
 4.6
 1.1
 0.5
0.5
38 LOC4336393 protein disulfide isomerase pTAC5, chloroplastic 4336393 Os04g0514400 4.5 3.7
 5.3
 1.4
 3.2
0.5
 3.7
1.9
 2.3
 2.0
 6.7
39 LOC4347421 uncharacterized LOC4347421 4347421 Os09g0485800 4.4 3.2
 5.6
0.6
 1.3

1.7
40 LOC4345848 flavanone 3-dioxygenase 2-like 4345848 Os08g0480200 4.4 3.6
 5.2
1.6
1.4
 1.5
1.3
 1.9
1.4
 1.6
1.5
 1.4
0.4
41 LOC4352660 serine/threonine-protein kinase SAPK9-like 4352660 OSNPB_120586100 4.4 4.1
 4.7
 2.0
1.3
 2.8
2.5
 2.4
2.3
 3.6
2.0
 1.2
0.0
 2.1
1.9
42 LOC4343652 chaperonin-like RbcX protein 2, chloroplastic 4343652 Os07g0569600 4.4 3.3
 5.4
 1.9
 1.7
1.0
 2.1
1.5
 2.4
1.7
 0.7
0.3
 -0.2
43 LOC4349444 uncharacterized LOC4349444 4349444 Os10g0569000 4.3 3.0
 5.7
 2.1
 0.2
0.1
 1.2
0.1
 2.7
 1.4
 -0.2
44 LOC4332570 chaperone protein DnaJ 4332570 Os03g0300600 4.3 2.9
 5.8
 3.5
0.7
 3.5
2.6
 3.6
2.6
 3.4
2.3
 1.9
1.3
 5.5
45 LOC4341038 phosphomannomutase/phosphoglucomutase 4341038 Os06g0476300 4.3 3.3
 5.3
 7.8
 2.6
 4.6
 1.6
 1.2
 0.5
46 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 4.3 4.0
 4.7
 -1.2
 1.3
0.8
 2.1
1.4
 2.2
 1.4
 1.9
47 LOC4331549 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic 4331549 Os03g0137300 4.3 3.8
 4.8
 3.1
 0.4
-0.3
 0.7
0.3
 3.6
 2.3
1.5
 0.7
48 LOC4324947 uncharacterized LOC4324947 4324947 Os01g0872100 4.3 6.3
 2.2





49 LOC4334387 probable zinc metalloprotease EGY1, chloroplastic 4334387 OSNPB_030792400 4.3 5.9
 2.6
 1.0
 1.0
-0.1
 2.4
0.6
 2.1
 2.0
 4.1
50 LOC4333802 uncharacterized LOC4333802 4333802 Os03g0695500







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