Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4333719   phosphomethylpyrimidine synthase, chloroplastic 
 osa-r.5   4333719   phosphomethylpyrimidine synthase, chloroplastic 
 osa-m.8   4333719   phosphomethylpyrimidine synthase, chloroplastic 
 ath-u.4   THIC   thiaminC 
 gma-u.4   100786478   phosphomethylpyrimidine synthase, chloroplastic 
 gma-u.4   100787350   phosphomethylpyrimidine synthase, chloroplastic 
 sly-u.4   THIC   thiamine biosynthesis protein ThiC 
 ppo-u.4   7468579   phosphomethylpyrimidine synthase, chloroplastic 
 ppo-u.4   18095058   phosphomethylpyrimidine synthase, chloroplastic 
 mtr-u.4   25490814   phosphomethylpyrimidine synthase, chloroplastic 

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Top 50 coexpressed genes to 4333719 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  3 35 4.26
 osa730   Thiamine metabolism  1 22 -
 osa195   Photosynthesis  1 77 -
 osa500   Starch and sucrose metabolism  1 173 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4333719 (phosphomethylpyrimidine synthase, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4333719
osa-r.5
for
4333719
osa-m.8
for
4333719
ath-u.4
for
THIC
gma-u.4
for
100786478
gma-u.4
for
100787350
sly-u.4
for
THIC
ppo-u.4
for
7468579
ppo-u.4
for
18095058
mtr-u.4
for
25490814
1 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 8.5 8.7
 8.2
 7.5
 4.1
3.9
 6.9
4.5
 9.5
 1.9
0.7
 2.0
1.7
 1.9
-0.0
2 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 8.3 9.2
 7.3
 3.4
 -0.5
 -0.9
 1.1
 0.2
 1.5
 1.1
3 LOC4343262 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 4343262 Os07g0489800 8.2 8.2
 8.2
 2.0
 0.3
-0.1
 0.3
-0.1
 -0.0
 1.1
 0.2
 -0.0
4 LOC4332353 uncharacterized LOC4332353 4332353 Os03g0265900 7.7 8.9
 6.5
 1.9
 2.1
1.6
 2.8
1.8
 3.3
0.9
 1.8
-0.5
 2.8
-0.4
 1.2
0.4
5 LOC4345611 chaperonin-like RBCX protein 1, chloroplastic 4345611 Os08g0425200 7.4 6.4
 8.3
 3.7
 2.2
1.5
 3.0
2.8
 1.8
 1.4
 2.7
 1.2
6 LOC4342192 photosynthetic NDH subunit of lumenal location 3, chloroplastic 4342192 Os07g0105600 7.0 6.3
 7.6
 3.9
 0.6
0.2
 0.3
-0.5
 0.3
 1.4
 0.8
 1.0
7 LOC4329586 ribonuclease J 4329586 Os02g0539600 6.5 7.0
 6.0
 4.2
 2.6
2.5
 4.3
4.0
 3.4
 2.5
2.0
 2.3
1.7
 2.2
0.2
8 LOC9269734 lysine-specific demethylase JMJ30 9269734 Os08g0508500 6.4 6.2
 6.5
 4.7
 1.7
1.0
 2.4
2.1
 2.7
 1.6
 -0.1
 0.4
9 LOC4326932 bifunctional nuclease 1-like 4326932 OSNPB_010702000 6.2 7.0
 5.3






10 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 5.9 7.1
 4.8
 2.3
 2.4
1.9
 2.8
1.7
 0.6
 1.4
0.9
 1.2
1.0
 0.8
11 LOC4333720 tankyrase-1 4333720 Os03g0679800 5.9 9.0







12 LOC4330886 thioredoxin-like 3-1, chloroplastic 4330886 OSNPB_020774100 5.8 8.6
3.1
 0.4
0.3
 0.8
0.1
 3.6
 1.1
 1.2
 1.5
13 LOC4337388 chaperone protein dnaJ C76, chloroplastic 4337388 Os04g0675400 5.7 6.2
 5.3
 5.4
 1.4
0.6
 3.3
3.2
 3.7
 0.5
 1.4
 0.8
14 LOC4330883 uncharacterized LOC4330883 4330883 Os02g0773500 5.7 6.4
 5.1






15 LOC4350698 adagio-like protein 3 4350698 OSNPB_110547000 5.5 6.0
 5.0
 2.6
 2.1
1.3
 4.0
2.8
 5.2
 0.9
0.8
 2.1
1.4
 0.5
16 LOC4330000 two-component response regulator-like PRR1 4330000 OSNPB_020618200 5.5 6.3
 4.7
 4.1
 1.8
0.7
 3.7
2.3
 1.7
0.6
 0.7
 0.5
 0.8
0.8
17 LOC4352254 putative pumilio homolog 7, chloroplastic 4352254 Os12g0493900 5.5 5.7
 5.2
0.2
-0.6
 0.3
0.2
 -0.4
-1.5
 -0.1
-0.9
 -0.3
-0.6
18 LOC4325154 aspartic proteinase-like 4325154 Os01g0290000 5.5 4.8
 6.1
 1.8
0.8
 0.8
0.5
 2.0
1.2
 1.6
1.4
 2.0
1.6
 1.1
1.1
 1.1
0.6
19 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 5.4 5.3
 5.4
 1.5
 2.9
 3.9
 -0.2

1.0
20 LOC4336948 methionine aminopeptidase 1B, chloroplastic 4336948 Os04g0610500 5.3 6.7
 4.0
 4.0
 1.7
1.0
 1.7
1.3
 1.9
 1.0
 1.7
 1.0
21 LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 5.3 4.5
 6.0
 3.6
2.7
 1.9
1.6
 3.5
3.2
 3.1
2.1
 0.7
-0.2
 1.7
0.8
 0.7
0.1
22 LOC4331333 phosphoglucan phosphatase DSP4, amyloplastic 4331333 Os03g0107800 5.0 4.8
 5.2
 4.4
 1.3
0.2
 2.6
1.3
 3.7
0.8
 2.4
1.9
 3.4
1.6
 0.5
23 LOC4333341 uncharacterized LOC4333341 4333341 4.8 4.3
 5.4






24 LOC4333342 uncharacterized LOC4333342 4333342 Os03g0586500 4.8 5.4
 4.3
 3.6
 1.4
1.1
 2.2
2.2
 4.3
 0.9
 1.2
 1.0
25 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 4.8 5.7
 3.8
 0.3
 1.0
1.0
 2.3
1.3
 0.1
 2.0
 1.6
 1.2
26 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 4.7 5.3
 4.1
 0.0
-0.2
 1.1
0.4
 2.4
1.8
 2.5
 1.0
-0.5
 0.2
-0.0
 0.6
-1.0
27 LOC4334171 alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic 4334171 Os03g0758100 4.7 6.0
 3.3
 4.3
 1.3
1.2
 3.8
2.5
 5.3
3.2
 1.5
0.7
 0.2
0.2
 1.3
0.4
28 LOC4344001 29 kDa ribonucleoprotein A, chloroplastic 4344001 Os07g0631900 4.5 5.5
 3.5
 3.5
2.1
 2.8
2.6
 7.0
5.6
 4.0
0.9
 1.7
0.8
 1.9
1.5
 0.8
29 LOC4341032 chaperone protein dnaJ C76, chloroplastic 4341032 Os06g0474800 4.5 3.6
 5.3
0.9
 0.7
1.2
 1.8
30 LOC112936032 pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like 112936032 4.5 6.7
1.2
 1.3
 3.5
 4.5
 1.8
0.7
 1.5
1.3
 1.9
31 LOC4331855 uncharacterized LOC4331855 4331855 Os03g0184100 4.4 4.5
 4.3
 4.7
 1.4
1.0
 2.9
1.9
 4.4
 1.8
0.9
 1.8
1.4
 0.6
32 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 4.3 5.5
 3.2
 1.4
 1.9
 1.9
 1.7
 1.6
 1.4
 0.3
33 LOC4325329 protein GIGANTEA-like 4325329 OSNPB_010182600 4.3 4.6
 3.9
 2.2
 2.2
1.9
 6.5
3.1
 4.1
3.8
 0.5
0.2
 0.4
-0.6
34 LOC4352660 serine/threonine-protein kinase SAPK9-like 4352660 OSNPB_120586100 4.3 4.2
 4.3
 1.4
1.4
 2.5
1.7
 3.1
2.7
 3.1
0.5
 0.6
0.2
 1.0
-0.2
 1.1
0.3
35 LOC4326612 probable aldo-keto reductase 1 4326612 Os01g0618100 4.2 4.7
 3.7
-0.0
-0.8
 0.0
-0.6
 3.2
0.4
 0.9
0.8
 1.0
0.2
 0.6
-0.4
36 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 4.2 3.9
 4.5
 4.7
 2.3
 5.0
 3.7
0.7
 1.5
 0.8
 1.3
37 LOC4324058 NF-X1-type zinc finger protein NFXL2 4324058 Os01g0158900 4.1 3.2
 5.1
 -1.5
 0.1
-0.6
 -0.8
-1.0
 -0.0
 -0.4
 -0.5
 -0.1
38 LOC4324947 uncharacterized LOC4324947 4324947 Os01g0872100 4.1 5.6
 2.7






39 LOC4345334 phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like 4345334 OSNPB_080344600 4.1 4.9
 3.3
 -0.7
-1.7
 0.8
-0.1
 2.4
1.6
 -0.2
-1.0
 -0.2
-0.4
 0.5
0.0
 -0.1
-0.4
40 LOC4348520 uncharacterized LOC4348520 4348520 Os10g0389500 4.1 4.0
 4.1
 4.7
 1.4
1.0
 2.9
1.9
 4.4
 1.8
0.9
 1.8
1.4
 0.6
41 LOC4345848 flavanone 3-dioxygenase 2-like 4345848 Os08g0480200 4.1 4.2
 3.9
0.5
0.3
 0.9
0.3
 2.7
2.7
 1.6
0.5
 -0.2
-0.2
 1.2
0.1
42 LOC4352612 probable inactive purple acid phosphatase 1 4352612 Os12g0576600 4.0 3.4
 4.7
 0.3
-0.6
 1.4
0.4
 1.7
1.4
 1.3
0.6
 0.2
-0.2
 0.5
-0.9
 1.3
1.2
43 LOC4327616 RING-H2 finger protein ATL74 4327616 Os01g0822800 4.0 4.3
 3.7
 0.7
-0.1
 1.4
0.6
 3.3
1.4
 1.7
 0.8
0.6
 1.0
0.8
 -0.0
-0.2
44 LOC4332570 chaperone protein DnaJ 4332570 Os03g0300600 4.0 3.0
 4.9
 1.9
1.1
 2.2
2.1
 4.5
2.9
 3.3
0.9
 0.2
-0.6
 1.2
0.4
 0.6
45 LOC4328182 protein LOW PSII ACCUMULATION 3, chloroplastic 4328182 Os02g0129300 3.9 5.8
 2.0
 1.7
 0.1
 -1.4
 -0.0
 1.3
 0.7
 1.7
46 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 3.9 5.4
 2.3
 3.9
 1.6
0.3
 1.5
1.2
 2.6
 2.3
1.9
 1.7
1.6
 1.6
-0.3
47 LOC4337691 uncharacterized LOC4337691 4337691 Os05g0128100 3.8 3.7
 4.0
 1.3
 3.0
2.5
 4.2
2.9
0.7
 1.7
 0.9
48 LOC4324334 glycine-rich RNA-binding protein 4, mitochondrial 4324334 Os01g0916600 3.8 3.0
 4.7
 0.8
0.4
 0.9
0.9
 3.5
0.9
 1.5
1.4
 0.7
0.3
 0.6
0.5
 -0.8
-0.9
49 LOC4340908 AT-hook motif nuclear-localized protein 10 4340908 Os06g0326000 3.8 3.0
 4.7
 -0.3
-0.6
 0.4
-0.3
 1.3
1.0
 0.8
0.1
 -0.2
-1.0
 0.4
-0.4
 -0.6
50 LOC4334682 uncharacterized LOC4334682 4334682 Os03g0832900 3.8 2.4
 5.2
 0.1
 -0.0
-0.6
 -0.5
-0.7
 -0.5
 0.9
0.8
 -0.0
-0.5
 0.2
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