Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   9269534   ribosome-binding ATPase YchF 
 osa-r.5   9269534   ribosome-binding ATPase YchF 
 osa-m.8   9269534   ribosome-binding ATPase YchF 
 ath-u.4   AT1G56050   GTP-binding protein-like protein 
 gma-u.4   100500688   ribosome-binding ATPase YchF 
 sly-u.4   101259460   ribosome-binding ATPase YchF 
 ppo-u.4   7490749   ribosome-binding ATPase YchF 
 mtr-u.4   120577672   ribosome-binding ATPase YchF 

close


Top 50 coexpressed genes to 9269534 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  14 336 14.24
 osa970   Aminoacyl-tRNA biosynthesis  8 70 11.74
 osa1240   Biosynthesis of cofactors  7 233 6.25
 osa860   Porphyrin metabolism  6 42 9.50
 osa3018   RNA degradation  2 112 -

close


osa:LOC9269534 (ribosome-binding ATPase YchF) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
9269534
osa-r.5
for
9269534
osa-m.8
for
9269534
ath-u.4
for
AT1G56050
gma-u.4
for
100500688
sly-u.4
for
101259460
ppo-u.4
for
7490749
mtr-u.4
for
120577672
1 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 8.5 7.4
 9.6
 4.9
 4.9
 4.9
2.7
 4.9
2.2
 4.7
2 LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like 4334537 OSNPB_030811100 8.3 7.1
 9.5
 2.9
 4.6
4.1
 6.1
 4.4
 2.2
3 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 8.3 6.9
 9.7
 2.5
 4.1
3.6
 5.2
 2.9
 5.1
4 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 8.0 5.6
 10.5
 2.3
 5.2
4.8
 3.3
 3.4
 3.4
5 LOC4349608 elongation factor P 4349608 Os11g0116400 7.8 6.1
 9.5
 7.3
 3.9
3.3
 4.2
 4.5
 6.2
6 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 7.6 6.1
 9.1
 4.6
 3.1
3.0
 5.3
 2.5
0.9
 1.6
7 ASL2 Albino Seedling Lethal2 4328932 Os02g0259600 7.6 6.7
 8.6
 5.2
 4.9
3.4
 4.3
 3.8
2.0
 1.7
8 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 7.4 6.0
 8.8
 3.7
1.1
 4.8
4.7
 3.7
2.2
 3.6
1.8
 3.7
1.1
9 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 7.2 5.0
 9.5
 5.0
 3.7
3.1
 4.7
 2.5
 2.9
10 LOC4334131 50S ribosomal protein L6, chloroplastic 4334131 Os03g0751400 7.2 4.5
 9.9
 2.5
 4.1
3.6
 5.2
 2.9
 5.1
11 LOC4347821 cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 4347821 Os09g0556500 7.0 5.7
 8.2
 9.8
 4.2
3.5
 4.7
 3.8
 2.8
12 LOC4335962 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic 4335962 Os04g0445700 6.9 6.4
 7.4
 3.3
 3.5
2.2
 7.5
2.7
 0.9
0.4
 2.3
1.3
13 LOC4337539 photosynthetic NDH subunit of lumenal location 5, chloroplastic 4337539 Os05g0103200 6.8 6.8
 6.8
 6.0
 4.2
2.6
 7.2
 4.3
3.2
 3.2
14 LOC4334555 50S ribosomal protein L17, chloroplastic 4334555 Os03g0815400 6.8 5.0
 8.6
 2.6
 3.4
3.1
 4.6
3.9
 3.9
2.0
 2.7
15 LOC4330763 50S ribosomal protein L29, chloroplastic 4330763 Os02g0754300 6.8 4.5
 9.0
 0.9
 4.7
3.5
 3.8
2.6
 2.7
1.6
 1.7
16 LOC4338460 uncharacterized LOC4338460 4338460 Os05g0337400 6.8 5.5
 8.1
 4.5
 7.5
6.0
 5.8
 4.0
 4.1
17 LOC4330767 histidine--tRNA ligase, chloroplastic/mitochondrial 4330767 Os02g0754700 6.7 7.6
 5.8
 4.0
-0.6
 5.1
 7.0
 3.7
 1.8
18 LOC4333233 30S ribosomal protein S5, chloroplastic 4333233 Os03g0452300 6.6 5.0
 8.2
 3.3
 4.2
2.4
 5.2
 3.9
 2.5
19 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 6.5 5.2
 7.8
 7.7
5.4
 4.0
3.7
 5.0
 4.1
 3.3
20 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 6.5 5.8
 7.1
 6.0
 4.5
2.8
 4.7
 2.9
 4.9
21 LOC4330964 uncharacterized LOC4330964 4330964 Os02g0788500 6.4 6.2
 6.6
 3.1
 2.3
1.6
 2.4
 2.4
1.8
 1.7
22 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 6.4 5.8
 7.0
 5.8
 4.3
3.3
 4.3
 2.4
1.9
 2.3
23 LOC4336951 oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic-like 4336951 OSNPB_040610800 6.4 5.3
 7.4
 4.7
 3.1
 3.9
 1.5
 2.4
24 LOC4332771 uroporphyrinogen decarboxylase 2, chloroplastic-like 4332771 OSNPB_030337600 6.4 5.8
 6.9
 5.3
 2.2
1.4
 6.1
 3.2
2.8
 2.3
25 LOC4352460 nucleoside diphosphate kinase 2, chloroplastic 4352460 Os12g0548300 6.3 5.2
 7.4
 8.3
 4.3
3.7
 4.6
3.6
 5.2
 2.0
26 LOC9267409 uncharacterized protein YnbB 9267409 Os04g0636300 6.3 4.7
 7.8
5.5
2.6
 5.8
 4.2
 1.6
27 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 6.2 4.9
 7.5
 4.7
 1.7
 6.1
 1.9
1.9
 3.9
28 LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial 4328118 Os02g0121000 6.2 4.9
 7.4
 4.6
 5.4
4.1
 4.4
 2.1
 3.1
29 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 6.1 3.8
 8.5
 5.4
 2.7
 5.4
 3.5
 3.0
30 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 6.1 5.4
 6.7
 2.0
 3.4
1.8
 3.0
 2.8
 3.7
31 LOC4330025 lysine--tRNA ligase, chloroplastic/mitochondrial 4330025 Os02g0623500 6.1 4.7
 7.4
 7.0
 5.7
 6.5
 3.4
 5.3
32 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 6.1 4.0
 8.2
 6.2
 3.9
2.7
5.0
 4.0
33 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 6.0 5.2
 6.7
 7.0
 3.1
 5.3
 2.1
 3.8
34 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 6.0 6.1
 5.8
 9.3
3.3
 4.6
4.3
 5.0
2.4
 3.6
3.1
 5.4
2.3
35 LOC4341789 14 kDa zinc-binding protein 4341789 Os06g0667500 5.8 5.2
 6.4
 2.8
-0.6
 4.2
-0.6
 2.9
-1.7
 2.6
1.6
 0.4
-0.7
36 LOC4324565 peptide deformylase 1A, chloroplastic-like 4324565 OSNPB_010555800 5.8 4.0
 7.6
 4.6
 2.6
 1.7
 4.3
 4.5
2.0
37 LOC4334651 50S ribosomal protein L18, chloroplastic-like 4334651 OSNPB_030828100 5.8 4.5
 7.0
 4.3
 4.6
 2.7
 3.0
2.3
 4.8
38 LOC4331225 uncharacterized LOC4331225 4331225 Os02g0827600 5.8 4.6
 6.9
 5.6
 3.7
2.0
 1.8
 3.0
 1.4
39 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 5.7 4.8
 6.6
 3.6
 3.2
1.2
 3.3
 3.5
2.5
 3.5
40 LOC4327912 peptidyl-prolyl cis-trans isomerase A1 4327912 Os01g0284700 5.6 4.7
 6.6
 6.7
 4.9
1.8
3.1
 4.4
3.2
41 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 5.6 5.9
 5.3
 10.2
6.6
 3.7
3.6
 6.7
5.0
 4.7
3.5
 4.1
3.4
42 LOC4340044 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 4340044 Os06g0136800 5.6 5.8
 5.4
 2.9
 3.6
2.3
 4.3
 3.4
 2.8
43 LOC4350686 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like 4350686 OSNPB_110544800 5.6 4.6
 6.5
 6.1
 5.7
3.8
 7.2
 2.1
 4.6
44 RA1 rice albino1 4339847 Os06g0103600 5.5 4.6
 6.5
 6.7
 4.5
 3.8
 1.4
1.4
 2.9
45 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 5.5 3.7
 7.4
 3.2
 3.8
2.9
 7.3
 3.1
 1.7
46 LOC4330852 soluble inorganic pyrophosphatase 6, chloroplastic 4330852 Os02g0768600 5.5 5.3
 5.7
 6.8
 2.7
0.7
 4.2
2.9
 3.2
2.6
 3.6
47 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 5.5 4.1
 6.9
 3.9
 2.7
2.7
 3.2
 3.8
 3.0
48 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 5.5 4.5
 6.4
 5.7
0.8
 1.6
-2.7
 2.2
 2.2
 1.2
0.3
49 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 5.5 4.9
 6.1
1.0
 1.1
 1.0
50 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 5.5 5.1
 5.8
 3.4
2.7
 3.4
2.5
 5.7
3.2
 4.0
1.6
 4.3
The preparation time of this page was 1.4 [sec].