Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4334814   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 osa-r.5   4334814   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 osa-m.8   4334814   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ath-u.4   OTP70   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   112997711   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 sly-u.4   101243676   pentatricopeptide repeat-containing protein 
 ppo-u.4   7476750   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 mtr-u.4   25489190   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 

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Top 50 coexpressed genes to 4334814 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa740   Riboflavin metabolism  2 20 3.09
 osa790   Folate biosynthesis  1 27 -
 osa920   Sulfur metabolism  1 40 -
 osa620   Pyruvate metabolism  1 100 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4334814 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4334814
osa-r.5
for
4334814
osa-m.8
for
4334814
ath-u.4
for
OTP70
gma-u.4
for
112997711
sly-u.4
for
101243676
ppo-u.4
for
7476750
mtr-u.4
for
25489190
1 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 4.1 4.9
 3.3




2 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 4.0 5.3
 2.6
 0.7
 2.3
1.4
 1.3
 0.4
 1.2
-1.0
3 LOC107277281 pentatricopeptide repeat-containing protein At4g01030, mitochondrial 107277281 Os05g0586900 3.8 5.9
4.5
 1.7
1.3
 0.6
 1.6
 0.5
4 LOC4337331 ubiquitin-conjugating enzyme E2 28 4337331 Os04g0667800 3.4 -0.3
 7.1
 -0.3
-0.6
 0.8
0.5
 2.2
0.5
 0.4
0.3
 0.4
0.1
5 LOC4340243 uncharacterized LOC4340243 4340243 Os06g0166200 3.4 3.4
 3.4
 2.1

2.9
 1.7
6 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 3.3 4.1
 2.5




7 LOC4324854 pentatricopeptide repeat-containing protein At3g46790, chloroplastic 4324854 Os01g0848300 3.3 4.4
 2.2
 2.0
 3.1
2.5
 5.6
 2.8
 0.9
8 LOC4342473 uncharacterized LOC4342473 4342473 Os07g0164200 3.3 0.9
 5.6
 0.6
 0.5
-0.2
 -0.7
 0.2
 1.0
9 LOC4334612 dnaJ homolog subfamily B member 5 4334612 Os03g0822800 3.3 3.0
 3.5
 1.5
 2.0
0.9
 0.8
 -0.3
 1.8
10 LOC4342622 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 4342622 Os07g0191500 3.2 3.6
 2.8
 3.6
 1.3
 4.5
 3.3
 2.9
11 LOC4327722 pentatricopeptide repeat-containing protein At5g55740, chloroplastic 4327722 Os01g0607800 3.2 4.7
1.7
 3.2
 1.0
 3.4
 3.7
12 wsl4 white stripe leaf4 4329703 Os02g0565400 3.1 3.8
 2.5




13 LOC4336283 2-alkenal reductase (NADP(+)-dependent) 4336283 Os04g0497000 3.0 1.7
 4.3
 0.8
0.7
 1.0
0.6
 0.6
-0.1
 1.2
0.9
 0.8
0.4
14 LOC4329761 transcription termination factor MTEF1, chloroplastic 4329761 Os02g0577501 3.0 4.9
 1.1
 2.3
1.0
 2.2
2.1
 1.8
0.1
 1.6
1.0
 2.6
-0.5
15 LOC4329021 probable lactoylglutathione lyase, chloroplastic 4329021 Os02g0280500 3.0 3.7
 2.2
 -0.1
-1.3
 2.0
1.7
 1.7
1.2
 1.8
1.7
 2.2
0.1
16 LOC4329382 uncharacterized LOC4329382 4329382 Os02g0489500 3.0 4.0
 1.9
 0.6
 2.9
 0.6
 2.4
 1.5
17 LOC4334460 FAD synthetase, chloroplastic-like 4334460 OSNPB_030801700 2.9 3.3
 2.6
 1.0
-0.2
 0.7
 1.0
 0.4
 0.1
18 LOC4336530 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like 4336530 OSNPB_040539000 2.9 3.7
 2.1
 0.8
 0.5
-0.3
 0.3
 0.8
0.2
 0.4
19 LOC4336394 pentatricopeptide repeat-containing protein At3g09040, mitochondrial 4336394 Os04g0514500 2.9 0.5
 5.2
 3.6
 5.6
 4.3

20 LOC4329542 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4329542 Os02g0529900 2.8 2.4
 3.3




21 LOC4348990 WAT1-related protein At3g02690, chloroplastic 4348990 Os10g0493900 2.8 4.0
 1.6
 1.3
 0.7
0.3
 -0.9
 1.9
 0.9
0.7
22 LOC4349040 uncharacterized LOC4349040 4349040 Os10g0501900 2.8 0.3
 5.3




23 LOC4336073 protein FLOURY 1 4336073 Os04g0463200 2.8 4.2
1.8
 1.7
1.4
 2.0
 0.4
 0.8
0.8
24 LOC4330307 uncharacterized LOC4330307 4330307 Os02g0677600 2.7 2.4
 3.0
 1.6
 0.4
-0.2
 -0.1
 -0.0
 0.1
25 LOC4346032 transcription termination factor MTERF6, chloroplastic/mitochondrial 4346032 Os08g0515800 2.7 2.7
 2.7
 0.7
 3.3
2.1
 1.1
 1.4
 0.7
26 LOC4333316 membrane metalloprotease ARASP, chloroplastic 4333316 Os03g0579000 2.7 3.6
 1.8
 0.9
-0.1
 2.4
1.4
 0.4
 0.7
0.6
 1.6
27 LOC4335458 protein WHAT'S THIS FACTOR 1 4335458 Os04g0312100 2.7 3.2
 2.3
 2.5
 0.7
 4.4
 3.4
 2.1
28 LOC4326466 thylakoid lumenal 17.9 kDa protein, chloroplastic 4326466 Os01g0102300 2.7 3.5
 1.9
 1.1
 0.8
0.7
 0.7
 0.1
 1.0
29 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 2.7 3.6
 1.7
 1.0
 1.7
0.1
 1.0
 1.4
 1.1
30 LOC4332243 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 4332243 Os03g0247000 2.7 2.2
 3.1
 0.8
0.6
 2.6
2.4
 2.1
1.3
 1.3
0.6
 1.5
0.4
31 LOC4351696 uncharacterized LOC4351696 4351696 Os12g0189700 2.6 2.9
 2.3
1.6
1.5
 2.5
32 LOC4331123 glutathionyl-hydroquinone reductase YqjG 4331123 Os02g0814800 2.6 3.0
 2.3
 0.2
 2.2
 0.9
 0.4
 -0.4
33 LOC4330370 50S ribosomal protein L18 4330370 Os02g0689700 2.6 3.9
1.1
 3.0
2.8
 0.3
 1.0
0.7
 1.3
34 LOC4333992 ribosomal RNA small subunit methyltransferase E 4333992 Os03g0729700 2.6 3.1
 2.1
 0.9
 0.9
 1.0
 1.4
 1.5
35 LOC4336148 uncharacterized LOC4336148 4336148 Os04g0475300 2.6 3.3
 1.9
 1.3
 1.3
 -0.4
 0.5
36 LOC4344622 uncharacterized LOC4344622 4344622 Os08g0137300 2.6 3.7
 1.5
 0.1
-0.3
 0.2
-0.1
 0.7
0.2
 0.2
 -0.3
-0.6
37 LOC4346632 ycf20-like protein 4346632 Os09g0287500 2.6 2.0
 3.2
0.6
0.4
 0.4
 1.2
 0.3
38 LOC4331065 PAP-specific phosphatase HAL2-like 4331065 Os02g0805500 2.6 2.8
 2.3
 -0.4
 2.3
1.5
 2.9
-0.3
 1.2
0.5
 1.8
-0.2
39 LOC4341126 uncharacterized LOC4341126 4341126 Os06g0505400 2.6 1.8
 3.3
 1.4
 1.3
-0.4
 0.7
 0.9
0.4
 1.3
0.4
40 LOC4329443 gamma carbonic anhydrase-like 1, mitochondrial 4329443 Os02g0508000 2.6 -0.9
 6.0
 -0.8
-2.0
 -0.4
-1.0
 -0.1
 0.0
-0.9
 -0.2
41 LOC4328431 peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic 4328431 Os02g0168700 2.6 2.3
 2.9
 -0.9
 1.3
 1.0
 -0.1
 1.2
42 LOC4336429 protein PELPK1 4336429 Os04g0521900 2.6 -0.3
 5.5




43 LOC4338730 uncharacterized LOC4338730 4338730 Os05g0401200 2.6 3.7

0.4
 -0.8
 1.0
 0.2
44 LOC4343212 uncharacterized protein At4g14100 4343212 Os07g0475000 2.6 3.8





45 LOC4351682 histone deacetylase 14 4351682 Os12g0182700 2.5 4.0
 1.0
 2.0
 -0.8
 -0.9
 0.6
 1.5
46 LOC4343902 DNA-directed RNA polymerases II, IV and V subunit 9A 4343902 Os07g0615800 2.5 -0.3
 5.4




47 LOC4339017 probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 4339017 OSNPB_050460600 2.5 1.6
 3.5
 0.5
 0.4
 1.1
 0.4
 -0.8
48 LOC4340014 uncharacterized LOC4340014 4340014 Os06g0132300 2.5 2.1
 3.0




49 LOC4327311 uncharacterized RNA methyltransferase BH0687 4327311 Os01g0193600 2.5 2.7
 2.3
 1.5
 1.8
 0.3
 1.1
 1.7
50 LOC4350519 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 4350519 Os11g0482400 2.5 2.2
 2.8
2.3
2.1
 2.9
 0.9
 1.0
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