Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4335473   pentatricopeptide repeat-containing protein At1g60770 
 osa-r.5   4335473   pentatricopeptide repeat-containing protein At1g60770 
 osa-m.8   4335473   pentatricopeptide repeat-containing protein At1g60770 
 ath-u.4   AT1G60770   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100801616   pentatricopeptide repeat-containing protein At1g60770 
 sly-u.4   101257127   pentatricopeptide repeat-containing protein At1g60770 
 ppo-u.4   18100411   pentatricopeptide repeat-containing protein At1g60770 
 ppo-u.4   7462981   pentatricopeptide repeat-containing protein At1g60770 
 ppo-u.4   112327811   pentatricopeptide repeat-containing protein At1g60770-like 
 mtr-u.4   25501457   pentatricopeptide repeat-containing protein At1g60770 

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Top 50 coexpressed genes to 4335473 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  16 336 18.81
 osa3008   Ribosome biogenesis in eukaryotes  5 86 5.99
 osa240   Pyrimidine metabolism  1 63 -
 osa260   Glycine, serine and threonine metabolism  1 67 -
 osa230   Purine metabolism  1 91 -

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osa:LOC4335473 (pentatricopeptide repeat-containing protein At1g60770) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4335473
osa-r.5
for
4335473
osa-m.8
for
4335473
ath-u.4
for
AT1G60770
gma-u.4
for
100801616
sly-u.4
for
101257127
ppo-u.4
for
18100411
ppo-u.4
for
7462981
ppo-u.4
for
112327811
mtr-u.4
for
25501457
1 LOC4333814 pescadillo homolog 4333814 Os03g0699200 10.0 9.1
 11.0
 4.3
 5.6
4.4
 2.6
 6.6
4.8
 2.9
2.0
 5.8
4.9
 2.6
2 LOC4340389 nucleolar GTP-binding protein 1 4340389 Os06g0195900 8.4 8.9
 7.8
 4.9
0.2
 4.2
1.9
 4.2
0.9
 5.7
4.7
 2.7
2.1
 6.1
4.9
 4.4
4.4
3 LOC4332841 probable nucleolar protein 5-2 4332841 Os03g0350300 8.2 8.5
 7.9
 6.0
4.7
 4.6
4.4
 7.0
3.2
 5.9
4.6
 3.8
3.7
 5.1
4.1
 3.7
3.3
4 LOC4329913 uncharacterized LOC4329913 4329913 Os02g0604100 7.7 6.8
 8.6
 2.1
 2.4
1.0
 3.9
 2.2
2.0
 1.0
0.3
 2.2
1.2
 2.7
5 LOC4335547 40S ribosomal protein S8-like 4335547 Os04g0349500 7.6 7.2
 7.9
 3.3
2.9
 4.8
4.5
 4.7
4.5
 5.4
5.3
 2.4
2.2
 5.1
4.6
 4.6
3.5
6 LOC4342225 nucleolar GTP-binding protein 1 4342225 Os07g0110200 7.3 6.4
 8.2
 4.9
0.2
 4.2
1.9
 4.2
0.9
 5.7
4.7
 2.7
2.1
 6.1
4.9
 4.4
4.4
7 LOC4325277 uncharacterized LOC4325277 4325277 Os01g0679000 7.3 4.2
 10.3
 1.6
 4.0
1.3
 0.2
 3.1
 1.1
 3.3
 2.4
8 LOC4334820 transmembrane protein 70, mitochondrial 4334820 Os03g0853800 7.1 6.6
 7.6
 3.2
 3.5
 5.1
 2.3
1.8
 1.0
0.4
 2.6
2.5
 4.4
9 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 7.0 5.0
 9.0
 6.6
 1.5
-1.5
 1.5
 3.6
2.2
 2.7
0.7
 3.6
1.5
 4.3
2.9
10 LOC4338984 uncharacterized protein At2g39795, mitochondrial 4338984 Os05g0456000 7.0 5.3
 8.6






11 LOC4336317 40S ribosomal protein S11 4336317 Os04g0502300 6.9 4.8
 8.9
 3.3
3.1
 2.3
2.0
 3.4
3.2
 4.2
3.8
 1.9
1.6
 3.8
3.5
 3.4
3.2
12 LOC4341966 eukaryotic initiation factor 4A-1-like 4341966 OSNPB_060701100 6.8 6.8
 6.9
 2.7
1.0
 5.9
5.8
 3.1
2.3
 2.9
2.7
 1.3
1.2
 2.6
2.5
 3.9
3.0
13 LOC4329423 60S ribosomal protein L35 4329423 Os02g0503400 6.8 6.0
 7.6
 2.4
1.9
 4.1
2.9
 5.3
3.4
 5.6
4.2
 2.2
2.2
 6.0
4.0
 2.6
2.5
14 LOC4339580 50S ribosomal protein L21, mitochondrial 4339580 Os05g0557800 6.8 7.1
 6.5
 8.9
 2.7
2.4
 4.1
 3.5
 2.0
 2.7
 5.2
15 LOC4345281 GMP synthase [glutamine-hydrolyzing] 4345281 Os08g0326600 6.7 5.3
 8.1
 3.1
 4.5
3.9
 5.5
 7.5
 2.5
 6.7
 2.9
16 LOC4339555 uncharacterized LOC4339555 4339555 Os05g0554500 6.6 6.6
 6.6
 2.9
 0.2
-0.5
 4.9
 1.7
 0.3
 2.2
 2.0
17 LOC4349032 uncharacterized LOC4349032 4349032 Os10g0500500 6.6 5.7
 7.5
 5.2
 2.2
 6.0
 3.0
 -0.5
 2.7
 5.3
18 LOC4352003 coilin 4352003 Os12g0288801 6.4 5.2
 7.5
 3.7
 0.6
0.3
 2.0
-2.8
 2.6
1.0
 2.8
0.3
 2.6
1.4
 1.9
19 LOC4343835 ras GTPase-activating protein-binding protein 2 4343835 Os07g0603100 6.4 5.6
 7.2






20 LOC4329042 40S ribosomal protein S3a-like 4329042 Os02g0287000 6.4 6.5
 6.2
 3.8
3.6
 5.2
4.5
 4.6
2.0
 5.7
4.9
 2.8
2.2
 5.0
4.7
 5.0
4.2
21 LOC4333384 nucleolar protein 14 4333384 Os03g0598200 6.4 6.4
 6.3
 3.3
 2.8
2.6
 5.7
 3.9
 2.4
 3.8
 2.9
2.4
22 LOC4331780 nuclear pore complex protein NUP96 4331780 Os03g0172000 6.3 7.8
 4.7
 2.4
 3.0
 4.5
 2.6
 -0.7
 3.3
 2.3
23 LOC4331821 tubulin--tyrosine ligase-like protein 12 4331821 Os03g0179000 6.3 5.4
 7.2
 5.4
 2.9
 4.9
 3.4
 0.1
 3.6
 2.3
24 LOC4346044 30S ribosomal protein S16-2, chloroplastic/mitochondrial 4346044 Os08g0517900 6.3 4.6
 7.9
 3.3
-0.8
 2.5
2.1
 4.2
 1.0
0.8
 1.1
-0.9
 1.3
1.2
 2.4
-0.7
25 LOC4345976 60S ribosomal protein L31 4345976 Os08g0505300 6.3 5.5
 7.0
 2.9
2.2
 4.6
2.6
 2.9
0.3
 5.4
4.8
 2.9
2.3
 4.7
4.2
 3.1
3.0
26 LOC4331976 elongator complex protein 5 4331976 Os03g0201700 6.2 5.0
 7.4
 1.0
 1.5
0.2
 1.4
 2.3
1.1
 1.4
0.2
 2.5
0.8
 1.9
27 LOC4341246 50S ribosomal protein L1 4341246 Os06g0546400 6.1 5.1
 7.2
 5.8
 3.2
2.2
 6.4
 3.5
 2.1
 3.3
 4.9
28 LOC9272589 60S ribosomal protein L4 9272589 Os03g0796501 6.1 5.8
 6.5
 4.0
3.1
 4.0
2.6
 7.1
6.1
 6.0
4.6
 2.2
1.7
 5.9
4.2
 5.9
4.8
29 LOC4332840 probable nucleolar protein 5-2 4332840 Os03g0350100 6.1 5.2
 7.1
 6.0
4.7
 4.6
4.4
 7.0
3.2
 5.9
4.6
 3.8
3.7
 5.1
4.1
 3.7
3.3
30 LOC4336205 elongator complex protein 3-like 4336205 OSNPB_040484900 6.1 4.7
 7.6
 0.9
 3.0
2.9
 -0.2
 1.8
 -0.4
 2.4
 2.3
31 LOC4326362 DDB1- and CUL4-associated factor 13 4326362 Os01g0238900 6.1 5.8
 6.4
 4.9
 0.7
 3.7
 2.5
2.1
 2.4
2.0
 3.0
1.8
 3.0
32 LOC4329857 actin cytoskeleton-regulatory complex protein PAN1 4329857 Os02g0595400 6.1 6.0
 6.1
 2.5
 2.7
2.3
 4.1
 2.7
2.4
 2.9
2.7
 1.9
1.8
 3.3
33 LOC4339145 60S ribosomal protein L24 4339145 Os05g0486700 5.9 5.6
 6.3
 3.3
3.3
 4.5
3.4
 3.6
3.4
 4.1
3.5
 1.7
1.6
 4.5
3.1
 3.4
2.4
34 LOC9268245 60S ribosomal protein L10a 9268245 Os08g0558000 5.9 5.0
 6.9
 4.8
3.9
 3.6
3.5
 6.9
4.5
 5.0
4.2
 3.2
2.7
 4.9
3.7
 5.1
4.2
35 LOC4342874 prohibitin-2, mitochondrial 4342874 Os07g0262200 5.8 5.3
 6.4
 3.3
2.7
 6.7
3.6
 5.2
 4.0
3.6
 3.3
1.5
 4.8
4.4
 4.1
3.8
36 LOC4345009 60S ribosomal protein L7-3 4345009 Os08g0234000 5.8 5.8
 5.8
 4.6
4.4
 4.4
3.7
 5.2
5.1
 5.5
5.3
 2.3
2.2
 4.5
4.4
 4.6
3.6
37 LOC4346021 uncharacterized LOC4346021 4346021 Os08g0513300 5.8 4.1
 7.4
 5.3
1.7
 2.7
1.7
 5.5
 4.2
 1.1
 4.0
 5.9
38 LOC4329627 exosome complex component RRP45A 4329627 Os02g0550700 5.8 5.1
 6.5
 4.8
1.1
 3.0
1.5
 3.5
 3.1
0.7
 0.7
0.7
 3.0
1.9
 3.6
0.0
39 LOC4338485 40S ribosomal protein S7-like 4338485 OSNPB_050346300 5.7 6.1
 5.3
 3.6
2.7
 5.2
4.2
 4.7
3.9
 4.9
4.0
 2.8
1.9
 4.7
3.8
 3.4
2.1
40 LOC4341790 glycine cleavage system H protein 2, mitochondrial 4341790 Os06g0667600 5.7 5.0
 6.4
 2.3
 2.2
1.5
 3.7
 1.7
1.2
 2.1
1.7
 1.7
0.9
 0.7
41 LOC4333079 elongation factor 1-delta 2-like 4333079 OSNPB_030406200 5.7 4.1
 7.2
 1.7
1.4
 3.3
 4.8
3.5
 4.1
3.8
 1.8
1.8
 4.2
3.8
 4.0
2.8
42 LOC4328826 60S ribosomal protein L11-like 4328826 Os02g0235600 5.7 5.4
 5.9
 4.1
4.1
 4.0
3.8
 5.0
2.9
 4.5
4.1
 2.3
2.3
 3.8
3.7
 4.6
3.6
43 LOC4330946 60S ribosomal protein L35a-1 4330946 Os02g0785800 5.6 4.9
 6.3
 3.8
2.9
 3.5
3.3
 5.0
3.2
 4.7
4.7
 2.7
2.3
 3.9
3.9
 2.4
2.0
44 LOC4323991 probable ribosome biogenesis protein RLP24 4323991 Os01g0514000 5.6 3.8
 7.4
 3.4
 2.9
2.6
 1.6
 4.3
 2.3
 4.0
 1.7
45 LOC4346171 glycine--tRNA ligase, mitochondrial 1 4346171 Os08g0538000 5.6 6.3
 4.8
 1.4
 2.1
 5.3
-0.3
 4.1
0.8
 1.8
0.3
 3.6
0.9
 3.9
0.1
46 LOC4344865 nucleolin 1-like 4344865 OSNPB_080192900 5.6 5.6
 5.6
 3.1
0.2
 5.1
4.9
 4.6
 5.8
4.5
 3.5
2.8
 5.3
4.1
 3.5
47 LOC4333306 60S ribosomal protein L13-2 4333306 Os03g0576700 5.5 4.2
 6.9
 3.4
2.0
 4.3
4.3
 5.5
4.4
 6.3
4.0
 2.6
1.9
 5.2
4.3
 3.7
3.3
48 LOC4325375 ketol-acid reductoisomerase, chloroplastic-like 4325375 Os01g0652600 5.5 7.6
2.3
 4.7
1.9
 1.9
-0.9
 3.3
1.3
 0.8
-0.6
 3.0
1.2
 0.4
49 LOC4332852 nuclear/nucleolar GTPase 2-like 4332852 OSNPB_030352400 5.5 5.8
 5.3
 4.3
 4.0
2.7
 0.8
 2.3
 0.5
 2.3
 3.1
1.7
50 LOC4332557 U2 small nuclear ribonucleoprotein B''-like 4332557 OSNPB_030298800 5.4 4.4
 6.5






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