Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4336393   protein disulfide isomerase pTAC5, chloroplastic 
 osa-r.5   4336393   protein disulfide isomerase pTAC5, chloroplastic 
 osa-m.8   4336393   protein disulfide isomerase pTAC5, chloroplastic 
 ath-u.4   PTAC5   plastid transcriptionally active 5 
 gma-u.4   100808436   protein disulfide isomerase pTAC5, chloroplastic 
 gma-u.4   100810184   protein disulfide isomerase pTAC5, chloroplastic 
 sly-u.4   101263249   protein disulfide isomerase pTAC5, chloroplastic 
 ppo-u.4   7496064   protein disulfide isomerase pTAC5, chloroplastic 
 mtr-u.4   11431277   protein disulfide isomerase pTAC5, chloroplastic 

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Top 50 coexpressed genes to 4336393 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3060   Protein export  1 57 -
 osa240   Pyrimidine metabolism  1 63 -
 osa1232   Nucleotide metabolism  1 80 -
 osa1240   Biosynthesis of cofactors  1 248 -

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osa:LOC4336393 (protein disulfide isomerase pTAC5, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4336393
osa-r.5
for
4336393
osa-m.8
for
4336393
ath-u.4
for
PTAC5
gma-u.4
for
100808436
gma-u.4
for
100810184
sly-u.4
for
101263249
ppo-u.4
for
7496064
mtr-u.4
for
11431277
1 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 5.7 3.5
 8.0
 4.6
 5.4
 1.8
 1.2
1.1
 2.5
 6.4
2 LOC4332686 uncharacterized LOC4332686 4332686 Os03g0322600 5.7 3.8
 7.6
 3.2
 0.5
0.3
 3.5
1.6
 2.5
 2.6
 3.2
3 LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like 4345779 Os08g0463900 5.5 3.4
 7.6
 2.4
 -0.5
 0.3
 1.8
 3.0
 2.2
4 PHT4;1 probable anion transporter 1, chloroplastic 4326905 OSNPB_010279700 5.3 3.2
 7.4
 3.5
0.4
 4.3
4.0
 2.4
2.1
 1.9
0.7
 3.8
2.8
 0.3
0.3
5 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 4.7 4.6
 4.7
 3.7
 1.9
 1.2
 1.0
 1.7
 4.8
6 LOC4333342 uncharacterized LOC4333342 4333342 Os03g0586500 4.5 3.7
 5.3
 1.4
 3.7
3.2
 1.9
0.5
 2.3
 2.0
 6.7
7 LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 4.4 4.3
 4.5
 2.4
1.7
 4.6
2.0
 1.7
1.6
 3.1
2.1
 3.1
0.6
 3.3
2.7
8 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 4.3 3.5
 5.1
 2.5
 2.4
0.9
 4.8
0.5
 0.9
 3.3
 4.5
9 LOC4330592 protein TIC 20-v, chloroplastic 4330592 Os02g0726600 4.2 2.9
 5.5
 0.8
 3.1
1.0
 1.3
1.0
 2.0
 1.6
 1.3
10 LOC9268627 carboxymethylenebutenolidase homolog 9268627 Os05g0429500 4.2 3.0
 5.4
 3.0
 1.1
 1.3
 0.4
 3.9
 1.5
11 LOC4334795 uncharacterized LOC4334795 4334795 Os03g0850600 4.2 2.5
 5.8
 1.3
 3.5
 1.8
 1.2
 2.9
 0.4
12 LOC4345375 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 4345375 OSNPB_080360100 4.1 3.1
 5.1
 1.8
 2.4
 4.8
 2.6
 1.3
0.6
 2.6
13 LOC4331537 ankyrin repeat domain-containing protein, chloroplastic 4331537 Os03g0135600 4.1 4.0
 4.1
 3.3
 3.3
2.3
 4.4
3.5
 1.6
 1.4
0.5
 2.5
2.1
14 LOC4327790 probable 2-carboxy-D-arabinitol-1-phosphatase 4327790 Os01g0237100 4.0 3.0
 5.0
1.4
1.3
 4.4
2.8
 0.3
 0.4
 1.7
15 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 4.0 2.4
 5.6
 4.1
2.2
 6.2
3.8
 5.2
4.8
 1.8
 2.0
1.6
 2.8
0.9
16 LOC4341105 alpha-glucan water dikinase, chloroplastic 4341105 Os06g0498400 4.0 3.3
 4.7
 0.9
 3.5
2.3
 2.2
1.6
 0.8
 1.3
0.4
 3.4
17 LOC4340049 probable ribosome-binding factor A, chloroplastic 4340049 Os06g0137600 4.0 4.1
 3.8
 1.5
 5.3
 3.4
 0.9
 1.7
 2.2
18 LOC4324465 uridylate kinase 4324465 Os01g0965400 3.9 4.2
 3.7
 1.8
 3.6
2.1
 1.9
1.4
 2.2
 2.2
 3.6
19 LOC4330131 thylakoid lumenal protein TL20.3, chloroplastic 4330131 Os02g0643500 3.8 3.1
 4.5
 4.0
 1.2
 3.6
 0.3
 0.4
 -0.9
20 LOC4327038 receptor-like serine/threonine-protein kinase SD1-8 4327038 Os01g0784700 3.8 2.6
 5.0
 0.5
0.2
 -0.1
-0.5
 0.7
-1.2
 0.1
0.1
 0.7
-1.2
 0.6
-1.0
21 LOC4331681 photosynthetic NDH subunit of subcomplex B 2, chloroplastic 4331681 Os03g0158300 3.8 1.4
 6.2
 3.7
 0.1
-0.6
 1.6
1.5
 0.8
 0.7
 -0.0
22 LOC4347659 rhodanese-like domain-containing protein 14, chloroplastic 4347659 Os09g0530000 3.7 2.9
 4.6
 2.1
 2.4
1.8
 1.0
-0.5
 2.5
 2.9
1.2
23 LOC4349444 uncharacterized LOC4349444 4349444 Os10g0569000 3.7 3.2
 4.3
 0.8
 5.4
4.0
 3.8
2.9
 1.6
 1.8
 1.2
24 LOC4330883 uncharacterized LOC4330883 4330883 Os02g0773500 3.7 2.6
 4.9





25 LOC4324425 chaperone protein dnaJ C76, chloroplastic 4324425 Os01g0730500 3.7 2.0
 5.4
 1.1
 1.7
0.3
 0.9
0.6
 1.6
 2.4
 0.1
-0.2
26 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 3.7 3.1
 4.3
 1.3
 4.5
0.7
 4.2
1.3
 2.5
 1.0
0.6
 3.8
27 LOC4341569 stromal processing peptidase, chloroplastic-like 4341569 Os06g0625400 3.7 4.0
 3.3
 0.4
 4.1
3.3
 3.6
3.0
 3.1
 1.4
 2.1
28 LOC4326576 peptide deformylase 1B, chloroplastic-like 4326576 OSNPB_010637600 3.7 3.4
 3.9
 2.9
 4.3
3.1
 3.8
1.9
 0.5
 1.4
 0.8
29 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 3.6 2.9
 4.4
 1.6
 1.4
0.8
 3.2
1.7
 1.8
 1.4
 0.9
30 LOC4349782 2-carboxy-D-arabinitol-1-phosphatase 4349782 Os11g0150100 3.6 3.4
 3.8
 3.4
 1.2
0.5
 3.5
3.2
 0.9
 2.0
 1.1
31 LOC4339664 protein WHAT'S THIS FACTOR 1 homolog 4339664 Os05g0571100 3.6 2.8
 4.5
 2.2
 3.0
0.9
 0.9
0.7
 2.5
 3.0
2.0
 4.0
32 LOC4343262 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 4343262 Os07g0489800 3.6 5.0
 2.2
 3.7
 1.2
-0.0
 2.5
1.9
 1.5
 0.8
 1.4
33 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 3.6 2.7
 4.5
 1.7
 6.5
4.8
 2.3
1.6
 3.1
 1.4
1.3
 3.0
34 LOC4326994 CRS2-associated factor 2, chloroplastic 4326994 OSNPB_010323300 3.6 2.0
 5.2
 2.6
 4.4
 3.7
 2.5
 2.3
 1.8
35 LOC4330746 photosynthetic NDH subunit of lumenal location 4, chloroplastic 4330746 Os02g0751600 3.6 3.2
 3.9
 3.3
 1.4
 2.5
0.9
 0.9
36 LOC4349470 uncharacterized sugar kinase slr0537 4349470 Os10g0573000 3.5 3.4
 3.7
 2.9
 2.9
2.4
 4.9
4.7
 0.5
 2.2
 2.8
37 LOC4336989 APO protein 1, chloroplastic 4336989 Os04g0615500 3.5 3.6
 3.4
 0.6
 3.8
1.8
 3.0
1.8
 3.3
 0.4
 2.3
38 LOC4343219 thioredoxin-like protein CDSP32, chloroplastic 4343219 OSNPB_070476900 3.5 3.6
 3.4
 3.2
 1.9
 -0.1
 3.6
 3.5
 0.8
39 LOC4325517 proline-rich receptor-like protein kinase PERK8 4325517 Os01g0676200 3.5 3.3
 3.7
 1.5
 2.5
2.1
 1.4
1.0
 3.4
 2.5
 2.9
40 LOC4333878 uncharacterized LOC4333878 4333878 Os03g0710600 3.5 2.9
 4.1
 2.4
 3.7
3.5
 2.7
2.2
 0.4
 1.6
1.6
 1.5
41 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 3.5 2.9
 4.1
 2.3
 3.8
3.6
 4.1
3.5
 4.2
 2.7
2.0
 1.9
42 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 3.5 4.2
 2.7
 2.5
0.5
 5.3
4.8
 4.1
4.0
 2.6
 3.0
0.7
 1.8
-0.6
43 LOC4333802 uncharacterized LOC4333802 4333802 Os03g0695500 3.4 1.7
 5.2
 3.8
 2.5
 1.6
 0.9
 1.7
 3.1
44 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 3.4 1.4
 5.4
 3.2
 4.0
3.5
 7.4
5.1
 3.5
 1.9
1.9
 3.3
45 LOC4336948 methionine aminopeptidase 1B, chloroplastic 4336948 Os04g0610500 3.4 2.8
 4.0
 2.6
 2.6
2.2
 4.1
3.9
 1.6
 1.6
 3.6
46 LOC4333169 uncharacterized LOC4333169 4333169 Os03g0428800 3.4 2.4
 4.5
 1.7
 3.6
 0.3
 3.9
 1.5
 3.9
47 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 3.4 3.0
 3.8
 2.4
 3.3
2.6
 5.1
3.4
 1.5
 0.4
 2.2
48 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 3.4 3.0
 3.8
 4.3
 1.1
 4.5
 0.4
 2.8
 2.8
49 LOC4334845 PGR5-like protein 1A, chloroplastic 4334845 Os03g0857400 3.4 1.9
 4.9
 3.8
2.3
 1.2
0.9
 1.9
0.6
 1.8
-0.5
 2.1
0.6
 0.8
0.5
50 LOC4347421 uncharacterized LOC4347421 4347421 Os09g0485800 3.4 1.9
 4.9
1.1
 0.5

1.0
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