Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4338507   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 osa-r.5   4338507   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 ath-u.4   AT2G30100   pentatricopeptide (PPR) repeat-containing protein 
 gma-u.4   100804151   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 gma-u.4   100792633   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 sly-u.4   101264720   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 ppo-u.4   7454844   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 mtr-u.4   25490971   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 

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Top 50 coexpressed genes to 4338507 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1200   Carbon metabolism  5 257 2.68
 osa906   Carotenoid biosynthesis  3 30 4.47
 osa53   Ascorbate and aldarate metabolism  3 60 3.56
 osa710   Carbon fixation in photosynthetic organisms  4 72 3.33
 osa630   Glyoxylate and dicarboxylate metabolism  3 72 3.33

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osa:LOC4338507 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4338507
osa-r.5
for
4338507
ath-u.4
for
AT2G30100
gma-u.4
for
100804151
gma-u.4
for
100792633
sly-u.4
for
101264720
ppo-u.4
for
7454844
mtr-u.4
for
25490971
1 LOC4331854 15-cis-phytoene desaturase, chloroplastic/chromoplastic 4331854 OSNPB_030184000 3.8 5.2
 1.2
 1.0
0.0
 1.2
0.2
 0.7
 1.6
 1.8
2 LOC4334274 malate dehydrogenase, glyoxysomal-like 4334274 Os03g0773800 3.8 5.5
 0.9
0.6
 2.1
1.4
 2.2
1.2
 1.3
0.7
 0.7
0.2
 1.3
-0.2
3 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 3.8 5.5
 0.8
-0.8
 1.3
0.4
 0.5
0.4
 0.4
 0.9
0.0
 0.9
0.2
4 LOC4324587 ABC transporter D family member 2, chloroplastic 4324587 Os01g0218700 3.6 5.2
 1.1
 0.6
 0.8
 1.8
 1.5
 1.5
5 LOC4329537 neutral/alkaline invertase 3, chloroplastic-like 4329537 OSNPB_020529400 3.6 5.1
 1.3
 0.6
-0.3
 1.0
-1.1
 2.2
0.4
 2.5
2.3
 3.0
6 LOC4326617 ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial-like 4326617 OSNPB_010618800 3.6 5.1
 1.6
 0.1
0.0
 0.4
0.3
 2.1
 1.0
0.0
 1.4
7 LOC4342680 zeta-carotene desaturase, chloroplastic/chromoplastic 4342680 Os07g0204900 3.6 5.0
 2.0
 2.3
1.4
 2.2
2.0
 1.7
 1.7
1.2
 0.7
8 LOC4341796 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like 4341796 OSNPB_060669400 3.5 5.0
 0.6
-0.0
 1.9
1.4
 1.5
1.2
 2.7
1.0
 4.0
0.0
 3.0
1.9
9 LOC4336530 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like 4336530 OSNPB_040539000 3.5 4.9
 0.6
 1.3
0.8
 0.9
0.9
 0.9
 0.2
0.2
 0.8
10 LOC4332730 uncharacterized LOC4332730 4332730 Os03g0331600 3.5 5.1
 -1.6
 -0.3
-0.3
 -0.1
-0.6
 -0.8
 -0.2
 -0.1
11 LOC4328520 homeobox protein knotted-1-like 2 4328520 OSNPB_020182800 3.4 4.9
 0.9
-0.0
 1.5
1.0
 2.5
1.3
 2.3
1.8
 2.4
2.0
 1.1
0.5
12 LOC4327265 uncharacterized LOC4327265 4327265 Os01g0316900 3.4 4.9





13 LOC4332791 putative GTP diphosphokinase RSH1, chloroplastic 4332791 OSNPB_030340900 3.3 4.5
 0.6
 0.0
-1.1
 0.6
0.5
 3.3
2.9
 2.9
 0.7
14 LOC9268894 peroxisomal membrane protein PEX14 9268894 Os01g0107000 3.3 4.5
 1.8
 1.5
0.9
 2.6
2.1
 1.4
1.2
 1.1
0.6
 2.1
15 LOC4347913 probable anion transporter 4, chloroplastic 4347913 OSNPB_090570400 3.2 4.3
 0.7
0.4
 1.4
1.0
 2.5
2.4
 2.5
1.9
 2.1
0.5
 1.2
0.6
16 LOC4326593 50S ribosomal protein L31 4326593 Os01g0633000 3.2 4.7
 -0.1
 0.5
0.4
 2.0
0.3
 0.6
 0.1
 -0.5
17 LOC4329695 uncharacterized LOC4329695 4329695 Os02g0564300 3.1 4.5
 -0.1
 5.2
2.2
 5.7
3.0
 2.7
 2.0
1.9
 2.9
2.5
18 LOC4348473 protein NRT1/ PTR FAMILY 8.3 4348473 Os10g0370700 3.1 4.5





19 LOC4352042 15-cis-zeta-carotene isomerase, chloroplastic 4352042 Os12g0405200 3.1 4.3
 -0.8
 2.3
0.2
 1.8
-0.0
 0.4
 3.2
 0.1
-0.6
20 LOC4338660 UDP-sulfoquinovose synthase, chloroplastic 4338660 Os05g0387200 3.1 4.2
 0.6
 1.4
0.7
 1.1
0.2
 0.4
 0.6
 1.1
21 LOC9266469 uncharacterized LOC9266469 9266469 Os01g0272800 3.1 4.4
0.3
-0.3
 0.3
-0.5
 0.5
 2.0
0.7
 1.6
22 LOC4330797 protein CURVATURE THYLAKOID 1D, chloroplastic 4330797 Os02g0759900 3.0 4.0





23 LOC4325343 putative uncharacterized protein DDB_G0290521 4325343 3.0 4.4





24 LOC4352791 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like 4352791 OSNPB_120615400 3.0 4.1





25 LOC4342133 uncharacterized LOC4342133 4342133 Os06g0728500 3.0 3.8





26 LAS lethal albinic seedling 4329580 Os02g0538000 3.0 4.1
 0.8
 0.9
 1.4
 2.8
 1.1
 2.2
27 LOC4346247 probable L-ascorbate peroxidase 4, peroxisomal 4346247 OSNPB_080549100 3.0 4.4
 0.4
0.4
 1.2
1.1
 1.3
0.3
 1.9
-1.2
 1.8
1.4
 1.3
-0.7
28 LOC4330836 protein DCL homolog, chloroplastic 4330836 Os02g0766301 2.9 4.2
 0.5
 0.4
-0.0
 1.3
0.6
 0.0
 2.0
0.7
 1.4
29 LOC4334349 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like 4334349 Os03g0786000 2.9 4.6
 0.3
0.2
 1.3
0.7
 1.7
0.7
 2.0
-0.6
 -0.6
-1.0
 0.3
0.3
30 LOC4352773 GDP-L-galactose phosphorylase 2 4352773 Os12g0612100 2.9 3.9





31 LOC4348941 protein EXECUTER 1, chloroplastic-like 4348941 OSNPB_100485300 2.9 4.1
 0.8
 1.3
0.6
 0.9
0.6
 2.9
 1.1
 3.3
32 LOC4342210 glutamate--glyoxylate aminotransferase 2 4342210 Os07g0108300 2.9 4.3
 1.4
0.8
 1.9
1.2
 1.3
0.5
 2.5
0.9
 1.1
-1.2
 0.8
33 LOC4342113 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 4342113 OSNPB_060725900 2.9 4.0
 0.7
0.7
 2.2
2.1
 1.3
1.3
 0.9
 4.0
3.1
 3.1
34 LOC4350631 uncharacterized LOC4350631 4350631 Os11g0528500 2.9 3.9
 -0.0
 -0.4
-0.4
 0.3
-0.3
 -0.5
 1.9
 -0.2
35 LOC4337605 actin-depolymerizing factor 7-like 4337605 OSNPB_050113400 2.9 4.4
 2.9
0.8
 0.5
-0.0
 1.0
0.4
 1.7
0.1
 0.9
0.6
 1.0
-0.4
36 LOC4338667 50S ribosomal protein L1, chloroplastic 4338667 Os05g0388500 2.8 4.0
 -1.4
 1.8
1.1
 1.1
0.2
 1.9
 2.2
-0.2
 2.1
37 LOC4325531 phosphoenolpyruvate carboxylase 1 4325531 Os01g0208700 2.8 3.7
 0.9
0.8
 2.4
1.6
 3.7
2.1
 1.3
1.1
 1.1
0.5
 0.6
0.2
38 LOC4339689 translation initiation factor IF-2, chloroplastic 4339689 Os05g0575300 2.8 3.8
 1.8
 3.0
2.8
 3.3
2.8
 4.2
 4.9
1.7
 1.5
39 LOC4350458 UV-B-induced protein At3g17800, chloroplastic 4350458 Os11g0456100 2.8 4.0
 2.7
1.5
 2.8
1.9
 2.0
1.7
 1.9
 1.1
 1.7
40 LOC4330168 protein ORANGE, chloroplastic 4330168 Os02g0651300 2.8 4.6
 1.9
 1.6
1.4
 0.8
-0.0
 1.8
 0.7
 0.5
41 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 2.8 3.6
 -0.4
 -0.9
-1.1
 0.1
-0.5
 2.0
 1.3
-0.4
 1.4
42 LOC4328648 uncharacterized LOC4328648 4328648 Os02g0201000 2.8 3.9
 1.8
-0.1
 1.5
0.8
 1.2
1.2
 1.6
-0.1
 0.6
-0.4
 1.9
1.5
43 LOC4330469 monodehydroascorbate reductase 2, peroxisomal-like 4330469 OSNPB_020707100 2.8 3.9
 2.1
 2.3
2.1
 2.3
1.3
 1.7
 3.9
 1.8
44 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 2.8 3.8
 -0.5
 0.6
0.4
 2.5
0.9
 1.2
 2.0
 0.2
45 LOC4333878 uncharacterized LOC4333878 4333878 Os03g0710600 2.8 4.0
 -0.7
 1.9
1.0
 1.7
1.0
 1.9
 1.5
1.2
 1.9
46 LOC107275792 photosystem II stability/assembly factor HCF136, chloroplastic 107275792 Os06g0729650 2.8 3.9
 -0.6
 0.7
-0.7
 0.8
-0.9
 0.6
 -0.5
 0.2
47 LOC4341923 adagio-like protein 1 4341923 OSNPB_060694000 2.8 3.6
 0.2
-0.7
 3.8
3.1
 5.6
4.3
 2.5
 4.2
1.8
 3.5
48 LOC4345365 thylakoid membrane protein slr0575 4345365 Os08g0359000 2.8 3.8
 1.3
 0.8
 0.4
 1.9
 2.1
1.0
 -0.3
49 LOC4342543 probable ribose-5-phosphate isomerase 3, chloroplastic 4342543 Os07g0176900 2.7 3.8
 -0.4
 0.3
-0.2
 1.9
-0.2
 0.8
 1.4
0.5
 -0.2
50 LOC4352523 pentatricopeptide repeat-containing protein At2g31400, chloroplastic 4352523 Os12g0562300






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