Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4338555   pentatricopeptide repeat-containing protein At1g10270 
 osa-r.5   4338555   pentatricopeptide repeat-containing protein At1g10270 
 osa-m.8   4338555   pentatricopeptide repeat-containing protein At1g10270 
 ath-u.4   AT3G60960   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.4   AT5G28340   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.4   AT5G28380   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100802924   pentatricopeptide repeat-containing protein At1g10270 
 gma-u.4   100797162   pentatricopeptide repeat-containing protein At1g10270 
 sly-u.4   101259376   pentatricopeptide repeat-containing protein At1g10270 
 ppo-u.4   18111121   pentatricopeptide repeat-containing protein At1g10270 
 ppo-u.4   18098353   pentatricopeptide repeat-containing protein At1g10270 

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Top 50 coexpressed genes to 4338555 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3008   Ribosome biogenesis in eukaryotes  8 86 11.00
 osa3013   Nucleocytoplasmic transport  4 109 4.09
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa230   Purine metabolism  1 91 -
 osa3018   RNA degradation  2 112 -

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osa:LOC4338555 (pentatricopeptide repeat-containing protein At1g10270) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4338555
osa-r.5
for
4338555
osa-m.8
for
4338555
ath-u.4
for
AT3G60960
ath-u.4
for
AT5G28340
ath-u.4
for
AT5G28380
gma-u.4
for
100802924
gma-u.4
for
100797162
sly-u.4
for
101259376
ppo-u.4
for
18111121
ppo-u.4
for
18098353
1 LOC4330066 pentatricopeptide repeat-containing protein At4g36680, mitochondrial 4330066 Os02g0633200 8.6 7.8
 9.4
 2.8
2.3
 0.4
-0.4
 0.1
-0.2
 3.9
3.3
 4.1
4.0
 6.1
5.2
 5.2
3.9
 3.6
2.9
2 LOC4338508 importin subunit beta-1 4338508 Os05g0353400 7.8 6.2
 9.4
 1.5
1.5
 -0.1
-0.7
 -0.2
-0.5

3.7
 2.1
1.2
 2.5
0.8
3 LOC4336229 pentatricopeptide repeat-containing protein At1g06710, mitochondrial 4336229 Os04g0488500 7.7 6.4
 9.0
 0.6
 0.2
 0.3
 3.9
1.5
 3.7
1.0
 3.2
 3.2
 2.9
4 LOC4328227 myb-binding protein 1A-like protein 4328227 Os02g0135700 7.5 8.0
 6.9
 2.2
 -0.9
 -0.9
 5.4
3.9
 5.7
3.9
 5.7
5.7
 4.7
2.3
 4.0
3.4
5 LOC4329957 pentatricopeptide repeat-containing protein At1g79540 4329957 Os02g0611400 7.4 6.3
 8.5
 1.9
 -0.7
 -0.7
 7.2
3.4
 4.9
2.7
 3.3
 1.2
 3.2
6 LOC4339341 periodic tryptophan protein 2 4339341 Os05g0519500 7.4 9.3
 5.4
 2.2
 -0.3
 -0.4
 10.1
7.6
 9.8
9.5
 5.8
 6.1
4.3
 4.7
3.7
7 LOC4328001 U3 small nucleolar RNA-associated protein 6 homolog 4328001 Os02g0103900 7.3 5.2
 9.5
 2.8
 -1.1
 -0.9
 4.5
3.9
 4.6
4.3
 2.9
 3.4
 3.7
8 LOC4339246 H/ACA ribonucleoprotein complex non-core subunit NAF1 4339246 Os05g0502800 7.1 8.2
 6.0
 2.7
 0.9
 0.9
 6.6
6.5
 8.4
7.9
 5.8
 3.7
1.2
 3.1
1.0
9 LOC4342750 protein SLOW WALKER 1 4342750 Os07g0224900 7.1 5.7
 8.4
 3.7
 0.1
 -0.0
 6.8
6.7
 8.7
7.4
 5.6
 5.3
4.5
 3.4
3.3
10 LOC4339634 eukaryotic translation initiation factor 3 subunit D 4339634 Os05g0566500 6.8 7.0
 6.6
 3.5
3.2
 -0.9
-1.2
 -1.1
-1.1
 7.7
7.5
 7.6
6.6
 5.1
 2.0
0.9
 1.4
1.0
11 LOC4337062 uncharacterized LOC4337062 4337062 Os04g0625350 6.7 5.2
 8.3
 0.1
 -0.1
 0.0
 4.1
3.5
 3.6
2.9
 3.8
 3.9
 2.9
12 LOC4327779 exportin-2 4327779 Os01g0235400 6.7 5.0
 8.4
 1.7
 -0.9
 -1.1
 7.8
6.4
 7.5
6.6
 3.0
 2.7
1.8
 3.5
3.3
13 LOC4331168 protein KINESIN LIGHT CHAIN-RELATED 2 4331168 Os02g0820300 6.5 4.1
 8.9
 2.0
 -1.0
 -0.7
 5.2
3.3
 6.1
3.0
 3.5
 3.1
 4.0
14 LOC4344029 H/ACA ribonucleoprotein complex subunit 4 4344029 Os07g0636000 6.5 5.0
 8.0
 1.6
 -1.0
 -0.7
 7.1
6.6
 6.6
5.5
 4.0
 4.2
3.7
 2.3
2.2
15 LOC4343611 elongator complex protein 1 4343611 Os07g0563700 6.5 5.9
 7.0
 0.6
 -0.3
 -0.1
 5.1
 5.3
 6.5
 4.2
3.3
 4.1
3.1
16 LOC4343836 U3 small nucleolar RNA-associated protein 18 homolog 4343836 Os07g0603200 6.4 7.4
 5.4
 3.1
 -1.2
 -1.3
 5.5
4.7
 5.7
4.9
 3.1
 3.7
 3.0
17 LOC4344765 thyroid adenoma-associated protein homolog 4344765 Os08g0169700 6.4 6.0
 6.9
 1.8
 -1.2
 -1.0
 5.2
 4.6
 4.9
 2.5
2.3
 4.2
3.6
18 LOC4331982 uncharacterized LOC4331982 4331982 Os03g0203100 6.3 6.0
 6.6
 0.8
 -0.7
 -0.5
 5.1
4.1
 4.1
3.9
 5.9
 3.5
 6.1
19 LOC4337830 histidine--tRNA ligase, cytoplasmic-like 4337830 OSNPB_050150900 6.3 7.2
 5.4
 2.2
 -0.2
 -0.1
 5.7
4.7
 5.6
3.6
 4.1
 2.2
 2.9
20 LOC4327045 pentatricopeptide repeat-containing protein At1g55890, mitochondrial 4327045 Os01g0785700 6.2 5.9
 6.6







21 LOC4349477 60S ribosomal export protein NMD3 4349477 Os10g0573900 6.2 4.5
 7.8
 2.3
 -0.6
 -0.8
 2.9
1.6
 2.6
1.3
 3.4
 0.2
 -1.1
22 LOC4324899 probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial 4324899 Os01g0888500 6.2 6.2
 6.1
 1.0
 0.3
 0.2
 5.2
2.8
 4.9
2.9
 4.2
 3.2
2.5
 3.8
3.2
23 LOC4350404 pentatricopeptide repeat-containing protein At3g49240, mitochondrial 4350404 Os11g0433600 6.1 6.0
 6.2


5.6
4.2
 8.5
6.4
 4.7
 4.8
 4.2
24 LOC4328041 pentatricopeptide repeat-containing protein At2g37230 4328041 Os02g0110400 6.0 5.7
 6.3
 1.2
 -0.5
 -0.4
 5.0
4.6
 4.9
4.5
 4.3
 3.7
 3.1
25 LOC4342510 uncharacterized LOC4342510 4342510 Os07g0170300 6.0 6.3
 5.7
 3.2
 -0.5
 -0.7


2.1
 2.4
26 LOC4327851 putative exosome complex component rrp40 4327851 Os01g0661400 6.0 3.2
 8.8
 1.8
1.0
 -0.5
-0.6
 -0.5
-0.8
 2.7
0.5
 2.8
-0.6
 1.5
 0.2
 0.4
27 LOC4332851 nucleolar protein 56 4332851 Os03g0352300 6.0 6.2
 5.8
 2.3
1.7
 -0.0
-0.7
 0.0
-0.5
 4.3
4.0
 4.5
4.4
 3.3
 4.4
4.0
 2.9
2.6
28 LOC4327063 nuclear pore complex protein NUP35 4327063 Os01g0200500 5.9 6.1
 5.7
 1.1
 -0.3
 -0.5
 3.6
2.5
 3.3
2.1
 5.0
 1.3
 1.7
29 LOC4334820 transmembrane protein 70, mitochondrial 4334820 Os03g0853800 5.8 4.7
 6.9
 0.8
 0.3
 0.2
 4.1
 3.4
 2.5
 0.3
0.2
 0.7
0.4
30 LOC4341310 T-complex protein 1 subunit epsilon 4341310 Os06g0562600 5.8 5.9
 5.7
 0.4
 -0.7
 -0.8
 5.1
4.9
 4.2
3.5
 2.8
 2.3
2.1
 2.0
0.8
31 LOC4347576 translation initiation factor IF-2 4347576 Os09g0515500 5.8 3.7
 7.9
 2.8
 0.6
 0.5
 1.4
0.6
 1.5
1.2
 3.4
 4.1
 4.5
32 LOC9270208 protein RRP6-like 2 9270208 Os10g0437200 5.8 5.4
 6.2
 1.9
-0.1
 0.6
-0.1
 0.3
-0.2
 4.3
3.8
 3.2
3.1
 4.2
 2.9
2.6
 2.6
2.5
33 LOC4325217 uncharacterized LOC4325217 4325217 Os01g0148700 5.8 4.5
 7.0







34 LOC4329211 T-complex protein 1 subunit delta 4329211 Os02g0332200 5.8 4.7
 6.8
 2.0
 0.4
 0.2
 6.9
4.5
 5.1
3.5
 5.3
 2.0
1.8
 2.5
1.8
35 LOC4338033 probable tRNA N6-adenosine threonylcarbamoyltransferase 4338033 Os05g0194600 5.8 4.3
 7.2
 2.4
 -0.8
 -1.1
 2.4
1.0
 3.8
2.2
 3.3
 0.8
 0.9
36 LOC4331367 uncharacterized LOC4331367 4331367 Os03g0111800 5.7 4.8
 6.7
 0.9
 0.6
 0.2
 6.1
 4.7
 2.8
 3.2
 2.6
37 LOC4324613 mitochondrial acidic protein mam33 4324613 Os01g0771100 5.7 4.1
 7.3
 0.9
 -1.0
 -1.0
 3.4
2.1
 2.1
1.0
 -0.1
 1.9
 2.4
38 LOC4341492 110 kDa U5 small nuclear ribonucleoprotein component CLO 4341492 Os06g0608300 5.7 6.6
 4.7
 1.3
0.9
 -1.4
-1.8
 -1.3
-1.9
 7.8
7.8
 7.8
7.5
 6.7
 3.3
1.6
 3.5
2.3
39 LOC4342563 60S ribosomal protein L4-1 4342563 Os07g0180900 5.7 5.7
 5.7
 2.4
2.3
 0.0
-1.1
 -0.3
-1.4
 7.4
6.1
 6.2
4.7
 4.5
4.0
 3.2
3.1
 1.6
1.6
40 LOC4352748 eukaryotic translation initiation factor 2 subunit gamma 4352748 Os12g0607100 5.7 4.3
 7.0
 2.9
 -0.9
 -1.1
 2.4
2.2
 3.5
2.6
 3.9
2.9
 0.8
0.4
 -0.2
-0.3
41 LOC4325717 asparagine--tRNA ligase, cytoplasmic 3 4325717 Os01g0372700 5.7 4.6
 6.7
 3.3
2.2
 -0.9
-1.6
 -0.6
-1.5
 4.2
3.7
 2.8
2.4
 3.2
 1.4
0.4
 2.7
0.3
42 LOC4337802 T-complex protein 1 subunit zeta 1 4337802 Os05g0147400 5.6 6.1
 5.0
 1.3
0.5
 -0.9
-1.0
 -1.4
-1.4
 3.3
2.9
 2.7
2.1
 3.2
3.2
 2.1
1.5
 0.7
0.1
43 LOC4344865 nucleolin 1-like 4344865 OSNPB_080192900 5.5 6.4
 4.7
 2.5
1.8
 0.0
-0.9
 0.3
-1.1
 6.5
6.3
 7.9
7.2
 3.7
 3.0
2.0
 1.0
0.2
44 LOC4338500 ERBB-3 BINDING PROTEIN 1 4338500 Os05g0350500 5.5 6.9
 4.1
 2.0
 -1.7
 -1.6
 4.8
3.7
 3.8
3.5
 2.7
2.4
 2.0
1.1
 1.5
1.4
45 LOC4349434 nuclear intron maturase 2, mitochondrial 4349434 Os10g0567500 5.5 4.4
 6.5
 2.1
 -0.5
 -0.3
 6.9
6.6
 8.4
8.0
 3.5
 2.9
2.5
 4.5
2.9
46 LOC4343842 pentatricopeptide repeat-containing protein PNM1, mitochondrial 4343842 Os07g0603900 5.5 4.9
 6.1
 3.4
 -1.8
 -1.3
 4.5
4.2
 4.5
3.7
 2.9
 3.1
 4.5
47 LOC4352795 p21-activated protein kinase-interacting protein 1-like 4352795 Os12g0615900 5.4 5.5
 5.3
 2.8
 -0.3
 -0.3
 7.5
7.5
 9.2
8.1
 5.2
 2.7
 3.8
48 LOC4334021 WD repeat-containing protein PCN 4334021 Os03g0735100 5.4 5.7
 5.1
 2.6
2.1
 1.6
-1.0
 1.3
-1.0
 6.6
4.1
 6.6
4.2
 4.7
4.1
 3.9
1.5
 3.0
2.6
49 LOC4333478 uncharacterized LOC4333478 4333478 Os03g0622600 5.4 3.6
 7.1







50 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 5.4 5.4
 5.4
 0.9
 -1.6
 -1.7
 -0.1
-0.4
 -0.5
-1.1
 1.2
 2.8
1.4
 2.5
1.8
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