Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4338667   50S ribosomal protein L1, chloroplastic 
 osa-r.5   4338667   50S ribosomal protein L1, chloroplastic 
 osa-m.8   4338667   50S ribosomal protein L1, chloroplastic 
 ath-u.4   EMB3126   Ribosomal protein L1p/L10e family 
 gma-u.4   100808549   50S ribosomal protein L1, chloroplastic 
 gma-u.4   100819124   50S ribosomal protein L1, chloroplastic 
 sly-u.4   101256124   50S ribosomal protein L1, chloroplastic 
 ppo-u.4   7482305   50S ribosomal protein L1, chloroplastic 
 ppo-u.4   7463834   50S ribosomal protein L1, chloroplastic 
 mtr-u.4   25480072   50S ribosomal protein L1, chloroplastic 

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Top 50 coexpressed genes to 4338667 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  14 335 15.74
 osa3060   Protein export  3 49 3.82
 osa220   Arginine biosynthesis  1 36 -
 osa195   Photosynthesis  2 77 -
 osa4626   Plant-pathogen interaction  2 218 -

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osa:LOC4338667 (50S ribosomal protein L1, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4338667
osa-r.5
for
4338667
osa-m.8
for
4338667
ath-u.4
for
EMB3126
gma-u.4
for
100808549
gma-u.4
for
100819124
sly-u.4
for
101256124
ppo-u.4
for
7482305
ppo-u.4
for
7463834
mtr-u.4
for
25480072
1 LOC4331942 30S ribosomal protein S10, chloroplastic 4331942 Os03g0196800 7.0 6.9
 7.0






2 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 6.5 7.0
 6.0
 7.2
 4.5
2.3
 2.5
1.8
 6.5
 4.2
3.7
 3.7
3.4
 2.4
3 LOC4332466 50S ribosomal protein L10, chloroplastic 4332466 Os03g0284400 6.4 7.5
 5.2
 9.0
 7.2
 5.9
 4.2
 2.6
2.3
 3.4
2.3
 3.7
4 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 6.1 7.4
 4.9
 2.1
 1.6
0.9
 -0.2
-0.3
 2.7
 3.8
 1.4
 2.4
5 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 6.1 5.5
 6.7
 12.1
 8.3
 6.4
 6.2
 7.6
 6.1
 3.0
6 LAS lethal albinic seedling 4329580 Os02g0538000 6.1 7.9
 4.3
 5.7
 3.4
 2.3
 2.8
 4.5
 3.6
 2.3
7 LOC4325168 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 4325168 Os01g0271400 6.1 5.7
 6.5
 6.8
 5.3
4.4
 3.9
2.6
 5.2
 5.5
 1.9
 2.9
8 LOC4332348 50S ribosomal protein L4, chloroplastic 4332348 Os03g0265400 6.0 6.3
 5.7
 11.7
 6.5
5.3
 5.6
4.0
 5.6
 4.3
 2.5
 4.3
9 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 6.0 6.7
 5.3
 6.0
 3.5
3.3
 1.8
1.7
 3.6
 4.2
1.5
 2.8
0.6
 3.4
10 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 6.0 5.8
 6.1
 11.3
4.5
 5.9
5.6
 5.6
3.8
 7.6
 4.8
4.3
 4.0
3.4
 2.7
1.8
11 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 5.8 6.4
 5.1
 11.9
 5.2
4.4
 3.3
1.8
 6.3
 4.8
2.6
 4.2
3.0
 1.9
12 LOC4328006 putative nitric oxide synthase 4328006 OSNPB_020104700 5.6 5.0
 6.2
 3.1
 2.4
1.4
 1.2
0.4
 4.2
 3.4
 1.1
 1.9
13 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 5.5 5.3
 5.8
 6.1
 2.5
0.6
 0.8
0.8
 1.5
 3.8
 2.1
 1.0
0.5
14 LOC4337526 50S ribosomal protein L28, chloroplastic 4337526 Os05g0101400 5.5 7.5
 3.6
 8.9
 5.4
 4.4
 5.5
 4.8
 4.8
 4.1
15 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 5.4 5.4
 5.5
 5.5
 6.4
5.2
 2.9
2.7
 3.5
 3.9
3.9
 3.9
3.2
 3.6
16 LOC4332730 uncharacterized LOC4332730 4332730 Os03g0331600 5.4 5.8
 5.0
 6.3
 3.6
3.4
 3.2
1.6
 5.4
 4.3
 1.8
 4.0
17 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 5.4 6.9
 3.9
 8.7
 6.6
4.0
 3.4
2.1
 2.5
 5.4
 1.3
 2.5
18 LOC4350785 sec-independent protein translocase protein TATB, chloroplastic-like 4350785 OSNPB_110580800 5.3 6.5
 4.2
 6.0
 0.7
0.5
 -0.1
-2.0
 3.6
 2.9
1.7
 2.6
2.3
 2.6
19 LOC4339792 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic 4339792 Os05g0592100 5.3 5.5
 5.1
 5.7
 6.7
4.7
 4.2
3.3
 5.6
 4.4
 5.1
 3.9
20 LOC9270837 elongation factor Tu, chloroplastic 9270837 Os02g0595700 5.3 5.7
 4.8
7.3
7.0
 8.6
5.6
 5.8
4.9
 4.5
3.4
 4.3
3.8
 3.9
21 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 5.2 5.2
 5.2
 3.9
0.7
 7.5
 3.8
 3.4
2.6
 3.5
2.5
 2.5
0.9
 3.9
22 LOC4348745 rubisco accumulation factor 1, chloroplastic-like 4348745 OSNPB_100445600 5.1 5.3
 4.8
 3.5
2.8
 2.7
 3.2
 2.8
 4.2
 2.7
 2.8
23 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 5.1 5.3
 4.9
 4.3
 2.0
1.9
 0.4
0.2
 3.8
 4.6
 3.6
 2.4
24 LOC4332652 30S ribosomal protein S1, chloroplastic 4332652 Os03g0315800 5.0 6.9
 3.1
 9.1
 6.5
3.0
 6.2
1.9
 6.5
0.7
 6.6
5.1
 4.8
1.8
 4.4
25 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 5.0 5.2
 4.7
 2.3
 2.3
 0.7
 1.9
 5.8
 2.8
 2.2
26 LOC4334910 uncharacterized LOC4334910 4334910 Os04g0105700 5.0 5.7
 4.2
 4.5
 7.0
 7.1
 5.2
 5.7
 3.2
 1.8
27 LOC4350683 GDT1-like protein 2, chloroplastic 4350683 OSNPB_110544500 5.0 4.4
 5.5
 1.5
 2.3
 0.5
 4.9
 4.6
2.3
 2.9
1.6
 2.1
28 LOC4327627 protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic-like 4327627 OSNPB_010798500 4.9 5.3
 4.6
 1.8
 5.0
4.8
 4.8
2.6
 4.4
 4.4
 4.6
 2.9
29 LOC4333746 ferredoxin C 2, chloroplastic 4333746 Os03g0685000 4.9 3.8
 6.0
 3.6
 4.2
2.7
 3.0
1.6
 5.6
 2.4
 2.2
 2.6
30 LOC4332089 50S ribosomal protein L15, chloroplastic 4332089 Os03g0219900 4.8 6.0
 3.7
 10.5
 6.1
 4.2
 4.6
 6.5
2.5
 4.6
1.0
 4.3
31 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 4.8 4.8
 4.9
 9.9
 6.6
5.6
 3.9
3.1
5.9
 3.3
 3.2
32 LOC4333878 uncharacterized LOC4333878 4333878 Os03g0710600 4.8 5.9
 3.7
 4.2
 6.2
3.2
 6.0
4.2
 4.8
 4.7
4.5
 5.0
4.8
 3.0
33 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 4.8 5.8
 3.9
 11.3
4.5
 5.9
5.6
 5.6
3.8
 7.6
 4.8
4.3
 4.0
3.4
 2.7
1.8
34 LOC4326593 50S ribosomal protein L31 4326593 Os01g0633000 4.8 6.3
 3.2
 8.4
 3.5
3.5
 2.3
1.5
 4.5
 3.7
 4.2
 1.2
35 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 4.8 4.6
 4.9
 14.5
 6.6
3.5
 5.2
4.7
 13.8
 4.6
0.5
 2.6
-0.2
 4.0
36 LOC4334749 30S ribosomal protein S6 alpha, chloroplastic 4334749 Os03g0843400 4.8 4.5
 5.1
 11.3
 5.5
5.5
 4.6
3.9
 7.1
 6.4
 4.1
 3.9
37 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 4.7 4.9
 4.6
 7.1
5.5
 3.5
3.3
 3.2
2.4
 5.2
2.7
 7.7
3.7
 3.5
2.4
 4.1
38 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 4.7 5.7
 3.7
 12.5
 6.7
 5.5
 9.0
4.4
 5.7
4.7
 4.3
2.8
 3.1
39 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.7 3.8
 5.6
 6.0
 2.9
 1.7
 4.9
 5.2
 3.8
 2.0
40 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 4.7 6.2
 3.1
 5.1
 5.4
4.6
 3.8
3.8
 7.5
 3.5
3.1
 4.0
2.6
 3.1
41 LOC9272428 50S ribosomal protein L19-2, chloroplastic 9272428 Os02g0652600 4.7 6.3
9.5
8.9
 6.4
6.4
 4.8
4.0
 5.1
 5.0
 4.6
 3.0
42 wsl3 white stripe leaf3 4348823 Os10g0462800 4.6 4.7
 4.6
 4.9
 3.5
1.1
 2.4
0.7
 2.7
 4.0
 1.1
 3.1
43 LOC4334555 50S ribosomal protein L17, chloroplastic 4334555 Os03g0815400 4.6 4.8
 4.4
 11.0
 4.2
4.0
 2.5
1.9
 5.6
3.5
 3.9
3.9
 2.1
1.5
 3.2
44 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 4.5 5.0
 4.1
 2.3
 4.4
 2.9
 4.4
 2.3
 2.5
 0.8
45 LOC4350988 GTPase Der 4350988 Os11g0638000 4.5 4.4
 4.7
 4.8
 4.1
 2.1
 3.3
 0.6
 1.4
 1.5
46 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 4.5 5.8
 3.3
 12.1
 6.3
4.8
 4.2
3.0
 4.8
 7.0
 3.1
 4.2
47 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 4.5 4.1
 4.9
 7.2
 4.5
2.3
 2.5
1.8
 6.5
 4.2
3.7
 3.7
3.4
 2.4
48 LOC4350622 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 4350622 Os11g0526200 4.5 5.2
 3.8
 1.5
 3.6
1.6
 2.9
1.5
 4.2
 3.5
 0.5
 1.6
49 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 4.5 4.0
 5.0
 7.4
 3.4
3.2
 1.9
1.1
 6.0
 7.7
 3.6
 2.2
50 LOC4334445 probable GTP-binding protein OBGC2 4334445 OSNPB_030799700


4.4
1.9
 3.8
2.5
 2.8
 4.1
 2.9
 1.7
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