Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4339672   pentatricopeptide repeat-containing protein At5g39680 
 osa-r.5   4339672   pentatricopeptide repeat-containing protein At5g39680 
 osa-m.8   4339672   pentatricopeptide repeat-containing protein At5g39680 
 ath-u.4   EMB2744   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100783779   pentatricopeptide repeat-containing protein At5g39680 
 sly-u.4   101256942   pentatricopeptide repeat-containing protein At5g39680 
 mtr-u.4   11422995   pentatricopeptide repeat-containing protein At5g39680 

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Top 50 coexpressed genes to 4339672 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa240   Pyrimidine metabolism  2 62 2.12
 osa250   Alanine, aspartate and glutamate metabolism  1 53 -
 osa1232   Nucleotide metabolism  1 80 -
 osa230   Purine metabolism  1 91 -
 osa480   Glutathione metabolism  1 114 -

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osa:LOC4339672 (pentatricopeptide repeat-containing protein At5g39680) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4339672
osa-r.5
for
4339672
osa-m.8
for
4339672
ath-u.4
for
EMB2744
gma-u.4
for
100783779
sly-u.4
for
101256942
mtr-u.4
for
11422995
1 LOC4328019 putative pentatricopeptide repeat-containing protein At1g68930 4328019 Os02g0106300 5.8 4.3
 7.3
 5.9
 5.7
 1.7
 3.6
0.9
2 LOC4332013 putative pentatricopeptide repeat-containing protein At1g02420 4332013 Os03g0208600 5.0 4.3
 5.6
3.1
 1.0
 2.9
3 LOC4342804 pentatricopeptide repeat-containing protein At4g21065 4342804 Os07g0239600 4.6 4.0
 5.2
5.6
4.6
 2.5
4 LOC4327598 putative pentatricopeptide repeat-containing protein At5g40405 4327598 Os01g0814300 4.4 3.7
 5.1

1.6
5 LOC4344477 protein Rf1, mitochondrial 4344477 Os08g0110200 4.3 3.8
 4.9



6 LOC4348020 MEIOTIC F-BOX protein MOF-like 4348020 Os10g0126700 4.3 3.0
 5.6



7 LOC4338983 pentatricopeptide repeat-containing protein At2g27610 4338983 Os05g0455900 4.2 3.2
 5.3
 7.7
 3.8
 2.4
8 LOC4339896 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 4339896 Os06g0112000 4.2 3.7
 4.6
 5.2
 4.4
3.0
 3.7
 3.2
0.1
9 LOC4328419 pentatricopeptide repeat-containing protein At4g20770 4328419 Os02g0167200 4.1 3.0
 5.3
4.5
 1.7
 2.2
10 LOC4345655 pentatricopeptide repeat-containing protein At3g47530 4345655 Os08g0434000 4.0 3.2
 4.8
 4.7
 4.1
 3.0
 2.5
11 LOC4337840 pentatricopeptide repeat-containing protein At2g13600 4337840 Os05g0153400 3.9 3.1
 4.7



12 LOC4344262 pentatricopeptide repeat-containing protein At3g18020 4344262 Os07g0674300 3.8 2.8
 4.8
 5.5
 4.5
 2.2
 2.6
13 LOC4351284 putative pentatricopeptide repeat-containing protein At3g08820 4351284 Os12g0109300 3.8 2.9
 4.7
 6.6
 6.2
 1.6
 3.2
14 LOC4351951 oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 4351951 Os12g0270100 3.8 2.4
 5.2
 8.2
 4.8
 2.6
 2.5
15 LOC4350793 pentatricopeptide repeat-containing protein At4g14850 4350793 Os11g0583300 3.7 1.7
 5.8
 3.0
 4.3
 2.9
 2.1
1.9
16 LOC4341512 pentatricopeptide repeat-containing protein At1g03540 4341512 Os06g0611200 3.7 5.5
4.3
 5.4
 1.8
 2.5
17 LOC4344190 putative pentatricopeptide repeat-containing protein At5g40405 4344190 Os07g0662700 3.7 2.2
 5.2



18 LOC4337804 pentatricopeptide repeat-containing protein At3g05340 4337804 Os05g0147600 3.6 2.4
 4.9
 5.5
 5.8
 1.6
 0.5
19 LOC4340258 ribonucleoside-diphosphate reductase large subunit 4340258 Os06g0168600 3.6 2.6
 4.6
 1.1
 1.2
0.2
 0.4
0.2
 1.9
1.1
20 LOC107277967 putative pentatricopeptide repeat-containing protein At5g09950 107277967 Os01g0589900 3.6 5.0
7.9
 5.3
 1.3
 2.3
21 LOC4348029 uncharacterized LOC4348029 4348029 Os10g0128800 3.6 2.3
 4.8



22 LOC4328111 methyltransferase-like protein 23 4328111 Os02g0120300 3.6 3.4
 3.8
 1.1
 1.3
 0.2
 0.7
23 LOC4351907 pentatricopeptide repeat-containing protein At5g27110 4351907 Os12g0256900 3.5 3.1
 3.9
4.8
 2.9
24 LOC4346646 uncharacterized LOC4346646 4346646 Os09g0296400 3.5 4.7
 2.3
 3.1
 3.3
 0.8
 2.2
25 LOC107280234 pentatricopeptide repeat-containing protein At3g13880-like 107280234 3.5 4.9




26 LOC4351677 pentatricopeptide repeat-containing protein At2g33760 4351677 Os12g0181900 3.5 3.2
 3.7
1.9

27 LOC4346006 putative pentatricopeptide repeat-containing protein At3g05240 4346006 Os08g0511000 3.4 1.9
 5.0


3.8
28 LOC4343927 homeobox-DDT domain protein RLT3 4343927 Os07g0619600 3.4 4.0
 2.9
 2.5
 4.6
4.2
 2.1
 2.7
29 LOC4342999 transcription termination factor MTEF18, mitochondrial 4342999 Os07g0409400 3.4 2.9
 3.9
 2.2
 2.7
1.7
 0.5
 2.6
1.6
30 LOC4331982 uncharacterized LOC4331982 4331982 Os03g0203100 3.4 3.6
 3.2
 3.5
 3.2
3.0
 1.8
 2.4
31 LOC4349672 non-structural maintenance of chromosomes element 1 homolog 4349672 Os11g0130300 3.4 1.7
 5.0
 1.9
 0.5
 -0.8
 0.2
32 LOC4333869 zinc finger protein VAR3, chloroplastic 4333869 Os03g0708900 3.4 3.4
 3.4
 2.1
 4.3
2.9
 1.8
 2.3
33 LOC107278384 pentatricopeptide repeat-containing protein At4g02750 107278384 Os04g0432800 3.3 4.5




34 LOC4327956 pentatricopeptide repeat-containing protein At1g33350 4327956 Os01g0800400 3.3 1.8
 4.8


1.4
35 LOC9270399 DNA-directed RNA polymerase I subunit 1 9270399 Os06g0612200 3.3 4.5
1.2
 3.3
 1.7
 3.2
36 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 3.3 3.3
 3.2
 0.9
 0.6
0.5
 0.7
 1.8
-0.7
37 LOC4341594 nuclear intron maturase 4, mitochondrial 4341594 Os06g0634100 3.3 2.6
 3.9
1.9
 1.1
 1.1
38 LOC4343346 ribosomal RNA small subunit methyltransferase, mitochondrial 4343346 Os07g0509600 3.2 2.9
 3.5
 1.6
 3.1
2.4
 1.7
 1.9
39 LOC4334929 pentatricopeptide repeat-containing protein At3g29230 4334929 Os04g0110500 3.2 2.3
 4.1



40 LOC107277503 pentatricopeptide repeat-containing protein At5g46100 107277503 Os01g0672166 3.2 4.1
6.0
 3.1
 2.1
 1.4
41 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 3.2 3.0
 3.4



42 LOC4327605 putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial 4327605 Os01g0819800 3.2 3.1
 3.3
 8.5
 4.5
 2.0
 2.4
43 LOC4342414 non-structural maintenance of chromosomes element 3 homolog 4342414 Os07g0151300 3.2 2.5
 3.9
 0.5
 -0.2
-0.5
 0.6
 0.5
44 LOC4351313 pentatricopeptide repeat-containing protein At4g18840 4351313 Os12g0114400 3.2 3.5
 2.9
4.8

45 LOC4334566 pentatricopeptide repeat-containing protein At2g41080 4334566 Os03g0816600 3.1 3.1
 3.1
 3.4
 4.4
 2.2
 2.8
46 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 3.1 3.1
 3.0
 1.5
 2.9
 1.4
 2.7
47 LOC4348962 putative pentatricopeptide repeat-containing protein At5g52630 4348962 Os10g0488900 3.1 1.6
 4.6



48 LOC4327795 F-box only protein 7 4327795 Os01g0530500 3.1 2.6
 3.6



49 LOC4345420 putative pentatricopeptide repeat-containing protein At3g25970 4345420 Os08g0375800 3.1 2.6
 3.5
 6.4
 7.7
 2.3
50 LOC9270492 pentatricopeptide repeat-containing protein At5g56310 9270492 Os03g0169300 3.1 3.8

4.5
2.6
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