Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4339686   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 osa-r.5   4339686   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ath-u.4   ECB2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100794338   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 sly-u.4   101255183   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ppo-u.4   7478377   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 mtr-u.4   25491357   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 

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Top 50 coexpressed genes to 4339686 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3018   RNA degradation  1 112 -
 osa970   Aminoacyl-tRNA biosynthesis  1 117 -
 osa270   Cysteine and methionine metabolism  1 122 -
 osa1230   Biosynthesis of amino acids  1 234 -

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osa:LOC4339686 (pentatricopeptide repeat-containing protein At1g15510, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4339686
osa-r.5
for
4339686
ath-u.4
for
ECB2
gma-u.4
for
100794338
sly-u.4
for
101255183
ppo-u.4
for
7478377
mtr-u.4
for
25491357
1 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 6.0 8.4
 7.8
5.9
 4.1
2.8
 3.8
 4.2
2.2
 3.0
1.5
2 LOC4341808 twinkle homolog protein, chloroplastic/mitochondrial 4341808 Os06g0671700 5.3 7.6
 6.2
 2.4
1.8
 4.7
 4.0
 1.8
3 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 5.3 7.3
 3.2
 4.0
2.6
 2.5
 1.7
 3.2
4 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 5.1 6.7
 5.0
 2.3
1.8
 5.8
 1.9
 2.3
5 LOC4341695 DNA-directed RNA polymerase 3B, chloroplastic 4341695 Os06g0652000 5.0 6.7
 11.4
5.5
 4.0
3.8
 5.4
3.5
 3.8
3.4
 4.2
2.5
6 LOC4338780 uncharacterized protein Cbei_0202 4338780 Os05g0411200 4.9 6.5
 4.9
 2.3
0.2
 4.2
 0.9
 0.6
7 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 4.8 6.8
 7.9
 1.8
 1.8
 1.8
 3.0
8 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 4.7 6.2
 2.4
 3.1
2.0
 2.6
 0.9
 2.6
9 LOC4327755 uncharacterized protein At4g37920 4327755 Os01g0306800 4.6 6.6
 4.8
 3.3
1.7
 5.8
 0.5
 1.5
10 LOC4348255 uncharacterized LOC4348255 4348255 Os10g0198600 4.6 6.2
 4.5
 1.1
0.3
 3.0
 0.5
-0.2
 3.3
11 wsl3 white stripe leaf3 4348823 Os10g0462800 4.6 6.1
 4.2
 2.6
1.8
 3.7
 3.0
 2.3
12 LOC4328994 proteinaceous RNase P 1, chloroplastic/mitochondrial 4328994 Os02g0273800 4.6 6.2
1.9
 0.7
 -0.1
 1.2
13 LOC4346032 transcription termination factor MTERF6, chloroplastic/mitochondrial 4346032 Os08g0515800 4.5 6.3
 4.3
 2.1
1.2
 2.2
 0.3
 1.5
14 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.5 5.9
 5.6
 3.1
2.6
 3.6
 2.3
2.2
 3.9
15 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 4.5 6.0
 2.5
 3.7
3.6
 2.2
 1.0
 1.3
16 LOC107277281 pentatricopeptide repeat-containing protein At4g01030, mitochondrial 107277281 Os05g0586900 4.4 6.2
 4.6
 4.8
3.2
 1.0
 1.5
 3.1
17 LOC4334623 pentatricopeptide repeat-containing protein At1g74850, chloroplastic 4334623 Os03g0824100 4.4 6.1
 5.8
 3.6
3.0
 6.4
 2.1
 3.7
18 LOC4339536 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4339536 Os05g0551900 4.4 6.2
 3.1
 3.3
2.3
 3.2
 2.9
 3.1
1.2
19 LOC4344860 pentatricopeptide repeat-containing protein At3g59040 4344860 Os08g0191900 4.3 5.8
 6.0
 3.4
2.7
 3.3
 1.6
 1.3
20 LOC4338694 protein PALE CRESS, chloroplastic 4338694 Os05g0393400 4.3 6.0
 2.2
 3.2
 4.9
 0.8
 0.5
21 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 4.3 5.6
 4.0
 2.9
1.8
 3.9
 1.5
 2.6
22 LOC4333402 fructokinase-like 2, chloroplastic 4333402 Os03g0602600 4.3 5.9
 11.6
 4.3
3.9
 3.9
 5.3
 3.5
23 LOC4327479 cysteine synthase-like 4327479 Os01g0814800 4.3 5.7
 5.9

3.3
 2.6
24 LOC4344001 29 kDa ribonucleoprotein A, chloroplastic 4344001 Os07g0631900 4.3 5.8
 2.0
0.6
 4.1
3.8
 4.1
2.9
 2.5
1.8
 4.3
25 LOC9269607 uncharacterized LOC9269607 9269607 Os02g0266500 4.3 5.7
 3.0
 2.5
 1.1
 2.9
 0.9
26 LOC4336085 CRM-domain containing factor CFM2, chloroplastic 4336085 Os04g0464800 4.2 5.9
 2.5
 3.3
1.3
 4.9
 1.7
 1.3
27 LOC4351665 dynamin-like protein ARC5 4351665 4.2 5.9
 -0.6
 -0.4
 0.5
 0.4
 1.1
28 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 4.2 5.0
2.3
 1.1
 0.9
29 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 4.2 5.3




30 LOC4332899 uncharacterized LOC4332899 4332899 Os03g0363400 4.1 5.4
 3.7
 1.8
 0.6
 2.2
 0.2
0.2
31 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 4.1 4.9
 7.6
 2.6
 4.8
 3.3
 2.6
32 LOC4346938 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic 4346938 OSNPB_090382400 4.0 5.1
 6.1
 1.4
 2.5
 2.8
 1.0
33 LOC4334778 arginine decarboxylase 4334778 Os03g0848100 4.0 5.2
1.8
 1.4
1.0
 1.3
 2.1
1.0
34 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 3.9 5.1
 5.9
 2.3
 2.3
 0.6
 1.1
35 LOC4343774 pentatricopeptide repeat-containing protein At5g02860 4343774 Os07g0590600 3.9 5.5
 3.8
 4.1
3.7
 4.0
 3.4
3.0
 3.0
36 LOC4349098 uncharacterized LOC4349098 4349098 Os10g0512500 3.9 5.1
 1.5
 3.2
 2.7
 2.0
 1.5
37 LOC4328108 pentatricopeptide repeat-containing protein At2g17033 4328108 Os02g0120000 3.9 5.1
 2.0
 1.3
 1.9
 1.4
 1.8
38 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 3.9 4.9
 5.0
 1.8
 3.4
 1.7
0.7
 1.8
39 LOC4325801 chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic-like 4325801 OSNPB_010132800 3.8 5.6
 3.4
2.5
 1.7
 2.8
 1.5
 0.4
0.3
40 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 3.8 4.8
 2.3
 2.0
 2.3
 0.7
 0.4
41 LOC9269203 tRNase Z TRZ2, chloroplastic 9269203 Os09g0482680 3.8 4.7
 5.8
0.7
 2.8
2.4
 2.6
1.5
 3.5
1.2
 3.4
0.0
42 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 3.8 4.9
 9.1
 3.5
2.2
 4.1
 3.7
 2.8
43 LOC4345875 uncharacterized LOC4345875 4345875 Os08g0484800 3.7 5.2
 -0.1
 0.7
0.1
 0.7
 1.0
-0.6
 0.4
44 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 3.7 4.9
 2.0
0.6
 4.1
3.8
 4.1
2.9
 2.5
1.8
 4.3
45 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 3.7 5.1
 0.5
 1.2
 3.6
 2.3
 0.7
46 LOC4327567 Ribonuclease III domain-containing protein RNC1, chloroplastic 4327567 OSNPB_010810100 3.7 5.0
 3.1
 3.8
2.1
 4.7
 4.2
 2.1
47 LOC9271035 DNA topoisomerase 1 9271035 Os06g0281400 3.7 4.8
 8.7
 3.1
1.5
 4.6
 4.1
 2.9
48 wsl6 white stripe leaf6 9271571 OSNPB_050567300 3.6 4.6
 4.0
 1.0
1.0
 3.1
 1.6
 2.2
49 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 3.6 4.6
 1.3
0.2
 2.8
2.3
 2.3
 2.7
2.6
 2.6
1.5
50 LOC4324772 5'-3' exonuclease 4324772 Os01g0874800 3.6 4.8
 2.1
 3.7
 2.9
 0.5
 2.1
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