Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4339725   putative pentatricopeptide repeat-containing protein At3g47840 
 osa-r.5   4339725   putative pentatricopeptide repeat-containing protein At3g47840 
 gma-u.4   100817501   putative pentatricopeptide repeat-containing protein At3g47840 
 sly-u.4   101247291   putative pentatricopeptide repeat-containing protein At3g47840 
 mtr-u.4   11414517   putative pentatricopeptide repeat-containing protein At3g47840 

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Top 50 coexpressed genes to 4339725 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3410   Base excision repair  1 40 -
 osa3030   DNA replication  1 41 -
 osa3420   Nucleotide excision repair  1 53 -
 osa53   Ascorbate and aldarate metabolism  1 64 -
 osa480   Glutathione metabolism  1 114 -

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osa:LOC4339725 (putative pentatricopeptide repeat-containing protein At3g47840) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4339725
osa-r.5
for
4339725
gma-u.4
for
100817501
sly-u.4
for
101247291
mtr-u.4
for
11414517
1 LOC4334286 pentatricopeptide repeat-containing protein At2g22070 4334286 Os03g0775400 3.5 4.6
 3.3
 4.0
2 LOC4333040 pentatricopeptide repeat-containing protein At4g33990 4333040 Os03g0396200 3.2 4.1
 2.1
 1.5
 2.6
3 LOC4342804 pentatricopeptide repeat-containing protein At4g21065 4342804 Os07g0239600 3.2 4.2
 3.6
3.0
 4.1
4 LOC4350065 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 4350065 Os11g0213500 3.1 4.6
 1.8
5.3
5 LOC4343937 pentatricopeptide repeat-containing protein At4g28010 4343937 Os07g0621100 3.0 4.2


6 LOC4351284 putative pentatricopeptide repeat-containing protein At3g08820 4351284 Os12g0109300 2.9 3.7
 1.3
 2.7
 4.2
7 LOC4328419 pentatricopeptide repeat-containing protein At4g20770 4328419 Os02g0167200 2.9 4.0
 1.7
 5.3
 4.8
8 LOC107278384 pentatricopeptide repeat-containing protein At4g02750 107278384 Os04g0432800 2.8 3.9


9 LOC4345516 pentatricopeptide repeat-containing protein At5g12100, mitochondrial 4345516 Os08g0402600 2.8 3.8


10 LOC112936099 pentatricopeptide repeat-containing protein At1g20230-like 112936099 2.8 3.8
3.8
 2.0
11 LOC4324152 GTP-binding protein At2g22870 4324152 Os01g0732200 2.7 4.0
 1.7
1.0
 0.4
 1.2
12 LOC4324450 pentatricopeptide repeat-containing protein At4g02750 4324450 Os01g0589400 2.6 3.8


13 LOC4325056 uncharacterized LOC4325056 4325056 Os01g0858700 2.6 3.6
 3.0
1.8
 0.1
 2.0
14 LOC4344477 protein Rf1, mitochondrial 4344477 Os08g0110200 2.6 3.1


15 LOC4327956 pentatricopeptide repeat-containing protein At1g33350 4327956 Os01g0800400 2.5 3.3

2.7
16 LOC4325366 putative pentatricopeptide repeat-containing protein At5g52630 4325366 Os01g0651100 2.5 3.9
 1.1
 4.6
 3.0
17 LOC4348962 putative pentatricopeptide repeat-containing protein At5g52630 4348962 Os10g0488900 2.5 3.0


18 LOC107277503 pentatricopeptide repeat-containing protein At5g46100 107277503 Os01g0672166 2.5 3.6
 1.3
 3.2
 2.2
19 LOC107277707 putative pentatricopeptide repeat-containing protein At3g08820 107277707 Os11g0109600 2.5 3.4
 1.3
 2.7
 4.2
20 LOC4327080 protein IWS1 homolog A 4327080 Os01g0204000 2.4 3.4
 -0.2
-0.8
 0.6
 1.8
21 LOC4327814 pentatricopeptide repeat-containing protein At3g16610 4327814 Os01g0977400 2.4 3.0
 1.7
3.7
22 LOC9266052 vacuolar protein sorting-associated protein 60.1 9266052 Os01g0103000 2.4 3.4
 -0.9
 1.1
-1.1
 -0.6
23 LOC4338983 pentatricopeptide repeat-containing protein At2g27610 4338983 Os05g0455900 2.4 3.4
 2.8
 3.2
24 LOC4342977 pentatricopeptide repeat-containing protein At3g26782, mitochondrial 4342977 Os07g0299800 2.4 3.4
 1.6
 2.7
 2.9
25 LOC9267207 pentatricopeptide repeat-containing protein At5g15010, mitochondrial 9267207 Os01g0816000 2.4 3.2
 1.9
 0.6
 2.1
26 LOC4324584 inactive TPR repeat-containing thioredoxin TTL3 4324584 Os01g0218200 2.3 3.4
 1.7
1.6
 -0.6
 -0.5
27 LOC4324816 pentatricopeptide repeat-containing protein At3g09060 4324816 Os01g0852900 2.3 3.2
 2.4
 3.9
 4.1
28 LOC4334907 uncharacterized protein C594.04c 4334907 Os04g0105300 2.3 2.8
 1.0
0.9
 1.6
 -0.0
29 LOC4328117 bifunctional protein FolD 4, chloroplastic 4328117 Os02g0120900 2.3 3.3
 2.2
0.8
 3.7
 1.5
30 LOC4344224 uncharacterized LOC4344224 4344224 Os07g0668200 2.3 3.1
 1.8
1.2
 1.6
 2.1
31 LOC4330315 pentatricopeptide repeat-containing protein At1g74900, mitochondrial 4330315 Os02g0679200 2.3 2.7
 0.5
0.4
 0.1
 1.2
32 LOC4339672 pentatricopeptide repeat-containing protein At5g39680 4339672 Os05g0572900 2.3 2.5
 2.4
 2.0
 4.1
33 LOC4342414 non-structural maintenance of chromosomes element 3 homolog 4342414 Os07g0151300 2.3 2.7
 -0.2
-1.0
 -0.9
 1.2
34 LOC4349362 pentatricopeptide repeat-containing protein At3g02330, mitochondrial-like 4349362 2.3 3.2
4.4
35 LOC4344262 pentatricopeptide repeat-containing protein At3g18020 4344262 Os07g0674300 2.3 2.7
 1.2
 2.4
 4.4
36 LOC4339275 single-stranded DNA-binding protein, mitochondrial 4339275 Os05g0509700 2.3 2.9
 2.4
0.5
 3.1
 3.1
37 LOC4325580 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 4325580 Os01g0715900 2.3 2.8


38 LOC4350437 short integuments 2, mitochondrial 4350437 Os11g0447300 2.3 2.7
 1.0
0.8
 2.7
-0.2
 1.6
39 LOC4347017 pentatricopeptide repeat-containing protein At4g02750 4347017 Os09g0407800 2.3 3.2
 2.8
 2.6
 2.7
40 LOC4332493 uncharacterized LOC4332493 4332493 Os03g0288800 2.3 2.9
 0.9
 0.7
 3.2
41 LOC4345759 uncharacterized LOC4345759 4345759 Os08g0459100 2.2 3.0
 0.7
-0.7
 0.7
 2.4
0.1
42 LOC9272531 pentatricopeptide repeat-containing protein At2g35030, mitochondrial 9272531 Os11g0433101 2.2 3.0
 2.4
 3.5
 3.6
2.3
43 LOC4340581 probable glutathione S-transferase DHAR2, chloroplastic 4340581 Os06g0232600 2.2 3.2
 0.8
0.7
 0.3
 -0.2
44 LOC4339437 glucan endo-1,3-beta-glucosidase 8 4339437 Os05g0535100 2.2 3.0
 1.0
0.3
 1.4
0.3
 0.2
-0.2
45 LOC4347727 WD-40 repeat-containing protein MSI3 4347727 Os09g0540600 2.2 2.5
 1.3
0.5
 1.6
0.6
 2.6
2.1
46 LOC107280628 pentatricopeptide repeat-containing protein At2g13600-like 107280628 2.2 3.1
 1.5
 4.1
 3.8
47 LOC4346517 pentatricopeptide repeat-containing protein At4g14850 4346517 Os09g0251500 2.2 2.8
 3.0
 2.6
 2.9
48 LOC4325920 pentatricopeptide repeat-containing protein At3g22690 4325920 Os01g0646000 2.2 3.1
 1.9
0.7
 3.4
 0.9
49 LOC4344147 probable glycosyltransferase STELLO1 4344147 Os07g0656400 2.2 2.8


50 LOC4331630 nephrocystin-3 4331630 Os03g0149400



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