Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4339890   pentatricopeptide repeat-containing protein At5g27270 
 osa-r.5   4339890   pentatricopeptide repeat-containing protein At5g27270 
 osa-m.8   4339890   pentatricopeptide repeat-containing protein At5g27270 
 ath-u.4   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100818679   pentatricopeptide repeat-containing protein At5g27270 
 sly-u.4   101248463   pentatricopeptide repeat-containing protein At5g27270 
 ppo-u.4   7469842   pentatricopeptide repeat-containing protein At5g27270 
 ppo-u.4   18110105   pentatricopeptide repeat-containing protein At5g27270 
 mtr-u.4   25501775   pentatricopeptide repeat-containing protein At5g27270 

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Top 50 coexpressed genes to 4339890 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  3 70 3.36
 osa3060   Protein export  2 49 2.32
 osa220   Arginine biosynthesis  1 36 -
 osa330   Arginine and proline metabolism  1 58 -
 osa564   Glycerophospholipid metabolism  1 120 -

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osa:LOC4339890 (pentatricopeptide repeat-containing protein At5g27270) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4339890
osa-r.5
for
4339890
osa-m.8
for
4339890
ath-u.4
for
EMB976
gma-u.4
for
100818679
sly-u.4
for
101248463
ppo-u.4
for
7469842
ppo-u.4
for
18110105
mtr-u.4
for
25501775
1 LOC4336148 uncharacterized LOC4336148 4336148 Os04g0475300 6.3 6.6
 6.0
 -0.7
 2.8
 -0.2
 0.2
 0.1
2 LOC4347821 cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 4347821 Os09g0556500 5.4 6.7
 4.2
 1.3
 3.3
2.7
 1.5
 1.3
 1.1
 2.6
3 LOC4328994 proteinaceous RNase P 1, chloroplastic/mitochondrial 4328994 Os02g0273800 5.4 6.2
 4.6
1.4
 2.0
 1.4
 1.4
 2.7
4 LOC4339851 uncharacterized LOC4339851 4339851 Os06g0104000 5.4 5.2
 5.5
 1.4
 4.0
1.7
1.2
 1.5
 2.3
5 LOC4342717 pentatricopeptide repeat-containing protein At2g41720 4342717 Os07g0213300 5.1 5.3
 4.9
 2.9
 4.2
 2.9
 2.6
 2.4
 3.8
6 LOC4325987 uncharacterized lipoprotein syc1174_c 4325987 Os01g0127400 5.1 3.7
 6.4
2.1
 2.0
 0.4
 1.3
 2.1
7 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 5.0 4.6
 5.4
 1.3
 3.0
 2.0
 1.7
 2.5
 2.7
8 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 5.0 4.3
 5.7
 3.6
 3.8
2.3
 1.4
 0.4
-0.2
 1.6
1.2
 4.2
9 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 4.9 5.8
 4.0
 3.6
 3.8
2.3
 1.4
 0.4
-0.2
 1.6
1.2
 4.2
10 LOC4339922 superoxide dismutase [Fe] 1, chloroplastic-like 4339922 OSNPB_060115400 4.8 3.3
 6.2
 1.9
0.3
 2.9
1.0
 -0.2
-0.4
 2.1
-0.3
 3.0
0.2
 0.8
11 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 4.8 5.0
 4.5
 3.2
 2.1
 0.6
 1.0
 0.7
 3.2
12 LOC4334509 calreticulin-2 4334509 4.7 4.0
 5.4





13 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 4.7 4.2
 5.2
 2.3
 3.5
2.0
 2.2
 0.6
0.4
 1.2
-0.1
 3.5
14 wsl6 white stripe leaf6 9271571 OSNPB_050567300 4.7 4.0
 5.4
 2.2
 4.2
-0.8
 3.8
 -0.3
 0.7
 2.1
15 LOC4339689 translation initiation factor IF-2, chloroplastic 4339689 Os05g0575300 4.7 5.6
 3.8
 2.5
 3.7
2.1
 3.8
 1.9
1.9
 1.9
1.7
 3.5
16 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.7 4.3
 5.0
 2.6
 4.7
 3.0
 3.4
 3.2
 3.3
17 LOC4342770 glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic-like 4342770 OSNPB_070229800 4.6 3.1
 6.1
 2.5
 2.6
 0.9
 2.4
 1.7
 1.1
18 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 4.6 3.1
 6.1
 2.5
 3.0
 -0.0
 1.1
 -0.0
 0.7
19 wsl5 white stripe leaf5 4337454 Os04g0684500 4.6 3.5
 5.6
 4.6
 7.1
6.0
 3.7
2.1
 2.7
1.0
 2.8
1.6
 3.8
20 LOC4350988 GTPase Der 4350988 Os11g0638000 4.6 4.3
 4.8
 4.0
 3.2
 3.1
 -0.2
 0.4
 2.6
21 LOC4334251 cytochrome c biogenesis protein CCS1, chloroplastic-like 4334251 OSNPB_030769600 4.5 5.1
 4.0
 0.9
 2.5
 3.3
 -0.1
 1.3
 1.7
22 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 4.5 5.3
 3.8
 3.1
 5.3
 3.2
 2.2
1.9
 2.6
1.8
 1.0
23 LOC4325242 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 4325242 Os01g0960300 4.5 4.1
 4.9
 5.3
 4.8
2.8
 3.3
 2.9
 1.5
 2.4
24 RA1 rice albino1 4339847 Os06g0103600 4.5 4.4
 4.6
 4.1
 3.2
 2.4
 2.9
2.4
 2.9
2.2
 2.0
25 LOC4338877 DAR GTPase 3, chloroplastic 4338877 Os05g0430400 4.4 3.6
 5.3
 1.9
 2.4
1.4
 2.9
 0.9
 1.2
 2.4
26 LOC4337429 endonuclease MutS2 4337429 Os04g0680700 4.4 4.4
 4.5
 4.5
 4.3
 0.7
 2.5
 1.5
 3.1
27 LOC4324446 30S ribosomal protein S1 homolog A 4324446 Os01g0589000 4.4 4.3
 4.6
 2.1
 4.7
3.4
 2.4
 1.8
1.6
 2.7
1.8
 2.6
28 LOC4325508 pentatricopeptide repeat-containing protein At1g30610, chloroplastic 4325508 Os01g0674700 4.4 6.2
6.2
 3.9
 1.7
 1.1
 2.4
 3.1
29 LOC4350828 GTPase HflX 4350828 Os11g0592700 4.4 4.5
 4.3
 2.4
 3.8
 3.0
 1.5
 1.5
 2.0
30 LOC4336824 31 kDa ribonucleoprotein, chloroplastic 4336824 Os04g0591000 4.4 4.7
 4.0
 1.3
 1.4
0.3
 0.5
 0.3
 0.2
 1.1
31 LOC4324676 uncharacterized LOC4324676 4324676 Os01g0558800 4.4 4.0
 4.7
 2.5
 3.4
2.3
 2.6
 -0.4
 -0.2
 0.4
32 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 4.3 3.6
 5.0
 2.9
 3.0
1.8
 2.6
 0.8
 1.4
 1.6
33 LOC4328006 putative nitric oxide synthase 4328006 OSNPB_020104700 4.3 4.2
 4.5
 3.3
 3.8
3.0
 1.8
 0.3
 0.4
 2.6
34 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 4.3 4.0
 4.6





35 LOC4338694 protein PALE CRESS, chloroplastic 4338694 Os05g0393400 4.3 4.3
 4.4
 3.4
 2.5
 2.0
 0.2
 -0.1
 1.8
36 LAS lethal albinic seedling 4329580 Os02g0538000 4.3 5.0
 3.6
 2.6
 3.6
 1.9
 0.8
 1.5
 3.2
37 LOC4339320 acetyltransferase NSI 4339320 Os05g0516300 4.3 4.2
 4.3
 0.4
 1.8
 2.2
 0.4
 1.2
 2.1
38 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 4.3 3.2
 5.3
 3.0
2.5
 5.1
3.1
 3.4
0.1
 0.6
0.4
 1.3
-0.0
 4.4
3.2
39 LOC9268343 uncharacterized protein At3g52155, chloroplastic 9268343 Os09g0287300 4.2 3.9
 4.6
 2.1
 2.8
1.9
 1.5
 0.4
0.3
 1.3
1.0
 1.5
40 LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like 4334537 OSNPB_030811100 4.2 3.7
 4.8
 2.3
 5.4
2.1
 1.2
 1.2
 2.7
 2.9
41 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 4.2 3.2
 5.3
 3.4
 3.0
 4.7
 1.8
1.4
 2.9
1.8
 2.1
42 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 4.2 3.0
 5.4
 2.0
 3.8
3.0
 4.6
 0.7
 1.1
 2.3
43 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 4.2 4.1
 4.3
 4.2
1.7
 2.4
1.5
 1.4
 0.5
0.2
 -0.3
-1.0
 1.2
1.2
44 wsl white stripe leaf 4324682 Os01g0559500 4.2 4.3
 4.1
 6.5
 3.3
 3.8
 1.4
0.1
 1.8
1.0
 2.8
45 LOC4348255 uncharacterized LOC4348255 4348255 Os10g0198600 4.2 4.4
 3.9
 1.8
 3.9
2.8
 1.1
 2.3
1.1
 2.9
0.9
 3.7
46 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 4.1 4.7
 3.6
 0.9
0.1
 1.6
0.1
 -0.3
 -1.4
 -1.3
 0.4
-0.2
47 LOC4344752 protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 4344752 Os08g0167500 4.1 3.8
 4.4
 1.1
 0.3
0.1
 0.0
 0.3
 0.4
 0.7
48 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 4.1 3.2
 5.0
 2.0
 1.8
1.0
 3.3
 -1.2
 -0.5
 1.7
49 LOC4337577 uncharacterized LOC4337577 4337577 Os05g0108000 4.1 3.7
 4.5
 4.1
 1.5
 2.8
 1.9
 1.3
 1.2
50 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 4.1 4.5
 3.7
 -0.3
 3.9
1.8
 2.3
 0.7
 1.5
 3.1
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