Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-r.5   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-m.8   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 ath-u.4   CRR22   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100802087   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 gma-u.4   100801345   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 sly-u.4   101265612   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 ppo-u.4   7460274   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 mtr-u.4   25488566   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 mtr-u.4   25488565   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 

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Top 50 coexpressed genes to 4339896 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa240   Pyrimidine metabolism  2 62 2.12
 osa250   Alanine, aspartate and glutamate metabolism  1 53 -
 osa1232   Nucleotide metabolism  1 80 -
 osa230   Purine metabolism  1 91 -
 osa480   Glutathione metabolism  1 114 -

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osa:LOC4339896 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4339896
osa-r.5
for
4339896
osa-m.8
for
4339896
ath-u.4
for
CRR22
gma-u.4
for
100802087
gma-u.4
for
100801345
sly-u.4
for
101265612
ppo-u.4
for
7460274
mtr-u.4
for
25488566
mtr-u.4
for
25488565
1 LOC4348962 putative pentatricopeptide repeat-containing protein At5g52630 4348962 Os10g0488900 6.3 3.3
 9.3






2 LOC4344477 protein Rf1, mitochondrial 4344477 Os08g0110200 5.7 2.7
 8.6






3 LOC4333330 pentatricopeptide repeat-containing protein At3g24000, mitochondrial 4333330 Os03g0582100 5.3 3.6
 7.0






4 LOC4351951 oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 4351951 Os12g0270100 4.9 3.8
 6.1
 5.2
 7.4
 4.0
 3.4
 4.7
 4.1
 -0.3
5 LOC4344262 pentatricopeptide repeat-containing protein At3g18020 4344262 Os07g0674300 4.9 2.9
 6.9
 4.4
 4.8
 2.9
 2.8
 2.2
 4.3
 0.3
6 LOC4342804 pentatricopeptide repeat-containing protein At4g21065 4342804 Os07g0239600 4.9 2.9
 6.8
5.5
5.1
 4.3
1.8
 3.0


7 LOC4333040 pentatricopeptide repeat-containing protein At4g33990 4333040 Os03g0396200 4.7 3.1
 6.3
 5.4
 3.6
 0.5
 1.7
 2.6
 3.6
 0.5
8 LOC4334236 pentatricopeptide repeat-containing protein At5g46460, mitochondrial 4334236 Os03g0767700 4.7 2.8
 6.6
 2.2





9 LOC4351284 putative pentatricopeptide repeat-containing protein At3g08820 4351284 Os12g0109300 4.6 2.5
 6.7
 4.2
 5.2
 1.9
 3.8
 5.7
0.3
 4.9
 0.2
10 LOC4345420 putative pentatricopeptide repeat-containing protein At3g25970 4345420 Os08g0375800 4.6 2.9
 6.3
 3.9
 3.9
 3.0
 4.3


11 LOC4338264 putative pentatricopeptide repeat-containing protein At1g10330 4338264 Os05g0271900 4.5 2.7
 6.4
 2.4
 3.7
 1.8
 0.5


12 LOC4328111 methyltransferase-like protein 23 4328111 Os02g0120300 4.4 1.1
 7.7
 0.3
 0.9
 3.0
 0.2
1.0
 0.7
13 LOC4328419 pentatricopeptide repeat-containing protein At4g20770 4328419 Os02g0167200 4.4 2.8
 5.9
2.6
 2.3
 2.9
4.0
 0.3
14 LOC9272023 pentatricopeptide repeat-containing protein At4g02820, mitochondrial 9272023 Os12g0527900 4.3 2.8
 5.8
 1.0
 2.7
 1.1
 2.4
 0.5
 0.1
 1.5
15 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 4.3 4.0
 4.5
 2.2
 1.5
0.7
 1.5
1.4
 1.3
 1.0
 1.6
 1.3
16 LOC4340258 ribonucleoside-diphosphate reductase large subunit 4340258 Os06g0168600 4.2 3.6
 4.9
 1.7
 1.5
0.8
 1.5
0.1
 0.9
0.4
 1.8
1.6
 1.8
1.7
 -0.3
-0.5
17 LOC4334286 pentatricopeptide repeat-containing protein At2g22070 4334286 Os03g0775400 4.2 2.1
 6.4
 4.3
 3.5
 2.5
 2.2


18 LOC4351907 pentatricopeptide repeat-containing protein At5g27110 4351907 Os12g0256900 4.2 3.0
 5.5
4.3
 1.4
 3.5


19 LOC4346006 putative pentatricopeptide repeat-containing protein At3g05240 4346006 Os08g0511000 4.2 3.6
 4.8




2.7
 -0.1
20 LOC4336112 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4336112 Os04g0469400 4.2 3.6
 4.7
 5.6
 3.9
 2.0
 3.5
2.3
 0.9
21 LOC4339672 pentatricopeptide repeat-containing protein At5g39680 4339672 Os05g0572900 4.2 3.7
 4.6
 5.2
 4.4
 3.0
 3.7
3.2
 0.1
22 LOC4342430 uncharacterized LOC4342430 4342430 Os07g0155200 4.1 4.0
 4.1
 3.7
 1.5
 2.5
 2.2
 1.4
 1.2
 0.4
23 LOC4345875 uncharacterized LOC4345875 4345875 Os08g0484800 4.0 3.2
 4.9
 0.0
 2.4
1.5
 1.0
0.6
 -0.0
 0.9
0.5
 1.7
 0.3
24 LOC4334088 pentatricopeptide repeat-containing protein At3g22670, mitochondrial 4334088 Os03g0746400 4.0 2.8
 5.2
4.8
3.6
 2.2
2.2
 2.8
2.6
 -1.2
25 LOC4339867 uncharacterized LOC4339867 4339867 4.0 3.1
 4.9






26 LOC4327084 pentatricopeptide repeat-containing protein DOT4, chloroplastic 4327084 Os01g0205200 4.0 3.9
 4.1
 4.2
 5.7
0.6
 3.7
1.9

3.0
 1.4
27 LOC4342822 pentatricopeptide repeat-containing protein At4g18520, chloroplastic 4342822 Os07g0244400 4.0 2.4
 5.5
 3.9
 4.9
 2.4
 4.6
4.0
 -0.7
28 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 3.9 4.3
 3.5
 2.9
 3.2
 2.7
 2.4
 3.3
 3.2
 2.1
29 LOC4341594 nuclear intron maturase 4, mitochondrial 4341594 Os06g0634100 3.9 3.0
 4.8
0.0
 0.1
 2.6
 2.7
 1.6
 1.4
30 LOC4345516 pentatricopeptide repeat-containing protein At5g12100, mitochondrial 4345516 Os08g0402600 3.9 1.3
 6.4






31 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 3.8 3.8
 3.9
 1.0
 1.7
1.3
 0.4
0.3
 1.8
 2.8
 2.3
0.3
 0.5
-0.7
32 LOC4326401 probable dual-specificity RNA methyltransferase RlmN 4326401 Os01g0973400 3.8 3.0
 4.5
 4.2
 3.7
3.5
 3.6
2.4
 0.2
 4.0
 3.0
 1.5
33 LOC4346941 DEAD-box ATP-dependent RNA helicase 22-like 4346941 OSNPB_090383400 3.8 3.4
 4.1
 3.6
 5.7
 3.5
 2.5
 3.5
 4.1
 -0.2
34 LOC4338098 pentatricopeptide repeat-containing protein At3g49170, chloroplastic 4338098 Os05g0212100 3.8 2.6
 4.9
 5.0
 5.7
 2.6
 4.5
5.2
 0.9
35 LOC4330986 putative pentatricopeptide repeat-containing protein At4g17915 4330986 Os02g0793200 3.8 2.7
 4.8
 3.6
 0.0
 1.0
 1.2
1.1
 1.1
 1.5
 2.1
36 LOC4345325 pentatricopeptide repeat-containing protein At4g39530 4345325 Os08g0340900 3.8 2.2
 5.3
 6.0
 5.1
 2.1
 5.1


37 LOC4350793 pentatricopeptide repeat-containing protein At4g14850 4350793 Os11g0583300 3.6 3.4
 3.9
 4.2
 4.2
 2.4
 4.1
4.1
3.2
 1.8
0.6
38 LOC4351584 pentatricopeptide repeat-containing protein At4g15720 4351584 Os12g0163600 3.6 1.9
 5.3




2.9
 0.7
39 LOC4332202 uncharacterized LOC4332202 4332202 Os03g0240400 3.6 1.6
 5.5
 1.6
 2.1
 0.2
2.1
 1.5
 -0.7
40 LOC4330030 pentatricopeptide repeat-containing protein At3g29230 4330030 Os02g0625100 3.5 4.9







41 LOC4334193 pentatricopeptide repeat-containing protein At1g77360, mitochondrial 4334193 Os03g0761300 3.5 2.5
 4.5
 3.2
 1.1
 0.5
 2.3
 1.2
 2.3
 0.0
42 LOC4334328 pentatricopeptide repeat-containing protein At5g14080 4334328 Os03g0782900 3.5 3.0
 4.0
 1.0
 2.2
 1.4
 3.7
 2.7
 1.0
 0.7
43 LOC4340542 uncharacterized LOC4340542 4340542 Os06g0225100 3.5 3.1
 3.9






44 LOC4324326 pentatricopeptide repeat-containing protein At1g05600 4324326 Os01g0913800 3.5 2.1
 4.8
 3.1
 1.2
 -0.4
 1.5
 2.0
 -0.1
-0.3
 -0.1
-0.5
45 LOC9269712 ABC transporter A family member 7 9269712 Os09g0360900 3.5 2.1
 4.9
 1.0
0.2
 0.7
-0.7
 1.8
-0.4
 1.4
-0.5
 0.5
-0.0
 -0.2
-0.4
 1.3
0.5
46 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 3.5 3.6
 3.3
 3.1
2.7
 4.0
2.8
 2.5
1.7
 2.6
0.9
 2.7
2.4
 2.6
2.3
 0.8
0.2
47 LOC4351677 pentatricopeptide repeat-containing protein At2g33760 4351677 Os12g0181900 3.5 2.4
 4.5
3.0
 2.2
4.2

48 LOC4327956 pentatricopeptide repeat-containing protein At1g33350 4327956 Os01g0800400 3.4 2.2
 4.7




3.6
 -0.0
49 LOC4330083 DEAD-box ATP-dependent RNA helicase 47A-like 4330083 OSNPB_020636300 3.4 3.6
 3.2
 5.6
 5.4
3.8
 1.3
1.2
 2.2
 3.8
 0.5
 1.0
50 LOC4344710 nucleolar GTP-binding protein 1 4344710 Os08g0158900 3.4 3.7
 3.2
 1.6
 2.0
 1.9
 0.8
 0.8
 1.2
 1.1
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