Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4339961   pentatricopeptide repeat-containing protein At5g16420, mitochondrial 
 osa-r.5   4339961   pentatricopeptide repeat-containing protein At5g16420, mitochondrial 
 osa-m.8   4339961   pentatricopeptide repeat-containing protein At5g16420, mitochondrial 
 ath-u.4   AT5G16420   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.4   100793875   pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like 
 gma-u.4   100803526   pentatricopeptide repeat-containing protein At5g16420, mitochondrial 
 sly-u.4   101259673   pentatricopeptide repeat-containing protein 
 ppo-u.4   7489813   pentatricopeptide repeat-containing protein At5g16420, mitochondrial 
 mtr-u.4   11405794   pentatricopeptide repeat-containing protein At5g16420, mitochondrial 

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Top 50 coexpressed genes to 4339961 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3040   Spliceosome  4 177 3.28
 osa3022   Basal transcription factors  1 47 -

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osa:LOC4339961 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4339961
osa-r.5
for
4339961
osa-m.8
for
4339961
ath-u.4
for
AT5G16420
gma-u.4
for
100793875
gma-u.4
for
100803526
sly-u.4
for
101259673
ppo-u.4
for
7489813
mtr-u.4
for
11405794
1 LOC4344410 ENHANCER OF AG-4 protein 2 4344410 Os08g0100500 4.6 3.8
 5.3
 0.8
-0.1
 0.2
0.2
 1.7
0.7
 3.1
 3.0
1.8
 2.4
2.1
2 LOC4339802 chromatin modification-related protein EAF1 B 4339802 Os05g0593550 4.0 3.3
 4.7
 0.1
-0.1
 0.4
0.4
 3.2
1.9
 2.9
2.4
 3.7
2.8
 2.7
1.6
3 LOC4335199 uncharacterized LOC4335199 4335199 Os04g0221600 4.0 3.2
 4.7
 1.9
 0.3
0.2
 0.7
0.5
 1.2
 2.5
1.3
 3.8
4 LOC4325314 pentatricopeptide repeat-containing protein At3g54980, mitochondrial 4325314 Os01g0611900 3.9 4.1
 3.6





5 LOC9268967 uncharacterized LOC9268967 9268967 Os05g0117864 3.8 2.8
 4.9
 0.8
 1.9
 2.9
 3.1
 2.5
2.2
 3.1
6 LOC4334819 transcriptional repressor ILP1 4334819 Os03g0853700 3.8 3.4
 4.2
 0.6
 2.1
1.5
 1.4
1.1
 1.8
 1.7
 3.2
7 LOC9269796 uncharacterized LOC9269796 9269796 Os07g0454400 3.7 4.7
 2.7
 -0.6
 0.8
 1.5
 0.4
 2.7
1.7
 2.5
8 LOC4344716 DEAD-box ATP-dependent RNA helicase 42-like 4344716 OSNPB_080159900 3.7 4.0
 3.5
 0.1
 1.8
1.4
 3.3
3.0
 2.1
 1.5
1.5
 4.5
9 LOC4345278 uncharacterized LOC4345278 4345278 Os08g0326300 3.7 3.9
 3.5




1.9
10 LOC4329933 protein FAR1-RELATED SEQUENCE 6 4329933 Os02g0608100 3.6 5.1
 2.1





11 LOC4328038 uncharacterized LOC4328038 4328038 Os02g0109900 3.6 4.4
 2.8
 1.1
 0.9
0.8
 1.8
0.7
 -0.2
 1.1
 2.2
12 LOC4343665 protein TIME FOR COFFEE 4343665 Os07g0571100 3.6 3.4
 3.8
 0.3
 1.6
1.3
 2.6
2.5
 1.1
 3.2
2.2
 2.9
13 LOC4332202 uncharacterized LOC4332202 4332202 Os03g0240400 3.6 3.8
 3.3
 0.3
 2.7
 4.3
2.6
 2.9
14 LOC4338016 sister-chromatid cohesion protein 3 4338016 Os05g0188500 3.5 3.0
 4.1
 0.4
 -0.1
 0.2
 -0.5
 2.2
1.4
 3.2
15 LOC4336550 uncharacterized LOC4336550 4336550 Os04g0543200 3.5 5.1
 1.9
 0.9
 1.9
1.7
 3.9
2.7
 1.6
1.6
 1.5
0.7
 5.5
3.4
16 LOC4341926 pentatricopeptide repeat-containing protein At5g44230 4341926 Os06g0694300 3.5 5.1
5.1
 1.5
 2.1
 0.7
 1.7
 2.0
17 LOC9266524 SWI/SNF complex subunit SWI3C 9266524 Os12g0176700 3.5 3.1
 3.8
 -0.1
 2.0
1.7
 3.3
2.2
 1.2
 4.3
4.0
 3.7
18 LOC4345219 pentatricopeptide repeat-containing protein At5g65560 4345219 Os08g0300700 3.5 3.6
 3.3





19 LOC107275888 SPX domain-containing membrane protein Os09g0521800 107275888 OSNPB_090521800 3.4 4.6






20 LOC4333696 uncharacterized LOC4333696 4333696 Os03g0672700 3.4 3.0
 3.9
 1.4
 2.1
1.3
 2.6
1.9
 1.7
 2.1
 2.7
1.9
21 LOC4341090 pentatricopeptide repeat-containing protein At4g13650 4341090 Os06g0493801 3.4 4.7






22 LOC4348939 pre-mRNA-processing protein 40C 4348939 Os10g0485000 3.4 1.7
 5.1
 0.6
 1.3
0.6
 2.3
1.1
 2.3
 2.7
0.5
 4.0
23 LOC4325055 transcription initiation factor TFIID subunit 12 4325055 Os01g0858500 3.4 2.1
 4.7
 0.8
 2.1
1.2
 1.8
1.3
 2.6
 2.1
 3.6
24 LOC4344820 helicase-like transcription factor CHR28 4344820 Os08g0180300 3.4 2.5
 4.3
 0.5
0.1
 3.0
1.4
 1.1
1.0
 1.6
0.6
 1.3
-0.1
 2.7
1.4
25 LOC4336311 uncharacterized LOC4336311 4336311 Os04g0501600 3.4 1.2
 5.5
 1.7
0.8
 2.1
1.7
 2.1
1.5
 0.9
0.3
 2.8
1.7
 2.5
1.9
26 LOC4328404 pentatricopeptide repeat-containing protein At4g21065 4328404 Os02g0164600 3.3 2.1
 4.6
1.4
 0.7
 1.4
1.2
27 LOC4344297 E3 ubiquitin-protein ligase SHPRH 4344297 Os07g0680500 3.3 2.8
 3.9
 0.4
 -0.4
 1.2
 0.3
 2.2
 2.3
28 LOC107280668 DDB1- and CUL4-associated factor homolog 1 107280668 Os04g0691200 3.3 4.2
-0.7
 1.1
0.6
 0.7
0.3
 0.2
 1.8
 3.0
29 LOC4329334 pentatricopeptide repeat-containing protein At5g18475 4329334 Os02g0468500 3.3 4.1
1.9
 1.6
 3.5
 -1.0
 0.7
30 LOC4334328 pentatricopeptide repeat-containing protein At5g14080 4334328 Os03g0782900 3.3 3.2
 3.3
 0.4
 2.6
 1.3
 1.1
 0.5
 3.7
31 LOC4328284 splicing factor 3B subunit 1 4328284 Os02g0146400 3.3 2.9
 3.7
 0.6
 2.5
0.7
 1.5
0.4
 1.8
 1.9
1.6
 5.2
32 LOC4326897 uncharacterized LOC4326897 4326897 Os01g0765300 3.3 3.0
 3.5
 0.2
 1.7
1.3
 1.7
1.6
 4.4
 3.4
 4.6
33 LOC9269757 zinc finger CCCH domain-containing protein 19 9269757 Os09g0530600 3.3 3.9
0.9
-1.4
 1.2
0.3
 1.9
1.6
 2.2
1.1
 2.0
1.5
 2.8
2.7
34 LOC4334314 pentatricopeptide repeat-containing protein At4g21300 4334314 Os03g0781200 3.2 2.6
 3.9
 2.0
 2.5
2.5
 2.3
0.6
 -0.5
 1.8
 1.1
35 LOC4338502 uncharacterized LOC4338502 4338502 Os05g0350700 3.2 2.3
 4.1
 1.6
0.8
 0.5
-0.1
 2.8
1.8
 2.9
 2.8
1.5
 3.3
2.5
36 LOC4347892 R3H domain-containing protein 1 4347892 Os09g0568000 3.2 2.7
 3.8
0.2
-1.1
 0.8
0.3
 0.0
 1.7
1.7
 1.9
1.3
37 LOC4337507 increased DNA methylation 1 4337507 Os04g0691700 3.2 3.2
 3.2
 0.4
 2.8
2.4
 3.2
2.3
 1.8
 0.4
 5.0
38 LOC4352932 structural maintenance of chromosomes protein 1 4352932 Os12g0641500 3.2 2.2
 4.2
 0.4
 1.7
0.4
 1.8
1.6
 2.4
 2.7
 2.7
1.8
39 LOC4329095 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 4329095 Os02g0301500 3.2 2.5
 3.8
 -0.3
 2.3
2.3
 2.2
1.9
 1.3
0.2
 1.4
0.2
 4.0
3.8
40 LOC107281606 uncharacterized LOC107281606 107281606 3.2 4.6






41 LOC4334088 pentatricopeptide repeat-containing protein At3g22670, mitochondrial 4334088 Os03g0746400 3.2 1.8
 4.5
1.6
1.0
 -0.3
-0.8
 -0.3
2.9
42 LOC4343221 uncharacterized LOC4343221 4343221 Os07g0477500 3.2 4.4
 1.9
 0.4
 2.6
1.7
 3.9
3.7
 1.4
 2.8
2.1
 4.8
2.8
43 LOC4339610 homeobox-DDT domain protein RLT2 4339610 Os05g0562400 3.1 2.5
 3.8
 0.3
-0.4
 2.5
1.2
 4.9
4.4
 1.8
1.0
 3.2
3.2
 4.6
4.6
44 LOC4352386 uncharacterized LOC4352386 4352386 Os12g0527800 3.1 1.7
 4.6
 1.9
1.1
 0.2
-0.1
 1.7
1.4
 2.3
1.6
 2.1
1.3
 3.0
45 LOC4324178 uncharacterized LOC4324178 4324178 Os01g0655400 3.1 2.7
 3.6
 -0.0
 1.5
0.9
 2.0
1.6
 2.6
 2.9
2.8
 4.2
46 LOC4343576 actin cytoskeleton-regulatory complex protein PAN1 4343576 Os07g0557500 3.1 2.8
 3.5





47 LOC4336074 putative pentatricopeptide repeat-containing protein At1g09680 4336074 Os04g0463300 3.1 4.0
 2.3
 7.4
 2.3
 -0.1
 1.9
2.3
48 LOC4324025 protein ENHANCED DOWNY MILDEW 2 4324025 Os01g0510500 3.1 2.5
 3.7
 -0.4
-0.5
 2.4
0.5
 1.8
0.3
 2.5
0.4
 3.9
 3.3
1.3
49 LOC4328058 ATP-dependent helicase BRM 4328058 Os02g0114033 3.1 3.0
 3.2
 -0.3
 2.2
1.7
 4.1
3.7
 0.8
 2.5
1.4
 3.0
3.0
50 LOC4326353 zinc finger CCCH domain-containing protein 7-like 4326353 OSNPB_010572100

0.3

2.0
 1.9
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