Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4340852   uncharacterized LOC4340852 
 osa-r.5   4340852   uncharacterized LOC4340852 
 osa-m.8   4340852   uncharacterized LOC4340852 
 osa-u.4   4330546   PHD finger protein At3g20280 
 ath-u.4   AT1G50620   RING/FYVE/PHD zinc finger superfamily protein 
 ath-u.4   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 gma-u.4   100783208   uncharacterized LOC100783208 
 gma-u.4   100807139   uncharacterized LOC100807139 
 sly-u.4   101263491   uncharacterized LOC101263491 
 sly-u.4   101263625   uncharacterized LOC101263625 
 ppo-u.4   7487518   uncharacterized LOC7487518 
 mtr-u.4   11423387   uncharacterized LOC11423387 

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Top 50 coexpressed genes to 4340852 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa440   Phosphonate and phosphinate metabolism  1 9 -
 osa3008   Ribosome biogenesis in eukaryotes  1 90 -
 osa564   Glycerophospholipid metabolism  1 120 -
 osa3040   Spliceosome  2 196 -

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osa:LOC4340852 (uncharacterized LOC4340852) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4340852
osa-r.5
for
4340852
osa-m.8
for
4340852
osa-u.4
for
4330546
ath-u.4
for
AT1G50620
ath-u.4
for
AT3G20280
gma-u.4
for
100783208
gma-u.4
for
100807139
sly-u.4
for
101263491
sly-u.4
for
101263625
ppo-u.4
for
7487518
mtr-u.4
for
11423387
1 LOC4347030 uncharacterized LOC4347030 4347030 Os09g0410400 4.2 4.2
 4.2
 1.1







2 LOC4344171 F-box protein SKIP5 4344171 Os07g0659700 4.0 3.5
 4.5
 0.9
 0.8
 -0.5
 1.3
 -0.2
 1.0
 1.5
 1.0
0.4
 1.8
3 LOC4325305 DNA polymerase eta 4325305 Os01g0757800 3.8 1.9
 5.8
 -0.5
 3.0
 0.6
 1.6
 1.2
 4.0
 2.3
 0.5
 0.6
4 LOC4333825 importin-5 4333825 Os03g0701000 3.8 3.8
 3.8
 4.0
1.3
 0.6
 1.8
 2.5
2.3
 4.1
4.0
 2.4
 3.8
 3.7
3.5
 5.5
4.1
5 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 3.8 2.4
 5.2
 -0.3
 0.7
 1.5
 0.1
 0.0
 0.4
 -0.6
0.2
6 LOC4324952 5'-3' exoribonuclease 3 4324952 Os01g0872700 3.7 3.6
 3.8
 2.5
 4.3
3.5
 4.3
1.7
 1.1
1.0
 2.7
2.3
 3.0
0.5
 3.3
1.8
 3.9
0.6
 3.2
-0.2
7 LOC4350772 uncharacterized LOC4350772 4350772 Os11g0578100 3.7 2.5
 5.0
 5.1
2.4
 3.5
2.0
 3.3
2.9
 3.1
3.0
 5.0
3.0
 3.1
1.7
 5.2
2.7
 4.5
2.4
 4.9
4.3
8 LOC4329687 calmodulin-binding protein 60 D 4329687 Os02g0562300 3.6 2.3
 4.9
 3.9
2.7
 1.6
1.2
 2.1
1.2
 1.5
-0.0
 4.4
1.4
 1.4
-0.6
 1.8
0.7
 2.7
2.6
 3.0
0.4
9 LOC4337362 zinc finger CCCH domain-containing protein 32-like 4337362 OSNPB_040671800 3.6 3.4
 3.8
 5.1
 2.7
 1.1
 1.3
1.2
 3.1
2.9
 2.1
1.4
 5.3
5.2
 2.0
1.4
 3.8
10 LOC4324674 uncharacterized protein At1g51745 4324674 Os01g0558500 3.5 3.4
 3.6
 4.1
 4.0
1.6
 2.0
0.8
 3.4
1.0
 4.4
2.0
 3.7
0.3
 3.7
-0.5
 3.3
1.7
 2.0
11 LOC4349831 two-component response regulator-like APRR3 4349831 Os11g0157600 3.5 1.9
 5.1
 1.4







12 LOC4342717 pentatricopeptide repeat-containing protein At2g41720 4342717 Os07g0213300 3.5 2.7
 4.2
 0.5
 1.3
 1.3
 1.7
 2.2
 0.3
 0.9
 1.3
 1.1
13 LOC4328457 ribosomal RNA large subunit methyltransferase I 4328457 Os02g0173700 3.4 2.2
 4.7
 0.1
 0.6
 0.8
 0.5
 1.4

0.1
 1.2
14 LOC9268114 splicing factor-like protein 1 9268114 3.4 3.4
 3.5
 4.0
 3.3
 2.3
 1.7
1.3
 3.6
1.7
 2.5
 2.3
 2.4
2.3
 3.4
15 LOC4330546 PHD finger protein At3g20280 4330546 Os02g0720000 3.4 2.9
 3.9
 3.4
 6.1
 6.1
 8.8
 8.8
 4.7
 4.7

16 LOC4328660 probable serine acetyltransferase 1 4328660 Os02g0202800 3.4 2.3
 4.5
 2.3
1.7







17 LOC4344833 polyadenylation and cleavage factor homolog 4 4344833 Os08g0187700 3.3 3.4
 3.3
 5.1
 4.2
 3.6
 4.2
3.9
 3.7
2.1
 7.1
 1.5
 3.9
3.5
 2.1
18 LOC4329586 ribonuclease J 4329586 Os02g0539600 3.3 2.0
 4.7
 1.1
 2.3
 1.0
 1.3
0.9
 1.7
0.7
 0.2
 -0.4
 3.5
1.8
 0.4
-0.0
19 LOC4333350 uncharacterized LOC4333350 4333350 Os03g0588200 3.3 3.0
 3.6
 2.5







20 LOC4349344 putative pre-16S rRNA nuclease 4349344 Os10g0555200 3.3 2.1
 4.5
 1.0
 0.4
 0.2
 0.5
 0.1
 1.1
 -0.2
 1.0
 1.4
-0.2
21 LOC4336244 uncharacterized LOC4336244 4336244 Os04g0490700 3.2 3.7
 2.7
 2.8
 3.3
 2.3
 0.9
0.2
 0.5
0.4
 0.7
 0.9
 1.5
0.4
 0.2
-0.2
22 LOC4337784 probable ATP-dependent DNA helicase CHR12 4337784 Os05g0144300 3.1 1.6
 4.6
 7.4
 5.9
3.6
 5.1
4.8
 2.1
2.1
 4.8
3.7
 3.0
 4.0
 4.2
3.5
 3.6
2.4
23 LOC4329448 uncharacterized LOC4329448 4329448 Os02g0510000 3.1 2.9
 3.3
 3.8
3.7
 4.8
2.8
 3.5
1.6
 2.1
2.1
 4.5
3.7
 1.3
1.2
 4.9
3.2
 2.0
1.7
 3.5
2.4
24 LOC4330513 AT-rich interactive domain-containing protein 5 4330513 Os02g0714300 3.1 3.3
 2.9
 4.6
1.4
 2.2
0.7
 1.7
0.4
 4.2
2.1
 3.3
2.8
 1.6
 3.0
 3.1
2.1
 4.5
-0.5
25 LOC4333489 pentatricopeptide repeat-containing protein At5g66500, mitochondrial 4333489 Os03g0624800 3.1 3.0
 3.2
 3.9
 -0.4
 1.0
 1.1
0.5
 1.5
0.4


1.4
26 LOC4333915 splicing factor SF3a60 homolog 4333915 Os03g0717600 3.1 1.6
 4.5
 4.7
 2.5
 2.9
 1.3
0.0
 2.1
0.9
 4.5
 2.4
 0.9
0.7
 0.6
27 LOC107275947 calmodulin-binding protein 60 D 107275947 Os11g0379251 3.0 4.8
2.7
2.1
 -1.1
 -0.6
 0.6
0.1
 1.8
1.3
 1.3
 -0.6
 1.7
0.7
 1.2
28 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 3.0 2.9
 3.2
 0.8
 -0.5
 0.8
 0.5
 1.4
 -0.1
 0.6
 0.6
 0.7
29 LOC4334605 receptor-like cytoplasmic kinase 176 4334605 Os03g0821900 3.0 3.3
 2.7
 3.4
1.7
 -0.1
-0.1
 1.0
0.9
 2.4
1.7
 2.0
1.1
 -0.2
-0.2
 1.3
1.2
 1.4
0.5
 2.1
1.7
30 LOC4337399 transcription factor SRM1 4337399 Os04g0676700 3.0 1.5
 4.4
 1.3
-0.1
 1.9
0.6
 1.7
-0.2
 1.4
0.4
 1.7
-0.1
 0.8
-1.1
 0.5
0.2
 1.4
0.6
 0.9
-0.3
31 LOC4328265 auxin response factor 5 4328265 OSNPB_020141100 3.0 3.3
 2.6
 1.0
1.0

0.6
0.0
 1.3
1.0
 1.4
0.8
 1.0
-0.4
 1.5
1.3
 1.8
32 RA1 rice albino1 4339847 Os06g0103600 3.0 2.7
 3.2
 0.7
 0.7
 1.7
 0.4
 0.6
 1.6
 1.5
 2.7
2.5
 1.8
33 LOC4328600 non-structural maintenance of chromosomes element 4 homolog A 4328600 Os02g0194300 2.9 2.2
 3.7
 3.0
 1.6
-1.1
 1.3
-0.4
 1.8
1.0
 1.4
1.2
 3.0
 3.8
 0.9
0.4
 -0.4
34 LOC4326744 U11/U12 small nuclear ribonucleoprotein 59 kDa protein 4326744 Os01g0226500 2.9 2.8
 3.0
 2.7
 1.5
 1.4
 -0.3
 0.7
 0.8
 1.8
 1.4
 -0.6
35 LOC4344569 transcription factor GTE9 4344569 Os08g0127300 2.9 2.5
 3.4
 3.8
3.1
 2.0
1.9
 1.4
0.5
 1.5
1.4
 3.6
3.4
 4.5
3.1
 4.4
1.6
 4.0
2.3
 3.1
3.0
36 LOC4348512 ethanolamine-phosphate cytidylyltransferase 4348512 Os10g0387000 2.9 3.2
 2.7
 1.7
0.9

-1.4
-1.7
 -0.7
-0.9
 2.9
0.1
 2.8
0.5
 -0.6
-1.3
 -0.4
37 LOC4336176 SWI/SNF complex subunit SWI3A 4336176 Os04g0480400 2.9 2.2
 3.6
 3.5
 3.0
 4.1
 2.2
1.9
 2.8
2.7
 3.9
 2.2
 1.4
 1.4
38 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 2.9 3.1
 2.7
 0.5
 1.3
 1.1
 0.9
0.5
 1.3
0.6
 2.2
 0.7
 1.9
1.8
 1.6
39 LOC4332781 protein pleiotropic regulatory locus 1 4332781 Os03g0339100 2.9 1.7
 4.1
 2.2
 4.3
0.7
 2.1
-0.1
 0.3
-0.3
 1.2
0.0
 4.0
 2.5
 -0.1
 2.0
40 LOC4336257 eIF-2-alpha kinase GCN2 4336257 Os04g0492600 2.9 3.3
 2.5
 1.4
 -0.1
 1.9
 0.8
 1.7
 2.2
 1.0
 0.7
 2.3
41 LOC4331339 DEAD-box ATP-dependent RNA helicase 50-like 4331339 OSNPB_030108600 2.9 2.8
 2.9
 1.0
 0.6
 1.2
 1.0
0.7
 0.3
-0.2
 -0.7
 0.5
 2.6
 0.8
42 LOC4325212 E3 ubiquitin-protein ligase PRT6 4325212 Os01g0148050 2.9 2.7
 3.0
 4.8
 1.1
 1.3
 1.4
1.0
 3.1
2.7
 2.5
1.9
 1.0
0.5
 2.8
 3.7
43 LOC4333214 transcription initiation factor TFIID subunit 4b 4333214 Os03g0441000 2.9 2.3
 3.4
 3.0
 2.4
-0.2
 3.3
0.2
 1.7
0.6
 3.6
2.6
 3.3
 4.3
 2.2
1.0
 2.2
44 LOC4338129 histone H3.v1 4338129 Os05g0220900 2.9 2.5
 3.2
 1.5
 1.4
 1.1
 -0.0
-0.1
 2.3
1.9
 4.4
 2.1
 0.3
 0.4
45 LOC4342775 amino acid transporter ANT1 4342775 Os07g0231400 2.8 2.9
 2.8
 1.4
-0.8
 -1.8
 -1.0
 1.5
-0.5
 -0.4
-1.2

-0.2
 0.3
46 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 2.8 2.3
 3.4
 -0.0
 0.7
 -0.2
 -1.1
-2.5
 -1.1
-2.2
 -1.2
 0.0
 -0.1
 0.1
47 LOC4347749 serine/threonine-protein kinase STY46 4347749 Os09g0544300 2.8 2.2
 3.4
 1.5
-0.1
 1.5
0.5
 1.5
0.8
 0.8
0.8
 1.1
1.0
 0.8
0.4
 1.0
0.3
 1.6
0.9
 2.2
1.7
48 LOC4326720 shaggy-related protein kinase alpha 4326720 Os01g0296100 2.8 1.8
 3.8
 3.6
2.1
 1.3
1.0
 1.3
0.7
 1.8
1.3
 2.9
2.3
 3.2
2.4
 3.5
3.0
 1.6
1.4
 2.6
1.9
49 LOC4345875 uncharacterized LOC4345875 4345875 Os08g0484800 2.8 1.2
 4.4








50 LOC4348553 F-box/LRR-repeat protein 15 4348553 Os10g0396666 2.8 3.0
 2.6








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