Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4341695   DNA-directed RNA polymerase 3B, chloroplastic 
 osa-r.5   4341695   DNA-directed RNA polymerase 3B, chloroplastic 
 osa-m.8   4341695   DNA-directed RNA polymerase 3B, chloroplastic 
 osa-u.4   4346491   DNA-directed RNA polymerase 1B, mitochondrial 
 ath-u.4   AT5G15700   DNA/RNA polymerases superfamily protein 
 ath-u.4   MGP3   male gametophyte defective 3 
 ath-u.4   SCA3   DNA/RNA polymerases superfamily protein 
 gma-u.4   100814762   DNA-directed RNA polymerase 1B, mitochondrial 
 gma-u.4   100781410   DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial 
 gma-u.4   100779299   DNA-directed RNA polymerase 3B, chloroplastic 
 sly-u.4   101255094   DNA-directed RNA polymerase 1, mitochondrial 
 sly-u.4   101248533   DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial 
 sly-u.4   101248495   DNA-directed RNA polymerase 3, chloroplastic 
 ppo-u.4   18107462   DNA-directed RNA polymerase 2, chloroplastic/mitochondrial 
 ppo-u.4   18097654   DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial 
 ppo-u.4   7489426   DNA-directed RNA polymerase 3, chloroplastic 
 mtr-u.4   11419494   DNA-directed RNA polymerase 1B, mitochondrial 
 mtr-u.4   11433844   DNA-directed RNA polymerase 2, chloroplastic/mitochondrial 

close


Top 50 coexpressed genes to 4341695 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3440   Homologous recombination  2 54 2.24
 osa250   Alanine, aspartate and glutamate metabolism  1 53 -
 osa1232   Nucleotide metabolism  1 80 -
 osa230   Purine metabolism  1 91 -
 osa1240   Biosynthesis of cofactors  1 248 -

close


osa:LOC4341695 (DNA-directed RNA polymerase 3B, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4341695
osa-r.5
for
4341695
osa-m.8
for
4341695
osa-u.4
for
4346491
ath-u.4
for
AT5G15700
ath-u.4
for
MGP3
ath-u.4
for
SCA3
gma-u.4
for
100814762
gma-u.4
for
100781410
gma-u.4
for
100779299
sly-u.4
for
101255094
sly-u.4
for
101248533
sly-u.4
for
101248495
ppo-u.4
for
18107462
ppo-u.4
for
18097654
ppo-u.4
for
7489426
mtr-u.4
for
11419494
mtr-u.4
for
11433844
1 LOC4337150 DNA polymerase I A, chloroplastic-like 4337150 Os04g0637400 8.0 7.7
 8.3
 6.4
4.1
 6.7
3.8
 6.3
5.5
 7.9
6.7
 4.5
4.2
 5.1
3.3
 3.9
3.2
 3.3
 2.9
 4.8
 2.0
1.2
 3.0
2.4
 3.0
2.8
 4.3
4.2
 4.0
3.9
2 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 7.8 6.2
 9.5
 2.8
 4.2
 4.9
 9.8
 3.9
3.0
 4.1
3.8
 3.9
3.1
 1.1
 0.9
 3.3
 0.9
0.9
 3.0
1.7
 4.0
2.6
 2.2
 3.8
3 LOC4327567 Ribonuclease III domain-containing protein RNC1, chloroplastic 4327567 OSNPB_010810100 7.0 5.4
 8.5
 0.8
 -0.2
 -0.4
 3.4
 2.3
1.2
 2.4
1.2
 3.0
1.4
 2.3
 1.8
 3.5
 1.3
 2.8
 2.7
 0.5
 2.0
4 LOC4348255 uncharacterized LOC4348255 4348255 Os10g0198600 6.6 5.0
 8.2
 4.3
 1.2
 2.1
 4.2
 1.7
1.6
 2.1
1.5
 2.8
1.4
 0.6
 -0.0
 1.7
 1.3
-0.8
 1.7
0.8
 3.0
1.6
 0.7
 2.1
5 LOC4332435 uncharacterized LOC4332435 4332435 Os03g0279600 6.4 6.0
 6.8
 2.3
 4.7
 4.0
 3.5
 3.7
0.9
 5.9
2.5
 3.1
2.7
 6.6
1.3
 4.4
1.0
 4.1
2.2
 0.1
 1.3
 1.7
 3.5
 4.0
6 LOC4344860 pentatricopeptide repeat-containing protein At3g59040 4344860 Os08g0191900 6.3 5.7
 6.9
 2.3
 -0.5
 0.4
 5.8
 1.2
0.3
 1.5
1.1
 2.9
2.4
 0.2
 0.6
 3.3
 1.5
 1.4
 1.9
 0.4
 1.0
7 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 6.0 5.4
 6.7
 2.1
 3.5
 4.6
 7.2
 4.5
 4.4
 3.1
 2.2
 1.1
 3.2
 1.1
 4.0
 3.7
 4.3
 4.2
8 LOC9271035 DNA topoisomerase 1 9271035 Os06g0281400 5.9 5.4
 6.4
 4.2
1.4
 5.8
 6.0
 8.4
 6.2
4.4
 5.2
3.7
 6.2
3.9
 4.2
 3.3
 4.4
 0.4
 4.7
 3.9
 6.9
 6.6
9 LOC9269607 uncharacterized LOC9269607 9269607 Os02g0266500 5.8 4.5
 7.0
 4.0
 0.9
 1.1
 1.3
 2.4
 2.3
 3.8
 0.6
 0.3
 1.2
 1.5
 3.6
 2.6
 0.9
 2.1
10 LOC4339664 protein WHAT'S THIS FACTOR 1 homolog 4339664 Os05g0571100 5.7 3.6
 7.9
 1.2
 3.2
 2.3
 8.4
 2.0
-0.7
 2.4
-0.7
 3.5
1.7
 3.7
 4.6
 4.7
 1.3
1.1
 3.9
1.9
 7.5
3.6
 1.6
 3.5
11 LOC4334623 pentatricopeptide repeat-containing protein At1g74850, chloroplastic 4334623 Os03g0824100 5.7 6.0
 5.4
 3.0
 0.3
 1.3
 5.5
 2.8
1.3
 3.8
2.9
 2.6
2.2
 2.5
 1.2
 5.7
 0.9
 1.9
 3.2
 1.1
 3.5
12 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 5.7 5.9
 5.5
 0.9
-1.0
 4.2
 3.9
 0.2
 1.2
0.4
 1.1
0.7
 1.7
0.9
 0.7
0.5
 0.1
-0.2
 2.6
0.3
 0.9
0.8
 1.6
0.8
 1.4
1.3
 4.6
1.3
 2.7
1.6
13 LOC4345334 phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like 4345334 OSNPB_080344600 5.6 5.9
 5.4
 3.3
1.3
 -0.3
-0.5
 0.4
0.4
 -0.4
-0.4
 0.8
0.7
 0.9
0.6
 1.9
1.0
 1.0
-1.2
 0.2
-0.9
 -0.3
-0.6
 -0.9
-1.2
 1.1
0.0
 1.3
1.3
 3.1
2.7
 2.9
2.7
14 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 5.6 4.3
 6.9
 1.0
 6.7
-0.6
 5.9
-0.3
 4.8
4.0
 4.5
3.1
 3.3
3.1
 2.8
2.7
 0.4
 0.2
 5.0
 2.5
2.2
 4.3
2.2
 3.6
2.8
 6.6
1.2
 6.1
1.5
15 LOC4330491 ATP-dependent DNA helicase homolog RECG, chloroplastic 4330491 Os02g0710800 5.6 5.5
 5.7
 3.6
 2.3
 1.6
 1.9
 2.6
 2.0
 2.2
 0.0
 1.2
 1.2
 0.7
 2.7
 3.9
 1.8
1.4
 1.6
1.0
16 LOC9269203 tRNase Z TRZ2, chloroplastic 9269203 Os09g0482680 5.6 4.2
 6.9
 2.7
0.6
 1.9
0.9
 1.3
0.0
 5.8
-0.8
 3.2
2.7
 3.5
2.9
 3.6
3.5
 2.6
-0.6
 1.5
-0.1
 2.0
1.5
 0.9
0.4
 2.7
1.2
 2.4
1.7
 4.5
1.1
 4.2
0.9
17 LOC4345893 heat shock protein 90-5, chloroplastic 4345893 Os08g0487800 5.5 3.5
 7.5
 2.2
1.8
 2.5
 3.6
 6.9
 2.8
2.4
 3.8
3.8
 4.6
3.6
 3.0
 2.4
 2.5
 1.6
1.6
 3.4
1.8
 3.8
2.4
 3.9
 4.7
18 LOC4339536 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4339536 Os05g0551900 5.5 7.0
3.4
 -0.3
 0.9
 3.3
 3.1
3.0
 3.3
3.2
 3.4
3.0
 0.3
 1.4
 4.0
 2.4
 2.3
 5.1
 5.4
1.1
 3.5
2.4
19 LOC4341808 twinkle homolog protein, chloroplastic/mitochondrial 4341808 Os06g0671700 5.5 5.8
 5.1
 4.3
 3.5
 2.6
 5.7
 2.3
2.2
 2.1
2.0
 4.8
3.8
 4.8
 6.2
 5.7
 2.7
 2.7
 3.8
 4.3
 4.9
20 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 5.4 5.0
 5.7
 2.0
 -0.5
 -1.3
 2.4
 0.2
-0.3
 1.4
0.6
 2.5
2.4
 -0.0
 0.2
 1.9
 1.4
 0.7
 2.9
 2.3
 2.9
21 LOC4338807 thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic 4338807 Os05g0417200 5.3 4.8
 5.7
 1.5
 2.5
 1.7
 5.9
 0.7
 0.8
 1.8
 -1.0
 0.2
 1.5
 1.4
 -0.3
 2.3
 1.9
 1.8
22 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 5.2 5.9
 4.4
 3.3
0.6
 5.1
0.5
 4.2
0.5
 6.7
4.7
 2.6
1.1
 2.9
1.2
 3.1
2.4
 7.7
1.0
 4.1
0.4
 6.1
2.0
 1.0
1.0
 1.9
1.4
 1.6
1.3
 4.1
1.8
 4.6
2.2
23 LOC4329061 uncharacterized protein At4g37920 4329061 Os02g0291500 5.1 6.5
 3.7
 2.7
 -0.0
 -0.1
 1.1
 1.2
 1.0
 4.5
 0.8
 1.7
 1.6
 1.9
0.4
 2.9
2.4
 5.4
3.0
 0.4
 1.1
24 LOC4336738 uncharacterized LOC4336738 4336738 Os04g0576500 5.1 5.0
 5.2














25 LOC4334849 protein EXPORTIN 1A 4334849 Os03g0858100 5.1 3.6
 6.5
 3.8
 1.1
1.1
 2.5
1.2
 2.9
1.7
 2.2
1.2
 2.6
1.4
 3.0
1.8
 3.7
 3.6
 1.4
 0.2
-0.3
 3.2
1.8
 2.0
1.7
 4.2
3.4
 4.1
2.0
26 LOC4338694 protein PALE CRESS, chloroplastic 4338694 Os05g0393400 5.0 5.1
 5.0
 1.9
 0.2
 0.1
 3.1
 0.3
 0.8
 2.0
 3.1
 2.7
 4.3
 2.3
 1.2
 0.2
 1.2
 2.1
27 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 5.0 4.8
 5.2
 1.2
-0.7
 0.0
 -0.2
 2.2
 5.4
2.4
 4.3
2.9
 4.5
3.7
 -0.8
 -0.0
 2.0
 0.7
 1.9
 2.3
 -0.3
 0.9
28 LOC4339686 pentatricopeptide repeat-containing protein At1g15510, chloroplastic 4339686 Os05g0574800 5.0 6.7
2.3
 5.4
 5.5
 11.4
 2.2
 3.8
 3.2
 3.5
 2.5
 5.4
 1.0
 3.8
 3.4
 2.5
 4.2
29 LOC4325593 uncharacterized LOC4325593 4325593 Os01g0768700 5.0 3.2
 6.8
 5.3
 6.1
 6.2
 4.1
 3.6
3.0
 4.4
3.1
 4.6
4.5
 4.9
2.1
 4.4
3.9
 2.7
1.7
 2.3
1.8
 3.6
3.3
 3.7
2.5
 9.7
 6.1
30 LOC9270208 protein RRP6-like 2 9270208 Os10g0437200 5.0 5.7
 4.2
 5.5
0.9
 5.9
2.7
 6.4
2.2
 3.9
2.1
 5.6
4.4
 4.2
3.7
 2.4
1.8
 4.5
 1.3
 1.8
 1.7
1.4
 2.8
2.4
 2.3
2.1
 4.2
3.3
 3.8
3.2
31 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.9 3.9
 6.0
 2.7
 1.1
 1.7
 5.9
 5.0
2.6
 4.1
1.9
 3.2
2.0
 0.3
 -1.3
 3.2
 0.4
0.2
 1.8
1.1
 2.9
2.6
 0.6
 2.2
32 LOC4332642 adenylosuccinate lyase 4332642 Os03g0313600 4.9 4.4
 5.5
 2.9
 2.0
1.2
 2.0
1.5
 1.2
0.6
 1.4
1.3
 0.9
0.7
 2.6
2.0
 2.2
 1.9
 2.6
 0.3
 1.7
 2.0
 3.2
 2.5
33 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 4.9 4.5
 5.3
 0.8













34 LOC4346040 uncharacterized LOC4346040 4346040 Os08g0517500 4.9 5.8
 4.1
 1.7
0.1
 1.4
0.5
 2.5
0.5
 1.2
0.8
 0.6
 0.5
 0.1
 1.9
 0.9
 1.1
 1.1
-0.2
 1.7
-1.0
 1.6
0.1
 0.8
 -0.0
35 LOC4351665 dynamin-like protein ARC5 4351665 4.9 5.8
 4.0
 3.5
 -0.0
 0.4
 -0.9
 2.4
 1.0
 1.3
 -0.6
 -1.6
 1.4
 2.3
 1.2
 1.1
 -0.3
 0.6
36 LOC4341010 mitogen-activated protein kinase 11-like 4341010 OSNPB_060367900 4.9 4.3
 5.4
 1.7
 1.0
0.5
 1.9
1.0
 0.1
-0.5
 1.2
1.1
 1.4
0.2
 1.5
0.5
 1.6
0.1
 0.6
-0.8
 1.0
-0.0
 1.1
-0.2
 1.6
1.3
 0.6
0.0
 1.0
0.3
 0.9
0.3
37 LOC4325930 probable mitochondrial-processing peptidase subunit beta, mitochondrial 4325930 Os01g0711100 4.9 4.1
 5.6
 2.2













38 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 4.8 4.2
 5.4
 0.7
 -0.2
 -0.1
 3.1
 -0.2
-1.8
 -0.0
-0.9
 1.1
1.0
 -1.6
 -0.5
 2.1
 0.4
 1.1
 1.3
 -0.2
 1.0
39 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 4.8 3.0
 6.6
 2.6
 1.4
 0.8
 3.2
 2.1
1.8
 2.7
0.1
 2.1
1.9
 4.6
 2.8
 5.0
 1.3
 2.7
 4.8
 3.3
 3.4
40 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 4.8 3.7
 5.9
 2.3
 1.4
 1.2
 4.5
 0.8
 0.5
 2.1
 2.2
 -0.5
 2.0
 2.4
 1.2
 2.2
 1.5
 3.4
41 LOC4350404 pentatricopeptide repeat-containing protein At3g49240, mitochondrial 4350404 Os11g0433600 4.8 4.9
 4.7
 3.7
2.3


3.8
1.9
 4.2
2.6
 3.7
2.9
 3.5
 3.2
 3.0
 0.7
 4.6
 3.4
 5.9
1.9
 6.2
2.3
42 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 4.8 4.3
 5.2
 1.8
-0.6
 -0.2
 -0.8
 -0.0
 -0.9
-1.2
 0.3
0.3
 0.6
-0.1
 -1.7
 -0.4
 0.3
 0.8
-0.4
 1.6
1.5
 1.8
1.6
 -2.0
 -0.9
43 LOC4338320 U3 small nucleolar RNA-associated protein 25 4338320 Os05g0295100 4.8 4.9
 4.7
 4.4
 5.1
 5.2
 4.1
 3.4
2.9
 4.9
4.0
 3.1
1.5
 7.5
 6.7
 4.5
 0.9
 2.5
 2.9
 3.8
2.7
 4.1
1.3
44 LOC4340633 uncharacterized LOC4340633 4340633 Os06g0244100 4.8 4.8
 4.7
 5.0
 5.4
 7.3
 4.3
 4.4
2.8
 4.2
2.8
 1.1
0.0
 5.9
 6.9
 3.4
 0.6
 1.3
 0.9
 6.2
 6.7
45 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 4.8 5.5
 4.1
 1.4
 0.2
 0.9
 0.2
 -0.8
 0.0
 1.6
 -1.3
-2.0
 0.2
-0.5
 1.1
0.2
 0.7
 1.1
 2.8
 -0.8
 -0.2
46 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 4.7 4.4
 5.0
 0.5
 -1.3
 -0.7
 2.9
 1.0
 2.0
 0.1
 -0.7
 0.0
 1.9
 0.6
 1.0
 1.7
 0.7
 1.2
47 LOC4331367 uncharacterized LOC4331367 4331367 Os03g0111800 4.7 3.7
 5.7
 4.9
 0.9
 2.5
 3.3
 4.4
 6.3
 5.3
 4.8
 3.1
 2.5
 2.8
 2.9
 1.5
 6.2
 7.3
48 LOC4336229 pentatricopeptide repeat-containing protein At1g06710, mitochondrial 4336229 Os04g0488500 4.7 4.2
 5.1
 5.2
 7.5
 6.3
 6.1
 4.0
1.8
 4.3
1.2
 5.9
1.7
 2.6
 1.0
 1.6
 1.1
 4.6
 2.9
 6.6
 5.0
49 LOC4336345 DNA mismatch repair protein MSH1, mitochondrial 4336345 Os04g0507016 4.6 4.8
 4.4
 3.4
 2.5
 2.7
 3.2
 3.1
2.7
 3.7
2.5
 3.9
2.1
 -0.4
 2.3
 2.7
 2.9
 4.3
 3.6
 3.5
 2.6
50 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 4.6 4.4
 4.9
 0.9
 -0.9
 -0.2
 0.9
 1.6
1.3
 2.9
1.5
 1.2
1.2
 0.4
-0.6
 -0.5
-1.0
 2.0
0.6
 1.3
1.3
 1.8
1.4
 2.5
2.2
 0.1
 0.8
The preparation time of this page was 5.1 [sec].